BAC Information

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BAC

Clone NameB6Ng01-212P03
Chromosome16 (Build37)
Map Location 10,716,048 - 10,858,373
singlet/doubletdoublet
Overlap gene4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
Downstream geneLitaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212P03.bB6Ng01-212P03.g
ACCGA030612GA030613
length6531,063
definitionB6Ng01-212P03.b B6Ng01-212P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,716,048 - 10,716,698)(10,857,322 - 10,858,373)
sequence
gaattcatcagtggtctcatcctttgaaagatcaaagttctcacagtcta
gtcacttccaaagcccacatctgcacaatgttttggggactattctggct
atacagttcatcggggatatttcaggttaaagccataatagtgaatatca
ttatccaaatctctgttttccttttctttttttttttttttttttttttt
tttttttttttttggaggggaggtatgaaaacaaattgagacagggtttc
tctgtttagccctatctgtcctggaacttggtctgtagaccagggtggcc
ccgaactcggagatcccgccccctctgcctcctgagtgctaggattaaaa
acctgaacccctactgccctgccaggtctctactttttttaaaacaatta
tcctggattcctacccatcctaatgactttatcttaaccagctccatctg
cagaatgaccctgtttgcaaaccagatcccactctgaggcctcccaggct
tgtctgggtcagccaaagtgtgccaagtctcctcactggtaccagtttga
tttctgcgtttcaaccaatcacatcaaaaaggatcatgcttctaaatacc
ccatttgaagccatttcttaaggtttaatgggtgcgcctaacctgggcct
cgg
gaattcaatggtgtttactcacagaacattctctgttgattgacagcagt
caaccttggaaactttcaacctaccccagaaggctcagggaacatctcag
aagaggaagtagaaagaatgtgagagctggcctctggatagagcaggact
gttccacccacgaactcacagcagccgtgcccactgtacagacccacaca
agatcaagaattttaagattcccaacatggagtaagaagggttccaatgg
ccaacccctatcagaggagccagtggcagttgatggcttctggggtcatg
tcacttttctttggtgagtgagcattggtagggtcacccaggcccccgtg
catgaccccatacacatgtgcatatgggcagcaccaaccaaatttagtgg
tttaaaaaaaaaaagacatgaaggtaagaaatgggagagatgctatgggg
aaaactgaacagaggagggagagagtatgaccaagatacatggtataaat
gtatatattaaacatttttccttttaaaaaggagccccatgactcttagt
cagacctgtccctccctccctccttccctcccctgagagaaccagcagct
cagtctgtctcccaggattcccctattctggacatttctcatcaaaggaa
gaaggcaagaggaggcctttgtgagagcttctgtgactcagcttcgtgtc
tttcagggtcatttactcgtcagaccaccactgccttttagtccctgttc
tcagagaagttccacgtgagctggagaaccccatgatgagtcagcacacg
ctggtgttgtattcccagaaacagacactaaaaacatgtccagtgtgggc
ctggtggtgcaggtctgggaggattaccgaccctcccaaacatgtttata
ctcagctgaaaatacatagctagaaggtaaaagaaaaagccaatagaact
cggagcagaggcaggagggaggacagtcctctgtccacttattcaagttt
gaggctagcctggagctaccttgacaccctgtcttcaaacaaacaaacaa
atctcacaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_10716048_10716698
seq2: B6Ng01-212P03.b_44_696

seq1  GAATTCATCAGTGGTCTCATCCTTTGAAAGATCAAAGTTCTCACAGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTGGTCTCATCCTTTGAAAGATCAAAGTTCTCACAGTCTA  50

seq1  GTCACTTCCAAAGCCCACATCTGCACAATGTTTTGGGGACTATTCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCCAAAGCCCACATCTGCACAATGTTTTGGGGACTATTCTGGCT  100

seq1  ATACAGTTCATCGGGGATATTTCAGGTTAAAGCCATAATAGTGAATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCATCGGGGATATTTCAGGTTAAAGCCATAATAGTGAATATCA  150

seq1  TTATCCAAATCTCTGTTTTCCTTTTC--TTTTTTTTTTTTTTTTTTTTTT  198
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TTATCCAAATCTCTGTTTTCCTTTTCTTTTTTTTTTTTTTTTTTTTTTTT  200

seq1  TTTTTTTTTTTTTGGAGGGCAGGTATGAGAGCAGATTGAGACAGGGTTTC  248
      ||||||||||||||||||| |||||||| | || ||||||||||||||||
seq2  TTTTTTTTTTTTTGGAGGGGAGGTATGAAAACAAATTGAGACAGGGTTTC  250

seq1  TCTGTTTAGCCCTATCTGTCCTGGAACTTGGTCTGTAGACCAGGCTGGCC  298
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGTTTAGCCCTATCTGTCCTGGAACTTGGTCTGTAGACCAGGGTGGCC  300

seq1  TCGAACTCGGAGATCCTGCCGCCTCTGCCTCCTGAGTGCTAGGATTAAAA  348
       ||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CCGAACTCGGAGATCCCGCCCCCTCTGCCTCCTGAGTGCTAGGATTAAAA  350

seq1  ACGTGAACCACTACTGCCCTGCCAGGTCTCTACTTTTTATAAGACAATTA  398
      || |||||| |||||||||||||||||||||||||||| ||| |||||||
seq2  ACCTGAACCCCTACTGCCCTGCCAGGTCTCTACTTTTTTTAAAACAATTA  400

seq1  TCCTGGATCCATACCCATCCTAATGACTTTATCTTAACCAGCTCCATCTG  448
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATTCCTACCCATCCTAATGACTTTATCTTAACCAGCTCCATCTG  450

seq1  CAGAGTGACCCTGTTTGCAAACCAGATCCCACTCTGAGGCCTCCTAGGCT  498
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGAATGACCCTGTTTGCAAACCAGATCCCACTCTGAGGCCTCCCAGGCT  500

seq1  TGTCTGGGTCAGCCAAAGTGCACCAAGTCTCCTCACTGGTACCAGTTTGA  548
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TGTCTGGGTCAGCCAAAGTGTGCCAAGTCTCCTCACTGGTACCAGTTTGA  550

seq1  TTTCTGCTTCTCAACAGATCACATCACAATGATTCATGCTTCTAGATACC  598
      ||||||| | |||||  ||||||||| || |  ||||||||||| |||||
seq2  TTTCTGCGTTTCAACCAATCACATCAAAAAGGATCATGCTTCTAAATACC  600

seq1  CCATTTGAAGCCATTCCTTAGGGTTAAGTGGGTGCGCCTAACCTGGGCCT  648
      ||||||||||||||| |||| |||| | ||||||||||||||||||||||
seq2  CCATTTGAAGCCATTTCTTAAGGTTTAATGGGTGCGCCTAACCTGGGCCT  650

seq1  CGG  651
      |||
seq2  CGG  653

seq1: chr16_10857322_10858373
seq2: B6Ng01-212P03.g_69_1126 (reverse)

seq1  TGTGAGTTTTTGTTTGTTTGTTTG-AGACAAGGTGTC-AGGTAGCT-CAG  47
      ||||||  |||||||||||||||| ||||| |||||| |||||||| |||
seq2  TGTGAG-ATTTGTTTGTTTGTTTGAAGACAGGGTGTCAAGGTAGCTCCAG  49

seq1  GCTAGCCTCAAACTTG-ATAAGT-GACAGAGGACTGT-CTTCCTCCTGCC  94
      |||||||||||||||| |||||| ||||||||||||| || |||||||||
seq2  GCTAGCCTCAAACTTGAATAAGTGGACAGAGGACTGTCCTCCCTCCTGCC  99

seq1  TCTGCTCCGAGTTCTATTGGCTTTTTCTTTTACCTTCTAGCTATGTATTT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCGAGTTCTATTGGCTTTTTCTTTTACCTTCTAGCTATGTATTT  149

seq1  TCAGCTGAGTATAAACATGTTTGGGAGGTTCGGTAATCCTCCCAGACCTG  194
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCTGAGTATAAACATGTTTGGGAGGGTCGGTAATCCTCCCAGACCTG  199

seq1  CACCACCAGGCCCACACTGGACATGTTTTTAGTGTCTG-TTCTGGGAATA  243
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACCACCAGGCCCACACTGGACATGTTTTTAGTGTCTGTTTCTGGGAATA  249

seq1  CAACACCAGCGTGTGCTGACTCATCATGGGGTTCTCCAGCTCACGTGGAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCAGCGTGTGCTGACTCATCATGGGGTTCTCCAGCTCACGTGGAA  299

seq1  CTTCTCTGAGAACAGGGACTAAAAGGCAGTGGTGGTCTGACGAGTAAATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGAGAACAGGGACTAAAAGGCAGTGGTGGTCTGACGAGTAAATG  349

seq1  ACCCTGAAAGACACGAAGCTGAGTCACAGAAGCTCTCACAAAGGCCTCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAAGACACGAAGCTGAGTCACAGAAGCTCTCACAAAGGCCTCCT  399

seq1  CTTGCCTTCTTCCTTTGATGAGAAATGTCCAGAATAGGGGAATCCTGGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCTTCCTTTGATGAGAAATGTCCAGAATAGGGGAATCCTGGGA  449

seq1  GACAGACTGAGCTGCTGGTTCTCTCAGGGGAGGGAAGGAGGGAGGGAGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTGAGCTGCTGGTTCTCTCAGGGGAGGGAAGGAGGGAGGGAGGG  499

seq1  ACAGGTCTGACTAAGAGTCATGGGGCTCCTTTTTAAAAGGAAAAATGTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGACTAAGAGTCATGGGGCTCCTTTTTAAAAGGAAAAATGTTT  549

seq1  AATATATACATTTATACCATGTATCTTGGTCATACTCTCTCCCTCCTCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATACATTTATACCATGTATCTTGGTCATACTCTCTCCCTCCTCTG  599

seq1  TTCAGTTTTCCCCATAGCATCTCTCCCATTTCTTACCTTCATGTCTTTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTTCCCCATAGCATCTCTCCCATTTCTTACCTTCATGTCTTTTT  649

seq1  TTTTTTAAACCACTAAATTTGGTTGGTGCTGCCCATATGCACATGTGTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAACCACTAAATTTGGTTGGTGCTGCCCATATGCACATGTGTAT  699

seq1  GGGGTCATGCACGGGGGCCTGGGTGACCCTACCAATGCTCACTCACCAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATGCACGGGGGCCTGGGTGACCCTACCAATGCTCACTCACCAAA  749

seq1  GAAAAGTGACATGACCCCAGAAGCCATCAACTGCCACTGGCTCCTCTGAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGACATGACCCCAGAAGCCATCAACTGCCACTGGCTCCTCTGAT  799

seq1  AGGGGTTGGCCATTGGAACCCTTCTTACTCCATGTTGGGAATCTTAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGCCATTGGAACCCTTCTTACTCCATGTTGGGAATCTTAAAAT  849

seq1  TCTTGATCTTGTGTGGGTCTGTACAGTGGGCACGGCTGCTGTGAGTTCGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTTGTGTGGGTCTGTACAGTGGGCACGGCTGCTGTGAGTTCGT  899

seq1  GGGTGGAACAGTCCTGCTCTATCCAGAGGCCAGCTCTCACATTCTTTCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAACAGTCCTGCTCTATCCAGAGGCCAGCTCTCACATTCTTTCTA  949

seq1  CTTCCTCTTCTGAGATGTTCCCTGAGCCTTCTGGGGTAGGTTGAAAGTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTCTGAGATGTTCCCTGAGCCTTCTGGGGTAGGTTGAAAGTTT  999

seq1  CCAAGGTTGACTGCTGTCAATCAACAGAGAATGTTCTGTGAGTAAACACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTGACTGCTGTCAATCAACAGAGAATGTTCTGTGAGTAAACACC  1049

seq1  ATTGAATTC  1052
      |||||||||
seq2  ATTGAATTC  1058