BAC Information

Click to search

BAC

Clone NameB6Ng01-216H15
Chromosome16 (Build37)
Map Location 27,322,042 - 27,439,902
singlet/doubletdoublet
Overlap geneOstn, Uts2d, Ccdc50
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216H15.bB6Ng01-216H15.g
ACCGA033156GA033157
length9961,125
definitionB6Ng01-216H15.b B6Ng01-216H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,439,271 - 27,439,902)(27,322,042 - 27,323,170)
sequence
gaattcactatgtatcccaggactgccatgaactcacagggacccgtccg
tttctctccctcttggattgctggcattacagttatgtgccactgtgcct
ggctaaagattttcctttaatttttttctttctttttttttttaattact
ttacttatttacattctaaaggttgcccccattccctgctcccctccaag
agttcttcctcctatctagcctcccccttgcctctgagagggtgctcccc
cacatacccaccctcttctaccctccacccccttgcatccctctcccctg
gaacatcaagtctctacaggattaggtgtatcctttcccactgaggtcag
acaaggaggtcctctgctacatatgtgccacagaccagcccatccatgta
tgctctttggttggtggctttgtctctgggacctaggtgtaattaatgtt
tctatgtgtatgagtatttgcctacaagttcatgtgtgaaccacttgcat
acttggagccgtcagaagctagaccagagcaacaggtccccttgaactga
agttaaagatcatagtgagcgaccccacagatgatgagcaactgaagcca
ggtcctctgtgagccatctctccagttccaattcattctttatagtgaaa
gctttcaacacactttcatctaggggcttgaaatgtacaaatcataactt
agttatagtctgcctcttgctaaataccaaagtttcttgttcctatttaa
ctatagattattcccatggatagaactccccctattctcctcccctgttt
tatccatgccatccttctgtgtttaagccttctcttcatatttttgatca
aacattctggggaagacaatataaataataaagaaaaatagaactttctt
ttccagactcaaactgtttgactagtaatgggtgaaaagacagcagtccc
tcaacacgtgactgtaagtcatgaaagaacaactgaacacaagtca

gaattcagagcaagtgacttagatatttttaaaagttaataagatctgta
ttcctcaaaaaaataaaaaagtaaaaattaatttattatcactacaaaca
ttttaatttcatcattgcatcaacatgagatattattgtataaaatataa
agttggttgcatgctgaattttacatagttttggccaaaccttttattac
aataggacacaaaattatggggtttttttattatattagttggaagacta
aaaaccctttccagatgtttcagttcctgttattttgtctgtggtctttt
gttctctcaagaagatgctttttcagggcttggtaggctgtgaccattgg
cttcatacagtagtcaagagtattgcagccagatactgctgactgaataa
tgttctaagattcttgcaggccacaggtataggcacctgttacacccctg
gcacagtcctaggatgttcagaatccccagcccttaacagcagggagtag
tacaagttctggccctaaagtgtctaaggttcgtaaggcctgccaaatgt
ctctggtataattccaaagactgtgattttactttcctagctgtttagaa
gcatgtgaccttcaaactcaggtccctgatcattcacaccttctcttgac
tgcttccatttattttgtttctgccttggaggatctctggacaaactctc
caattatctctttctgctgtggtggtcacagctgcccttgaagagaaagt
aaccagcattgatttgtacctaccttggtgcctgctacccctctgctgcc
agctcctgtctttgtttgtaaaattgtgaagtgtttctgaagctctgcct
tgcctctgcaaccataaggtggcaggaaaagccactgccagagagagttt
tgcagtggacctacattgcatgggcagaagaggatttctatcagtcatta
gtttagcagatgagctcatgagcttaaacagccagcaatacagactgctt
acagaaatcttcatggaaattttgtttacacttaatcatgggcattgctg
gtttatacaaggcattggtcaatcttgctaggccacccctctgagctgtg
gggagtaatttggagagggagatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27439271_27439902
seq2: B6Ng01-216H15.b_41_672 (reverse)

seq1  ATTGGAACTGGAGAGATGGCTCACAGAGGACCTGGCTTCAGTTGCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACTGGAGAGATGGCTCACAGAGGACCTGGCTTCAGTTGCTCATC  50

seq1  ATCTGTGGGGTCGCTCACTATGATCTTTAACTTCAGTTCAAGGGGACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGGGTCGCTCACTATGATCTTTAACTTCAGTTCAAGGGGACCTG  100

seq1  TTGCTCTGGTCTAGCTTCTGACGGCTCCAAGTATGCAAGTGGTTCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGGTCTAGCTTCTGACGGCTCCAAGTATGCAAGTGGTTCACACA  150

seq1  TGAACTTGTAGGCAAATACTCATACACATAGAAACATTAATTACACCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGTAGGCAAATACTCATACACATAGAAACATTAATTACACCTAG  200

seq1  GTCCCAGAGACAAAGCCACCAACCAAAGAGCATACATGGATGGGCTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGACAAAGCCACCAACCAAAGAGCATACATGGATGGGCTGGTC  250

seq1  TGTGGCACATATGTAGCAGAGGACCTCCTTGTCTGACCTCAGTGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACATATGTAGCAGAGGACCTCCTTGTCTGACCTCAGTGGGAAAG  300

seq1  GATACACCTAATCCTGTAGAGACTTGATGTTCCAGGGGAGAGGGATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACCTAATCCTGTAGAGACTTGATGTTCCAGGGGAGAGGGATGCAA  350

seq1  GGGGGTGGAGGGTAGAAGAGGGTGGGTATGTGGGGGAGCACCCTCTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGAGGGTAGAAGAGGGTGGGTATGTGGGGGAGCACCCTCTCAGA  400

seq1  GGCAAGGGGGAGGCTAGATAGGAGGAAGAACTCTTGGAGGGGAGCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGGGAGGCTAGATAGGAGGAAGAACTCTTGGAGGGGAGCAGGGA  450

seq1  ATGGGGGCAACCTTTAGAATGTAAATAAGTAAAGTAATTAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGCAACCTTTAGAATGTAAATAAGTAAAGTAATTAAAAAAAAAAA  500

seq1  GAAAGAAAAAAATTAAAGGAAAATCTTTAGCCAGGCACAGTGGCACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAATTAAAGGAAAATCTTTAGCCAGGCACAGTGGCACATAA  550

seq1  CTGTAATGCCAGCAATCCAAGAGGGAGAGAAACGGACGGGTCCCTGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATGCCAGCAATCCAAGAGGGAGAGAAACGGACGGGTCCCTGTGAG  600

seq1  TTCATGGCAGTCCTGGGATACATAGTGAATTC  632
      ||||||||||||||||||||||||||||||||
seq2  TTCATGGCAGTCCTGGGATACATAGTGAATTC  632


seq1: chr16_27322042_27323170
seq2: B6Ng01-216H15.g_67_1191

seq1  GAATTCAGAGCAAGTGACTTAGATATTTTTAAAAGTTAATAAGATCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCAAGTGACTTAGATATTTTTAAAAGTTAATAAGATCTGTA  50

seq1  TTCCTCAAAAAAATAAAAAAGTAAAAATTAATTTATTATCACTACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAAAAATAAAAAAGTAAAAATTAATTTATTATCACTACAAACA  100

seq1  TTTTAATTTCATCATTGCATCAACATGAGATATTATTGTATAAAATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCATCATTGCATCAACATGAGATATTATTGTATAAAATATAA  150

seq1  AGTTGGTTGCATGCTGAATTTTACATAGTTTTGGCCAAACCTTTTATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTGCATGCTGAATTTTACATAGTTTTGGCCAAACCTTTTATTAC  200

seq1  AATAGGACACAAAATTATGGGGTTTTTTTATTATATTAGTTGGAAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGACACAAAATTATGGGGTTTTTTTATTATATTAGTTGGAAGACTA  250

seq1  AAAACCCTTTCCAGATGTTTCAGTTCCTGTTATTTTGTCTGTGGTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTTTCCAGATGTTTCAGTTCCTGTTATTTTGTCTGTGGTCTTTT  300

seq1  GTTCTCTCAAGAAGATGCTTTTTCAGGGCTTGGTAGGCTGTGACCATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTCAAGAAGATGCTTTTTCAGGGCTTGGTAGGCTGTGACCATTGG  350

seq1  CTTCATACAGTAGTCAAGAGTATTGCAGCCAGATACTGCTGACTGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATACAGTAGTCAAGAGTATTGCAGCCAGATACTGCTGACTGAATAA  400

seq1  TGTTCTAAGATTCTTGCAGGCCACAGGTATAGGCACCTGTTACACCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGATTCTTGCAGGCCACAGGTATAGGCACCTGTTACACCCCTG  450

seq1  GCACAGTCCTAGGATGTTCAGAATCCCCAGCCCTTAACAGCAGGGAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCCTAGGATGTTCAGAATCCCCAGCCCTTAACAGCAGGGAGTAG  500

seq1  TACAAGTTCTGGCCCTAAAGTGTCTAAGGTTCGTAAGGCCTGCCAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTTCTGGCCCTAAAGTGTCTAAGGTTCGTAAGGCCTGCCAAATGT  550

seq1  CTCTGGTATAATTCCAAAGACTGTGATTTTACTTTCCTAGCTGTTTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTATAATTCCAAAGACTGTGATTTTACTTTCCTAGCTGTTTAGAA  600

seq1  GCATGTGACCTTCAAACTCAGGTCCCTGATCATTCACACCTTCTCTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGACCTTCAAACTCAGGTCCCTGATCATTCACACCTTCTCTTGAC  650

seq1  TGCTTCCATTTATTTTGTTTCTGCCTTGGAGGATCTCTGGACAAACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCATTTATTTTGTTTCTGCCTTGGAGGATCTCTGGACAAACTCTC  700

seq1  CAATTATCTCTTTCTGCTGTGGTGGTCACAGCTGCCCTTGAAGAGAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATCTCTTTCTGCTGTGGTGGTCACAGCTGCCCTTGAAGAGAAAGT  750

seq1  AACCAGCATTGATTTGTACCTACCTTGGTGCCTGCTACCCCTCTGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCATTGATTTGTACCTACCTTGGTGCCTGCTACCCCTCTGCTGCC  800

seq1  AGCTCCTGTCTTTGTTGTAAAAATTGTGAAGTGTTTCTGAAGCTCTGCCT  850
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  AGCTCCTGTCTTTGTTTGTAAAATTGTGAAGTGTTTCTGAAGCTCTGCCT  850

seq1  TGCCTCTGCAACCATAAAGGTGGCAGGAAAAGCCACTGCCAGAGAAGAAG  900
      ||||||||||||||| |||||||||||||||||||||||||||||   ||
seq2  TGCCTCTGCAACCAT-AAGGTGGCAGGAAAAGCCACTGCCAGAGA--GAG  897

seq1  TTTTGCAGTGGACCTAACATTGCATGGGCAGAAGAGGATTTCTATCAGTC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTGGACCT-ACATTGCATGGGCAGAAGAGGATTTCTATCAGTC  946

seq1  AGTAGTTTAGCAGATGAGCTCAATGAGCTTAAACAGCCAGCAATACAGAC  1000
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTAGTTTAGCAGATGAGCTC-ATGAGCTTAAACAGCCAGCAATACAGAC  995

seq1  TGCTTACAGAAAATCTTCAT-GAAAATATGTTTACAC-TAATCAT-GGCA  1047
      ||||||||| |||||||||| |||| | ||||||||| ||||||| ||||
seq2  TGCTTACAG-AAATCTTCATGGAAATTTTGTTTACACTTAATCATGGGCA  1044

seq1  TTGCTGGTTTTATACCAAAAGCAATGGTCCATC-TGCTAGGCCACCCCTC  1096
      ||||||| |||||||  || ||| ||||| ||| ||||||||||||||||
seq2  TTGCTGG-TTTATAC--AAGGCATTGGTCAATCTTGCTAGGCCACCCCTC  1091

seq1  TGAGCCTGGTGGGAGTAA-TTGGAG-GGGAGATCC  1129
      |||| |||  |||||||| |||||| |||||||||
seq2  TGAG-CTGTGGGGAGTAATTTGGAGAGGGAGATCC  1125


| Home | SequenceCutter | Blast | Download |