BAC Information

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BAC

Clone NameB6Ng01-216O04
Chromosome15 (Build37)16 (Build37)
Map Location 102,609,750 - 102,610,06395,018,571 - 95,018,710
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKrt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
Downstream geneLOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216O04.bB6Ng01-216O04.g
ACCGA033457GA033458
length314439
definitionB6Ng01-216O04.b B6Ng01-216O04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,609,750 - 102,610,063)(95,018,571 - 95,018,710)
sequence
tcaggacccagacaagactgaagagaagcaaaattgggatcagcagctga
ccagttctagatgctagaaggttggggagtagctatttgtcaaagaaacc
ttctaaaggatgaatttagggagcaagacagtgctggtcttacaatgagg
ggactcttgtactgtgaaaatgagtaaacctcggttcaatgcaactgggt
attaagactccttatgtgcctcgcacttggctgggtgctgaaggcagtaa
ataagatacacactccttaccaggaatagacagtcaggtgtgtgtattgg
tggatgagggggag
actgtagggctggagagatggctcagcggttaagagcaccgactgttctt
tcagaggtcctgagttcaattcccagcaaccatatggtggctcacaacca
tctgtaatgggatctgatgccctcttcaggtgtgtctgaagacagctaca
gtgtactcatgtaaataaattaataaatctgaagaaggagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagcagaagaagaagaatatagaattcactggcccatactggcttgaatg
tgtaacagttttctgtggaggtctctgagtgctggaattacaggtatgag
ctaccacacccagcttaattttccagggctctgaagactctgaaccttcg
gggccatccgagattgcttatcagataaagactctggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102609750_102610063
seq2: B6Ng01-216O04.b_42_355 (reverse)

seq1  CTCCCCCTCATCCACCAATACACACACCTGACTGTCTATTCCTGGTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCATCCACCAATACACACACCTGACTGTCTATTCCTGGTAAGG  50

seq1  AGTGTGTATCTTATTTACTGCCTTCAGCACCCAGCCAAGTGCGAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATCTTATTTACTGCCTTCAGCACCCAGCCAAGTGCGAGGCACA  100

seq1  TAAGGAGTCTTAATACCCAGTTGCATTGAACCGAGGTTTACTCATTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTCTTAATACCCAGTTGCATTGAACCGAGGTTTACTCATTTTCA  150

seq1  CAGTACAAGAGTCCCCTCATTGTAAGACCAGCACTGTCTTGCTCCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAGAGTCCCCTCATTGTAAGACCAGCACTGTCTTGCTCCCTAAA  200

seq1  TTCATCCTTTAGAAGGTTTCTTTGACAAATAGCTACTCCCCAACCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTTAGAAGGTTTCTTTGACAAATAGCTACTCCCCAACCTTCTA  250

seq1  GCATCTAGAACTGGTCAGCTGCTGATCCCAATTTTGCTTCTCTTCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAGAACTGGTCAGCTGCTGATCCCAATTTTGCTTCTCTTCAGTCT  300

seq1  TGTCTGGGTCCTGA  314
      ||||||||||||||
seq2  TGTCTGGGTCCTGA  314

seq1: chr16_95018571_95018710
seq2: B6Ng01-216O04.g_80_219 (reverse)

seq1  GCTGTCTTCAGACACACCAGAAGGGGGCATCGGATACCATTACAGATGGT  50
      |||||||||||||||||| |||| ||||||| ||| ||||||||||||||
seq2  GCTGTCTTCAGACACACCTGAAGAGGGCATCAGATCCCATTACAGATGGT  50

seq1  TGTGAGCCACCATGTGGCTGCTCGGATTTGAACTCAGGACCTCTGGAAGA  100
      ||||||||||||| ||| |||| ||| |||||||||||||||||| ||||
seq2  TGTGAGCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGA  100

seq1  GCAGTCGGTGCTTTTAACCGCTGAGCCATCTCTTCAGCCC  140
       ||||||||||| |||||||||||||||||||| ||||||
seq2  ACAGTCGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCC  140