BAC Information

Click to search

BAC

Clone NameB6Ng01-219I17
Chromosome16 (Build37)
Map Location 4,488,252 - 4,702,593
singlet/doubletdoublet
Overlap geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneNmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219I17.bB6Ng01-219I17.g
ACCGA035347GA035348
length1,033758
definitionB6Ng01-219I17.b B6Ng01-219I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,488,252 - 4,489,279)(4,701,837 - 4,702,593)
sequence
gaattctctagtgtcttcaaaagaaagatggtggtttaggagggtgctca
ctagcagagcatttacatagtatgtgcgaggccctgggttcagtccccac
tactgcaaaaatagaaaacaaaaccaaatctgggcaaagaagcaggtaga
ggctgtagacagagatgctgtttcttattgctgctttctggtcctctaac
ttcttttctgaactagctgcactgagcacctgtgctctccagacttttgt
cttcctgagcctgcagacagacctcaaaatacagtcttctttcttaaact
ttttttaaatttatttcttataattttgtatactgtcctgactcaaaagt
ctgaagtacaaaaagccccagtctgtctaggccacaatacactctctatt
aggtaactaatgctgggccagttggggtgggttttttttttttttttcta
ttttcttttgagaggacgttatatttcccaggatgttctcaaagtcctgg
gctcaagaatcaagtgattctcttgcctcagcctccagggtagctgggcc
tatctatatttgtgtaccactaccctggacactaatgctaatttctggca
tttttcagctgccttactgtgtatacactgtgttgtataccagtgttgta
cattcatttttgtatagcatgaatcccttctgcacctggcttttggatat
actggttttgtttcctttgggagtaaagcaaagtcctaaaagatgatggc
ttctgtatggtgagcacaagtcgtgggctggcccttccctcttgtgtgta
agcacacatgagaggcactcagcctgggaacaccggcgattaggcatctc
aagagagttatgccagttatggatttttccaaaaagccagcgctggttat
gtgagacagagcttcgagtgttgctgttccattctgcacagcagggggca
ttggtgggcatatgtgggaagaccagcaatagcttgacggatagggggct
ggcaggaagctggcaggacattaggacagataa
gaattcttggaggtaattgcccaaagtcacagggcaagtggcagaaccaa
ggctagaactcaggaaacaacttttaggcacagctgccgggcagcaagtg
ctcctgggctttcttaaatatatggatgcagtgaataggagacgcaccca
tgagagatggctgtatacccacgagtcccctcttccaatgacttttgggg
gcctatgaaaactcaagttctgaaatgtctgtcaatagagactcagaggt
ccctcacaccgccatgtcagtcccaggtaccttaccagtgcttgtgtggg
tgactccattaaccgtcccctccacgtcagtctcatcctcggcatagctc
aggatcaggttctgctgcctactgctcagcctcctgtgaaccaacaacag
ttagtggccgagcacttcctccaggcagcccttgaaagcacataagcaca
tacatgtctgactcgcgcagaggcacgcactgagccagtggtgaggaact
gatggccaagtcaacgtttcagaaaagggctctagccagcctacacatgg
caagtgtggctctggcaggccttacccttcactattctctcttccttgca
aaactgttagatcacattcctaaagctagccatcaaggcctattccctta
tttggccacttcctcctcctgacgctgaccaccaaggtttcaactatcaa
agaattggagtacagcaatcaaaattaaacacctcatcctaacacggggg
gggggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4488252_4489279
seq2: B6Ng01-219I17.b_46_1075

seq1  GAATTCTCTAGTGTCTTCAAAAGAAAGATGGTGGTTTAGGAGGGTGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTGTCTTCAAAAGAAAGATGGTGGTTTAGGAGGGTGCTCA  50

seq1  CTAGCAGAGCATTTACATAGTATGTGCGAGGCCCTGGGTTCAGTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGAGCATTTACATAGTATGTGCGAGGCCCTGGGTTCAGTCCCCAC  100

seq1  TACTGCAAAAATAGAAAACAAAACCAAATCTGGGCAAAGAAGCAGGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAAAAATAGAAAACAAAACCAAATCTGGGCAAAGAAGCAGGTAGA  150

seq1  GGCTGTAGACAGAGATGCTGTTTCTTATTGCTGCTTTCTGGTCCTCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGACAGAGATGCTGTTTCTTATTGCTGCTTTCTGGTCCTCTAAC  200

seq1  TTCTTTTCTGAACTAGCTGCACTGAGCACCTGTGCTCTCCAGACTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTGAACTAGCTGCACTGAGCACCTGTGCTCTCCAGACTTTTGT  250

seq1  CTTCCTGAGCCTGCAGACAGACCTCAAAATACAGTCTTCTTTCTTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGCCTGCAGACAGACCTCAAAATACAGTCTTCTTTCTTAAACT  300

seq1  TTTTTTAAATTTATTTCTTATAATTTTGTATACTGTCCTGACTCAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTTATTTCTTATAATTTTGTATACTGTCCTGACTCAAAAGT  350

seq1  CTGAAGTACAAAAAGCCCCAGTCTGTCTAGGCCACAATACACTCTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTACAAAAAGCCCCAGTCTGTCTAGGCCACAATACACTCTCTATT  400

seq1  AGGTAACTAATGCTGGGCCAGTTGGGGTGGGTTTTTTTTTTTTTTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACTAATGCTGGGCCAGTTGGGGTGGGTTTTTTTTTTTTTTTTCTA  450

seq1  TTTTCTTTTGAGAGGACGTTATATTTCCCAGGATGTTCTCAAAGTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGAGAGGACGTTATATTTCCCAGGATGTTCTCAAAGTCCTGG  500

seq1  GCTCAAGAATCAAGTGATTCTCTTGCCTCAGCCTCCAGGGTAGCTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAATCAAGTGATTCTCTTGCCTCAGCCTCCAGGGTAGCTGGGCC  550

seq1  TATCTATATTTGTGTACCACTACCCTGGACACTAATGCTAATTTCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATATTTGTGTACCACTACCCTGGACACTAATGCTAATTTCTGGCA  600

seq1  TTTTTCAGCTGCCTTACTGTGTATACACTGTGTTGTATACCAGTGTTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCTGCCTTACTGTGTATACACTGTGTTGTATACCAGTGTTGTA  650

seq1  CATTCATTTTTGTATAGCATGAATCCCTTCTGCACCTGGCTTTTGGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTTTGTATAGCATGAATCCCTTCTGCACCTGGCTTTTGGATAT  700

seq1  ACTGGTTTTG-TTCCTTTGGGAGTAAAGCAAAGTCCTAAAAGATGATGGC  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTTGTTTCCTTTGGGAGTAAAGCAAAGTCCTAAAAGATGATGGC  750

seq1  TTCTGTATGGTGAGCACAAGTCGTGGGCTGGCCCTTCCCTCTTGTGTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATGGTGAGCACAAGTCGTGGGCTGGCCCTTCCCTCTTGTGTGTA  800

seq1  AGCACACATGAGAGGCACTCAGCCTGGGAACA-CGGCGATTAGGCATCTC  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCACACATGAGAGGCACTCAGCCTGGGAACACCGGCGATTAGGCATCTC  850

seq1  AAGAGAGTTATGCCAGTTATGGATTTTTCCAAAAAGCCAGCGCTGGTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTTATGCCAGTTATGGATTTTTCCAAAAAGCCAGCGCTGGTTAT  900

seq1  GTGAGACAGAGCTTCGAGTGTTGCTGTTCCAATTCTGCACAGCAGGGGGC  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGAGACAGAGCTTCGAGTGTTGCTGTTCC-ATTCTGCACAGCAGGGGGC  949

seq1  ATT-GTGGGCATATGTGGG-AGACCAGCAATAAGCTTGAAGGATAGGGGG  996
      ||| ||||||||||||||| ||||||||||| ||||||| ||||||||||
seq2  ATTGGTGGGCATATGTGGGAAGACCAGCAAT-AGCTTGACGGATAGGGGG  998

seq1  CATGCAGGAAGCTGGCAGGACATTAGGACAGA  1028
      |  |||||||||||||||||||||||||||||
seq2  CTGGCAGGAAGCTGGCAGGACATTAGGACAGA  1030

seq1: chr16_4701837_4702593
seq2: B6Ng01-219I17.g_70_827 (reverse)

seq1  GGACCCCCCCCCCGTGTTAGGATGAGGTGTTTAATTTTGATTGCTGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCCCCCCGTGTTAGGATGAGGTGTTTAATTTTGATTGCTGTACT  50

seq1  CCAATTCTTTGATAGTTG-AACCTTGGTGGTCAGCGTCAGGAGGAGGAAG  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAATTCTTTGATAGTTGAAACCTTGGTGGTCAGCGTCAGGAGGAGGAAG  100

seq1  TGGCCAAATAAGGGAATAGGCCTTGATGGCTAGCTTTAGGAATGTGATCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAATAAGGGAATAGGCCTTGATGGCTAGCTTTAGGAATGTGATCT  150

seq1  AACAGTTTTGCAAGGAAGAGAGAATAGTGAAGGGTAAGGCCTGCCAGAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTTGCAAGGAAGAGAGAATAGTGAAGGGTAAGGCCTGCCAGAGC  200

seq1  CACACTTGCCATGTGTAGGCTGGCTAGAGCCCTTTTCTGAAACGTTGACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGCCATGTGTAGGCTGGCTAGAGCCCTTTTCTGAAACGTTGACT  250

seq1  TGGCCATCAGTTCCTCACCACTGGCTCAGTGCGTGCCTCTGCGCGAGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCAGTTCCTCACCACTGGCTCAGTGCGTGCCTCTGCGCGAGTCA  300

seq1  GACATGTATGTGCTTATGTGCTTTCAAGGGCTGCCTGGAGGAAGTGCTCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTATGTGCTTATGTGCTTTCAAGGGCTGCCTGGAGGAAGTGCTCG  350

seq1  GCCACTAACTGTTGTTGGTTCACAGGAGGCTGAGCAGTAGGCAGCAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAACTGTTGTTGGTTCACAGGAGGCTGAGCAGTAGGCAGCAGAAC  400

seq1  CTGATCCTGAGCTATGCCGAGGATGAGACTGACGTGGAGGGGACGGTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTGAGCTATGCCGAGGATGAGACTGACGTGGAGGGGACGGTTAA  450

seq1  TGGAGTCACCCACACAAGCACTGGTAAGGTACCTGGGACTGACATGGCGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCACCCACACAAGCACTGGTAAGGTACCTGGGACTGACATGGCGG  500

seq1  TGTGAGGGACCTCTGAGTCTCTATTGACAGACATTTCAGAACTTGAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGACCTCTGAGTCTCTATTGACAGACATTTCAGAACTTGAGTTT  550

seq1  TCATAGGCCCCCAAAAGTCATTGGAAGAGGGGACTCGTGGGTATACAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGCCCCCAAAAGTCATTGGAAGAGGGGACTCGTGGGTATACAGCC  600

seq1  ATCTCTCATGGGTGCGTCTCCTATTCACTGCATCCATATATTTAAGAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATGGGTGCGTCTCCTATTCACTGCATCCATATATTTAAGAAAG  650

seq1  CCCAGGAGCACTTGCTGCCCGGCAGCTGTGCCTAAAAGTTGTTTCCTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGCACTTGCTGCCCGGCAGCTGTGCCTAAAAGTTGTTTCCTGAG  700

seq1  TTCTAGCCTTGGTTCTGCCACTTGCCCTGTGACTTTGGGCAATTACCTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCTTGGTTCTGCCACTTGCCCTGTGACTTTGGGCAATTACCTCC  750

seq1  AAGAATTC  757
      ||||||||
seq2  AAGAATTC  758