BAC Information

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BAC

Clone NameB6Ng01-221D23
Chromosome16 (Build37)
Map Location 71,871,436 - 71,872,537
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221D23.bB6Ng01-221D23.g
ACCGA036589GA036590
length1,2091,146
definitionB6Ng01-221D23.b B6Ng01-221D23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgattagtactccattgtgtaaatgcacc
acattttctgtatccattcctctgttaaaagacatctgagttctttccag
cttctggctattataaataaggctgctatgaatatagtggagcacatgtc
ctggttatatattggagcatttttgtgtatatgcccaggagtggtattgc
tgggtccttatgtgcaatttttctgaggaactaccaaactgatttccaga
gtggttgtacaagattgcaatcccacaaacaatggaggagtcttcctctt
tctctacatccttgccagcttctgctgtcacctgagttcttgatattaac
cattctgactggtgtcaggctgaatttcaggattgttttgatttttctga
tttgcacttcctgatgactaaggatgctgaacatttctttaggtgtttct
caacctttaggtttttctgagttgagaattctttgttcagctctgtaccc
cattattaatagggttatttcattctctgaagtttaacttattcagttct
ttgaatataatacatattggccctctatcagatgtaggtttggtaagttt
ttttttttctcccaatttgttagtttgccattttgtcctactgacagtgt
cctttgccttatagaagttttgcaatcttatgaggtctcttttatcaatt
cttgatcttagagcataaaacattggtgttctgttcaggaattcttcccc
tgtgcccatgtattcgaagcttttccccaatttctcttctactactttca
gtgtgtctggttttatgtagaggtctttgatccacttgggacttgagctt
tgtacaaggagatacgattttgcatactttctacatgctgatcatcagga
gaaccaacattttctgtttaaatatgcagctagagccttgggtctctcca
tgtgtactctttcctcggtagtttagtccctggatgctctgagagtctgg
ttagttgatgttgttatcctcctgtggggctgcaaccccttagctcttca
gttcttttttctaacttccctttggggacccttatgcctcaatctgaatg
ttggcctgggagcatccactcttctataatttgttcaagcacttgaacga
gcatctcagaaacagctatattggaggcatatatggctctacaaaccata
cgttctctt

gaattcagaggcaatttttccaaatgattaattcaaggagaagcagagag
aagccagtttgaatcagtaagcttagagaagacttttgtgccagaacaac
ttagttggttcagccaattaagattccggaagaactagaaaaagcgactg
cattcagtagttagccactgagacagcaattacatatggtaaataaacat
atggtaaagttactttacatgatatgggacactattaatgagacctagct
atgtttgcacacaggagcctagcaaaccatcatcagtgatgcttcaccca
ataattcatggaaacagatacagagatacacagccaaacattgggcagaa
catggttaccctcttcctgtggaagaaatgagcaaggattgtaggatcca
gagggatcaggaacaccaaaaaacaaacaaacaaacaaacaaacaaacaa
aatccctacagaacttaggcccataggtttccacaaagggtttaagattt
ttatgtcaatatttcatagtattagtctagtaagttgttccaacaccagg
aaatccatgctcatcaagcatactctccccccccccacacacacacaaac
ctgtacatgcacacacacacacacacatacacacgcgcacacacacacac
acacacacgcacacacacacacacacacacacacacatacacacacacac
actagcatacacacatacacacacacacacacactagcatacacacatac
acacacgcacacacacactagcatacacacatacacacacgcacacacat
acacacacacacgcacacacacacacacacacacagcacaacacacacac
acacacagggcacacgcacaagcacacacacacacacacaggaacaaaac
aaatgataaagtaggagggaggctgggctagaaaagaagcaaaagttcct
gccagaactaaagggagggaaaagagaagagtaaatttggtggagaaatc
cgaaatcagaatcctctttatattacatggtattaaaattgggcaaaaaa
taggttttttggaggtacttgatgccttgggctttggggacaaataattt
gaatttagaaagttatttaaactgggggggtgggggggggagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71871436_71872537
seq2: B6Ng01-221D23.g_65_1210

seq1  GAATTCAGAGGCAATTTTTCCAAATGATTAATTCAAGGAGAAGCAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAATTTTTCCAAATGATTAATTCAAGGAGAAGCAGAGAG  50

seq1  AAGCCAGTTTGAATCAGTAAGCTTAGAGAAGACTTTTGTGCCAGAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTTTGAATCAGTAAGCTTAGAGAAGACTTTTGTGCCAGAACAAC  100

seq1  TTAGTTGGTTCAGCCAATTAAGATTCCGGAAGAACTAGAAAAAGCGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGTTCAGCCAATTAAGATTCCGGAAGAACTAGAAAAAGCGACTG  150

seq1  CATTCAGTAGTTAGCCACTGAGACAGCAATTACATATGGTAAATAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTAGTTAGCCACTGAGACAGCAATTACATATGGTAAATAAACAT  200

seq1  ATGGTAAAGTTACTTTACATGATATGGGACACTATTAATGAGACCTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAAAGTTACTTTACATGATATGGGACACTATTAATGAGACCTAGCT  250

seq1  ATGTTTGCACACAGGAGCCTAGCAAACCATCATCAGTGATGCTTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCACACAGGAGCCTAGCAAACCATCATCAGTGATGCTTCACCCA  300

seq1  ATAATTCATGGAAACAGATACAGAGATACACAGCCAAACATTGGGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATGGAAACAGATACAGAGATACACAGCCAAACATTGGGCAGAA  350

seq1  CATGGTTACCCTCTTCCTGTGGAAGAAATGAGCAAGGATTGTAGGATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTACCCTCTTCCTGTGGAAGAAATGAGCAAGGATTGTAGGATCCA  400

seq1  GAGGGATCAGGAACACCAAAAAACAAACAAACAAACAAACAAACAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCAGGAACACCAAAAAACAAACAAACAAACAAACAAACAAACAA  450

seq1  AATCCCTACAGAACTTAGGCCCATAGGTTTCCACAAAGGGTTTAAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTACAGAACTTAGGCCCATAGGTTTCCACAAAGGGTTTAAGATTT  500

seq1  TTATGTCAATATTTCATAGTATTAGTCTAGTAAGTTGTTCCAACACCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAATATTTCATAGTATTAGTCTAGTAAGTTGTTCCAACACCAGG  550

seq1  AAATCCATGCTCATCAAGCATACTCTCCCCCCCCCCACACACACACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATGCTCATCAAGCATACTCTCCCCCCCCCCACACACACACAAAC  600

seq1  CTGTACATGCACACACACACACACACATACACACGCGCACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATGCACACACACACACACACATACACACGCGCACACACACACAC  650

seq1  ACACACACGCACACACACACACACACACACACACACATACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGCACACACACACACACACACACACACACATACACACACACAC  700

seq1  ACTAGCATACACACATACACACACACACACACACTAGCATACACACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCATACACACATACACACACACACACACACTAGCATACACACATAC  750

seq1  ACACACGCACACACACACTAGCATACACACATACACACACGCACACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGCACACACACACTAGCATACACACATACACACACGCACACACAT  800

seq1  ACACACACACACGCACACACACACACACACACACAGCACAACACACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACGCACACACACACACACACACACAGCACAACACACACAC  850

seq1  ACACACA-GGCACACGCACAAGCACACACACACACACACA-GCACAAAAC  898
      ||||||| |||||||||||||||||||||||||||||||| | |||||||
seq2  ACACACAGGGCACACGCACAAGCACACACACACACACACAGGAACAAAAC  900

seq1  AAATGATAAAGTAGGA-GGAGGCT-GGCTAG-AAAGAAGCAGAAGTT-CT  944
      |||||||||||||||| ||||||| |||||| ||||||||| ||||| ||
seq2  AAATGATAAAGTAGGAGGGAGGCTGGGCTAGAAAAGAAGCAAAAGTTCCT  950

seq1  G-CAG-ACTAAA-GGAGGG-AAAGAG-AGAGTAA--TTTGTGGAG-AATC  986
      | ||| |||||| |||||| |||||| |||||||  || |||||| ||||
seq2  GCCAGAACTAAAGGGAGGGAAAAGAGAAGAGTAAATTTGGTGGAGAAATC  1000

seq1  --GAATCAGAAT-CTC-TTATA-TACAT-GTAT--AAATTGG--CAAAAA  1026
         ||||||||| ||| ||||| ||||| ||||  |||||||   |||||
seq2  CGAAATCAGAATCCTCTTTATATTACATGGTATTAAAATTGGGCAAAAAA  1050

seq1  TAGGTTTTT--GA-GTAC-TGATGC--TTGGCTT--GGGACAA--TATTT  1066
      |||||||||  || |||| ||||||  | |||||  |||||||   ||||
seq2  TAGGTTTTTTGGAGGTACTTGATGCCTTGGGCTTTGGGGACAAATAATTT  1100

seq1  GATTTTAG-AAGTAATT--AAATG-------GGGTGGGGGAGTAGA  1102
      || ||||| |||| |||  || ||       ||| |||||||||||
seq2  GAATTTAGAAAGTTATTTAAACTGGGGGGGTGGGGGGGGGAGTAGA  1146


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