BAC Information

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BAC

Clone NameB6Ng01-222F16
Chromosome16 (Build37)
Map Location 77,137,939 - 77,315,906
singlet/doubletdoublet
Overlap genenone
Upstream gene4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik, LOC665120, Usp25
Downstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F16.bB6Ng01-222F16.g
ACCGA037396GA037397
length1,117553
definitionB6Ng01-222F16.b B6Ng01-222F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,314,781 - 77,315,906)(77,137,939 - 77,138,491)
sequence
gaattcttctctagagagaataaatgccacacacaaaaatatcctgtgat
taagaaattcatgtgtcatacccaggaaaagaagccagctgccacccaac
gattccaatgaaagcctatttttaaatacaaattctaatcaagtatttag
ttcctcattcaaaaatgtggttggacagccagggcttaccactgggatgc
catccaagagaaaatacaaaacaaaataagtgaaacaaggcaaataactc
agagaagcagagaaaatgtggtaagggggaaatttccaacaaatgatagc
ttctccaaatgtgaaataaaaatacccctctaaaacaatgaaaagaggaa
ataaagagagaagggagaagttaatgaaaaggatagttataatttaacat
atgactgtaattacaagtgtataacaacagtctagaaaaatataaaatat
aaagaatgaaaagtaagaaaaaactgacaaacaaaaaacaggaatgggaa
tttcttttctgtaaatgtatttatgaagataacacaaactgcacgcttat
tcaggatgaagatgaaagaaaatgttaatgaaagttatgaaagttacaat
acaaaatgtggggttttttttgcataatattccaaatagataagagaaag
caggtacttcaccacaggactgaagagagactcatcaggagacacattca
aataacacactttacatggagtaaatcaattctcccacaagctggggctg
gcttggagagtattgcagaaagtttaaagatgacagggaacagctgagaa
tcccaagtggagattattttcagcataaaggaatgtttgatgtttgatga
aaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaacc
ctgagattccacctcacaccagtcagaatggctaagatcataaattcagg
tgacagcagatgctggcgaggatgtggagaaagaagacactcctccattg
ttgatgggattgcaagcttgtacaccactctggaaatcagtctggcggtt
tcctaagaaaatgacatagtactacggaggatccagcattactctctggc
aatatcagaagatgtcc
gaattcctactgactcttgtcctggaaaggacttgggaactgagctactg
taaattaggatgctcatctccagatcccgtggacagggaaatgcaggctt
tgctacagcattattatattgatggttgtaagcatttctgaatggcttct
tcaatttgagccttgaatatatgcaaaaaagtgaaagcaattgttgggaa
caaaataaggggggggggcctgtgggacctggggaaaagtggggaggaaa
aggggcctaacatcttgccagagttcctgtgctctgggcaggtggatgta
ggcagagctgcaggacacttttccactcgaccctggatgagcatctaagg
ctgaccccactcagtggggtgtggagaagaggcagcccccgaccaaggaa
cacggagctaccttgctaaagccccagggttgtagaagagagggaatagg
ggaagaagttcccaacattaaccagagtgcttagcggatcttgatggagc
agagactctatatgttttaagagctttattatagaaatgcagggagaaag
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_77314781_77315906
seq2: B6Ng01-222F16.b_46_1162 (reverse)

seq1  GGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGT  50
      ||||||||||||   ||||  ||| |||| ||| ||||||||||||| ||
seq2  GGACATCTTCTG---ATATTGCCA-GAGA-GTAATGCTGGATCCTCC-GT  44

seq1  AGTACTATGTCCAATTTTCTAAGG-AACCGCCAGACTGATTTCCAGAGTG  99
      |||||||||||  ||||||| ||| |||||||||||||||||||||||||
seq2  AGTACTATGTC--ATTTTCTTAGGAAACCGCCAGACTGATTTCCAGAGTG  92

seq1  GTTGTACAAGCTTGCAATCCCATCAACAATGGAGGAGTGTTCTTCTTTCT  149
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  G-TGTACAAGCTTGCAATCCCATCAACAATGGAGGAGTG-TCTTCTTTCT  140

seq1  CCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTATGATCTTAGCCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTATGATCTTAGCCAT  190

seq1  TCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCC  240

seq1  TGATGATTAAGGATGTTGAACATTTTTTCATCAAACATCAAACATTCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTAAGGATGTTGAACATTTTTTCATCAAACATCAAACATTCCTT  290

seq1  TATGCTGAAAATAATCTCCACTTGGGATTCTCAGCTGTTCCCTGTCATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGAAAATAATCTCCACTTGGGATTCTCAGCTGTTCCCTGTCATCT  340

seq1  TTAAACTTTCTGCAATACTCTCCAAGCCAGCCCCAGCTTGTGGGAGAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTTCTGCAATACTCTCCAAGCCAGCCCCAGCTTGTGGGAGAATT  390

seq1  GATTTACTCCATGTAAAGTGTGTTATTTGAATGTGTCTCCTGATGAGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTCCATGTAAAGTGTGTTATTTGAATGTGTCTCCTGATGAGTCT  440

seq1  CTCTTCAGTCCTGTGGTGAAGTACCTGCTTTCTCTTATCTATTTGGAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTCCTGTGGTGAAGTACCTGCTTTCTCTTATCTATTTGGAATA  490

seq1  TTATGCAAAAAAAACCCCACATTTTGTATTGTAACTTTCATAACTTTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAAAAAAACCCCACATTTTGTATTGTAACTTTCATAACTTTCAT  540

seq1  TAACATTTTCTTTCATCTTCATCCTGAATAAGCGTGCAGTTTGTGTTATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTCTTTCATCTTCATCCTGAATAAGCGTGCAGTTTGTGTTATC  590

seq1  TTCATAAATACATTTACAGAAAAGAAATTCCCATTCCTGTTTTTTGTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATACATTTACAGAAAAGAAATTCCCATTCCTGTTTTTTGTTTG  640

seq1  TCAGTTTTTTCTTACTTTTCATTCTTTATATTTTATATTTTTCTAGACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTTTCTTACTTTTCATTCTTTATATTTTATATTTTTCTAGACTG  690

seq1  TTGTTATACACTTGTAATTACAGTCATATGTTAAATTATAACTATCCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATACACTTGTAATTACAGTCATATGTTAAATTATAACTATCCTTT  740

seq1  TCATTAACTTCTCCCTTCTCTCTTTATTTCCTCTTTTCATTGTTTTAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACTTCTCCCTTCTCTCTTTATTTCCTCTTTTCATTGTTTTAGAG  790

seq1  GGGTATTTTTATTTCACATTTGGAGAAGCTATCATTTGTTGGAAATTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTTTATTTCACATTTGGAGAAGCTATCATTTGTTGGAAATTTCC  840

seq1  CCCTTACCACATTTTCTCTGCTTCTCTGAGTTATTTGCCTTGTTTCACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCACATTTTCTCTGCTTCTCTGAGTTATTTGCCTTGTTTCACTT  890

seq1  ATTTTGTTTTGTATTTTCTCTTGGATGGCATCCCAGTGGTAAGCCCTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTGTATTTTCTCTTGGATGGCATCCCAGTGGTAAGCCCTGGC  940

seq1  TGTCCAACCACATTTTTGAATGAGGAACTAAATACTTGATTAGAATTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAACCACATTTTTGAATGAGGAACTAAATACTTGATTAGAATTTGT  990

seq1  ATTTAAAAATAGGCTTTCATTGGAATCGTTGGGTGGCAGCTGGCTTCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATAGGCTTTCATTGGAATCGTTGGGTGGCAGCTGGCTTCTTT  1040

seq1  TCCTGGGTATGACACATGAATTTCTTAATCACAGGATATTTTTGTGTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTATGACACATGAATTTCTTAATCACAGGATATTTTTGTGTGTG  1090

seq1  GCATTTATTCTCTCTAGAGAAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  GCATTTATTCTCTCTAGAGAAGAATTC  1117

seq1: chr16_77137939_77138491
seq2: B6Ng01-222F16.g_72_624

seq1  GAATTCCTACTGACTCTTGTCCTGGAAAGGACTTGGGAACTGAGCTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGACTCTTGTCCTGGAAAGGACTTGGGAACTGAGCTACTG  50

seq1  TAAATTAGGATGCTCATCTCCAGATCCCGTGGACAGGGAAATGCAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGGATGCTCATCTCCAGATCCCGTGGACAGGGAAATGCAGGCTT  100

seq1  TGCTACAGCATTATTATATTGATGGTTGTAAGCATTTCTGAATGGCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGCATTATTATATTGATGGTTGTAAGCATTTCTGAATGGCTTCT  150

seq1  TCAATTTGAGCCTTGAATATATGCAAAAAAGTGAAAGCAATTGTTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGAGCCTTGAATATATGCAAAAAAGTGAAAGCAATTGTTGGGAA  200

seq1  CAAAATAAGGGGGGGGGGCCTGTGGGACCTGGGGAAAAGTGGGGAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGGGGGGGGGGCCTGTGGGACCTGGGGAAAAGTGGGGAGGAAA  250

seq1  AGGGGCCTAACATCTTGCCAGAGTTCCTGTGCTCTGGGCAGGTGGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTAACATCTTGCCAGAGTTCCTGTGCTCTGGGCAGGTGGATGTA  300

seq1  GGCAGAGCTGCAGGACACTTTTCCACTCGACCCTGGATGAGCATCTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTGCAGGACACTTTTCCACTCGACCCTGGATGAGCATCTAAGG  350

seq1  CTGACCCCACTCAGTGGGGTGTGGAGAAGAGGCAGCCCCCGACCAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCACTCAGTGGGGTGTGGAGAAGAGGCAGCCCCCGACCAAGGAA  400

seq1  CACGGAGCTACCTTGCTAAAGCCCCAGGGTTGTAGAAGAGAGGGAATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGCTACCTTGCTAAAGCCCCAGGGTTGTAGAAGAGAGGGAATAGG  450

seq1  GGAAGAAGTTCCCAACATTAACCAGAGTGCTTAGCGGATCTTGATGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGTTCCCAACATTAACCAGAGTGCTTAGCGGATCTTGATGGAGC  500

seq1  AGAGACTCTATATGTTTTAAGAGCTTTATTATAGAAATGCAGGGAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTATATGTTTTAAGAGCTTTATTATAGAAATGCAGGGAGAAAG  550

seq1  AGA  553
      |||
seq2  AGA  553