BAC Information

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BAC

Clone NameB6Ng01-222F19
Chromosome16 (Build37)
Map Location 93,538,004 - 93,712,776
singlet/doubletdoublet
Overlap geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2
Upstream geneClic6, Runx1, EG666023, LOC100040747
Downstream geneMorc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F19.bB6Ng01-222F19.g
ACCGA037402GA037403
length1,182907
definitionB6Ng01-222F19.b B6Ng01-222F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,538,004 - 93,539,197)(93,711,873 - 93,712,776)
sequence
gaattcactgtgacgttccaagcctcttaagccttcatccagtcttctaa
gctatactgcatacctaccaacacctccctctatcaactgcagatcacca
tccaatctaaatatcagggaggcatcatcaaactcactagagcaggctcc
aggggactgtaacattctaaccccctcagtgtccactcccacatgctttg
tgctgatacgcatccccgtcctctgtcacagtgttttctcttgaagcaga
cacttctcccagaagctgtgctcagacctgactctacttattatcaagaa
agttaaggaggtagacatggtacaaaggcgagacgccagtgccaccatgc
agtggtggcaataagtcctgtcaagagaaagatgaaacccaggaagccat
atgcaatctcagtccttcctcagcctttccagagccctgcccatggatat
gtttaataagaaagttacacaatgtatatgtttaataagaaagttacaca
atgtatatgtttaataagaaagttacacaatgtaggccgggcgtggtggt
gcatgcctttaatcccagcactcaggaggcagaggcaggcagatttctga
gttcgaggccaacctggtctacaaagtgagttccaggacagccaggattg
cacagagaaacaaacactgtctaggagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagagagagagagaga
aagaaagaagttacacaatgtatatgtttaataagaaagttacacagcag
ccaaaatgtttacaaacctcttattataataactgaacctgagattaaca
ttagagtctcaaaagctatacctgttgaaccagttaaaactaataaaggc
aaccagttaagtggaatggtaaattctatccaaccaggagccttcctaca
gctcaccctgccagtccctcttcctgagttgctctatttaaccagccgaa
ttgtatacattctgccactttttatttttgctccagtttcttattactcc
ctctgttttgagaagacgccactgctgtagggcaatggtgtgtgctcaag
gcaagagtcgagaatgtctaaacctacactgataaattcaaggaccgaag
caagcgaaagtagagaaccatgcgtatctcac
gtcttttacactgagatcaaatagcactagaggggggaaaaaaagcaaga
cacctgacacttcacaggaatagcttttaaaggtggggtgtcctcaacaa
ccctacacaggcttcccgagatggggactgctgtcaccgggtgagcacct
cctccgcggcttatccgccggcgcaggggcaggctggctggtgcacgccg
gctgctgggacaccattagggaacctggaagccctgcccaacaaaggctg
agcttccagaacggccctgggccggctaggctgacagcggtggccattcg
acctccacctgcggcccgaggcccgctcgcacggaccctgccaggcgcag
aaggccgggtctgaagcccacacccacgcgcggccgtacccgcactgcag
cagacgcgccaccgcccgagctctacgcctctgccgctccgggcccgcgg
ggaccacacttaccggcggccgcggacctcggcggtgggcgtgggacgga
gcccgtcggctgcgggacaaggcggctctgcgcttcggcagagacctcga
aggcggaggtatcgctgcgcctccgcccagctgccgccactcccgggaac
tgggcggctgggggcggggccggaaggcgggacctcggggggcgggacct
ggaggcaggccctcggcgtggggcggggtccttagcggtgactgggaggg
gccattgtaggcggggtcatgacgttgcgcgtgaacgggggcggagcctt
aacggtatggcggcgcctctctcctcgtgggcgggactctaggcgtgtgg
gcggggcctttggtggcggggttggtttggcctctgcggcgtggggccgc
gccctggttcagtcacatagggcggagagcgaaagagtagacttgaaggc
gggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93538004_93539197
seq2: B6Ng01-222F19.b_44_1225

seq1  GAATTCACTGTGACGTTCCAAGCCTCTTAAGCCTTCATCCAGTCTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGACGTTCCAAGCCTCTTAAGCCTTCATCCAGTCTTCTAA  50

seq1  GCTATACTGCATACCTACCAACACCTCCCTCTATCAACTGCAGATCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTGCATACCTACCAACACCTCCCTCTATCAACTGCAGATCACCA  100

seq1  TCCAATCTAAATATCAGGGAGGCATCATCAAACTCACTAGAGCAGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTAAATATCAGGGAGGCATCATCAAACTCACTAGAGCAGGCTCC  150

seq1  AGGGGACTGTAACATTCTAACCCCCTCAGTGTCCACTCCCACATGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTGTAACATTCTAACCCCCTCAGTGTCCACTCCCACATGCTTTG  200

seq1  TGCTGATACGCATCCCCGTCCTCTGTCACAGTGTTTTCTCTTGAAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATACGCATCCCCGTCCTCTGTCACAGTGTTTTCTCTTGAAGCAGA  250

seq1  CACTTCTCCCAGAAGCTGTGCTCAGACCTGACTCTACTTATTATCAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCCAGAAGCTGTGCTCAGACCTGACTCTACTTATTATCAAGAA  300

seq1  AGTTAAGGAGGTAGACATGGTACAAAGGCGAGACGCCAGTGCCACCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGGAGGTAGACATGGTACAAAGGCGAGACGCCAGTGCCACCATGC  350

seq1  AGTGGTGGCAATAAGTCCTGTCAAGAGAAAGATGAAACCCAGGAAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCAATAAGTCCTGTCAAGAGAAAGATGAAACCCAGGAAGCCAT  400

seq1  ATGCAATCTCAGTCCTTCCTCAGCCTTTCCAGAGCCCTGCCCATGGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATCTCAGTCCTTCCTCAGCCTTTCCAGAGCCCTGCCCATGGATAT  450

seq1  GTTTAATAAGAAAGTTACACAATGTATATGTTTAATAAGAAAGTTACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAGAAAGTTACACAATGTATATGTTTAATAAGAAAGTTACACA  500

seq1  ATGTATATGTTTAATAAGAAAGTTACACAATGTAGGCCGGGCGTGGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATGTTTAATAAGAAAGTTACACAATGTAGGCCGGGCGTGGTGGT  550

seq1  GCATGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGA  600

seq1  GTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGATTG  650

seq1  CACAGAGAAACAAACACTGTCTAGGAGAAAGAAAGAAAGAAAGAAAGAAA  700
      |||||||||||||||||||||||||    |||||||||||||||||||||
seq2  CACAGAGAAACAAACACTGTCTAGG----AGAAAGAAAGAAAGAAAGAAA  696

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGA  746

seq1  GAGAAAGAAAGAAAGTTACACAATGTATATGTTTAATAAGAAAGTTACAC  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAAG-AAGTTACACAATGTATATGTTTAATAAGAAAGTTACAC  795

seq1  AGCAGCCAAAATGTTTACAAACC-CTTATTATAATAACTGAACCTGAGAT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCAGCCAAAATGTTTACAAACCTCTTATTATAATAACTGAACCTGAGAT  845

seq1  TAACATTAGAGTCTCAAAAGCTATACCTGTTGAACCAG-TAAAACTAATA  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAACATTAGAGTCTCAAAAGCTATACCTGTTGAACCAGTTAAAACTAATA  895

seq1  AAGGCAACCAGTTAAGTGGAATGGTAAATTCTATCCAACCAGGAGCCTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACCAGTTAAGTGGAATGGTAAATTCTATCCAACCAGGAGCCTTC  945

seq1  CTACAGCTCACCCTGCCAGTCCCTCCTCCTGAGTTGCTCTAATTAACCAG  998
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CTACAGCTCACCCTGCCAGTCCCTCTTCCTGAGTTGCTCTATTTAACCAG  995

seq1  CCGAATTGTATACATTCTG-CAC-TTTTATTTTTGCT-CAGTTTCTTATA  1045
      ||||||||||||||||||| ||| ||||||||||||| ||||||||||| 
seq2  CCGAATTGTATACATTCTGCCACTTTTTATTTTTGCTCCAGTTTCTTATT  1045

seq1  ACCTCCCTCTG-TTTGAG-AGACG-CACTTGGCTGTAGGGCAATGGTGTG  1092
      | ||||||||| |||||| ||||| ||||  |||||||||||||||||||
seq2  A-CTCCCTCTGTTTTGAGAAGACGCCACT--GCTGTAGGGCAATGGTGTG  1092

seq1  TGCTCAGGGCAGGAGTCGAG-ATGTCTAAAACTACAACTTGATAAAAATG  1141
      |||||| |||| |||||||| ||||||||| |||||   ||||  |||| 
seq2  TGCTCAAGGCAAGAGTCGAGAATGTCTAAACCTACA--CTGAT--AAATT  1138

seq1  GAGAGACCAGGAGGAAAGGCGGGAAGAGGTAAGAGAACCCCATGCGTAT-  1190
       |  ||||  || | |||   | |||     ||||||  |||||||||| 
seq2  CAAGGACC--GAAGCAAG--CGAAAG----TAGAGAA--CCATGCGTATC  1178

seq1  TCAC  1194
      ||||
seq2  TCAC  1182

seq1: chr16_93711873_93712776
seq2: B6Ng01-222F19.g_75_981 (reverse)

seq1  CCCT-CCGCCTCCAAGTCTCCTCTTTCGCTCTCCGCCCTATGTGACTG-A  48
      |||| |||||| ||||||| |||||||||||||||||||||||||||| |
seq2  CCCTCCCGCCTTCAAGTCTACTCTTTCGCTCTCCGCCCTATGTGACTGAA  50

seq1  CCAGGGCGCGGCCCCACGCCGCAGAGGCCAAACCAACCCCGCCACC-AAG  97
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAGGGCGCGGCCCCACGCCGCAGAGGCCAAACCAACCCCGCCACCAAAG  100

seq1  GCCCCGCCCACACGCCTAGAGTCCCGCCCACGAGGAGAGAGGCGCCGCCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGCCCACACGCCTAGAGTCCCGCCCACGAGGAGAGAGGCGCCGCCA  150

seq1  TACCGTTAAGGCTCCGCCCCCGTTCACGCGCAACGTCATGACCCCGCCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTTAAGGCTCCGCCCCCGTTCACGCGCAACGTCATGACCCCGCCTA  200

seq1  CAATGGCCCCTCCCAGTCACCGCTAAGGACCCCGCCCCACGCCGAGGGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCCCCTCCCAGTCACCGCTAAGGACCCCGCCCCACGCCGAGGGCC  250

seq1  TGCCTCCAGGTCCCGCCCCCCGAGGTCCCGCCTTCCGGCCCCGCCCCCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGGTCCCGCCCCCCGAGGTCCCGCCTTCCGGCCCCGCCCCCAG  300

seq1  CCGCCCAGTTCCCGGGAGTGGCGGCAGCTGGGCGGAGGCGCAGCGATACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCAGTTCCCGGGAGTGGCGGCAGCTGGGCGGAGGCGCAGCGATACC  350

seq1  TCCGCCTTCGAGGTCTCTGCCGAAGCGCAGAGCCGCCTTGTCCCGCAGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTTCGAGGTCTCTGCCGAAGCGCAGAGCCGCCTTGTCCCGCAGCC  400

seq1  GACGGGCTCCGTCCCACGCCCACCGCCGAGGTCCGCGGCCGCCGGTAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGCTCCGTCCCACGCCCACCGCCGAGGTCCGCGGCCGCCGGTAAGT  450

seq1  GTGGTCCCCGCGGGCCCGGAGCGGCAGAGGCGTAGAGCTCGGGCGGTGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCCGCGGGCCCGGAGCGGCAGAGGCGTAGAGCTCGGGCGGTGGC  500

seq1  GCGTCTGCTGCAGTGCGGGTACGGCCGCGCGTGGGTGTGGGCTTCAGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTGCTGCAGTGCGGGTACGGCCGCGCGTGGGTGTGGGCTTCAGACC  550

seq1  CGGCCTTCTGCGCCTGGCAGGGTCCGTGCGAGCGGGCCTCGGGCCGCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTTCTGCGCCTGGCAGGGTCCGTGCGAGCGGGCCTCGGGCCGCAGG  600

seq1  TGGAGGTCGAATGGCCACCGCTGTCAGCCTAGCCGGCCCAGGGCCGTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCGAATGGCCACCGCTGTCAGCCTAGCCGGCCCAGGGCCGTTCT  650

seq1  GGAAGCTCAGCCTTTGTTGGGCAGGGCTTCCAGGTTCCCTAATGGTGTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCAGCCTTTGTTGGGCAGGGCTTCCAGGTTCCCTAATGGTGTCC  700

seq1  CAGCAGCCGGCGTGCACCAGCCAGCCTGCCCCTGCGCCGGCGGATAAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCGGCGTGCACCAGCCAGCCTGCCCCTGCGCCGGCGGATAAGCC  750

seq1  GCGGAGGAGGTGCTCACCCGGTGACAGCAGTCCCCATCTCGGGAAGCCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGAGGTGCTCACCCGGTGACAGCAGTCCCCATCTCGGGAAGCCTG  800

seq1  TGTAGGGTTGTTGAGGACACCCCACCTTTAAAAGCTATTCCTGTGAAGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTTGTTGAGGACACCCCACCTTTAAAAGCTATTCCTGTGAAGTG  850

seq1  TCAGGTGTCTTGCTTTTTTTCCCCCCTCTAGTGCTATTTGATCTCAGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTCTTGCTTTTTTTCCCCCCTCTAGTGCTATTTGATCTCAGTGT  900

seq1  AAAAGAC  904
      |||||||
seq2  AAAAGAC  907