BAC Information

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BAC

Clone NameB6Ng01-222I22
Chromosome3 (Build37)16 (Build37)
Map Location 10,529,902 - 10,530,74650,710,673 - 50,711,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16
Downstream geneLOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222I22.bB6Ng01-222I22.g
ACCGA037542GA037543
length1,0131,076
definitionB6Ng01-222I22.b B6Ng01-222I22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,529,902 - 10,530,746)(50,710,673 - 50,711,737)
sequence
gaattcagggatcaaaaaggcatggaaaattttgaacgtcatgtcgagct
ggtatcggcttctggaacactgaaaggatctcccatctctgctccatcgt
ttgtgcttgtgggaccatccaccacatccacaggggcaactggatcagga
gcctcattcttccagtgtctcaccaacctctccggcacgcaaagaggttc
catctggtcctgtggaaacacacaaacagaccctcccgcccacatcaaca
ccggatctggtcgatccccaggggagatggacacaataccttgtggtgat
gagaccataacctcaatcacctgtgtgtccatctggggagtcaatacgag
agtcaagttttcactagcttcccctctgttaggcaatgatttccacgccc
ttatggcaatctgattcacctgcttaaacacctgcagtggatatcctgtt
tgttgttgtgcaaatcgaccttgaccaagcagcatatccctatcccggct
ggatttcctgcaacagcgttagcagttgcctgttcattcacaaattcaat
aagaaaggctttccaatctaaatactgcccaggtgaaaggcatgccttca
ccaagcctgcccaatcggacggcgtcatgcagtgtctattcaaggcctcc
acctgagccacagtataggaagcactcaggccgcatgttcgcacggactc
agccaaattcccgattactttgaaatctagaggctcatgatatctctgcc
ctgcttggtcagtgaaaataggacatcccagcaaggagaatctatcctct
ttccagacctccggacagaaagtccacctataggtggctgctgaggaggc
atatggaggaggcgcagaagctaattcgccttcctcctccgcctcggctc
ttttgtttcgtcctttctgtccacctgatacactgtgtctcctttctttt
tccttttctttttaagcccttctcctcttccacatactctctgtgctctg
taaggattttctg
gaattcaaggcaggaacctggaagcaaaaccatggaagaatgagaaatgt
tgctactgacttgttctccagactcacattcagctacatttggataactc
caaggaccaatgcccagaggtcacactgcccacagtgagctgggtgctac
catatcaattattaatctagaaaatgcctacatggagtttcctgtgggga
ggttggatggaggcacttgggatgaggtttccttatcccagataacccta
gttcctatcaaattgacaaaaacctaagcaacatgcttgacaaagttagg
gacctggtttttacattttcttaagtttcctgtctttataggagggggaa
cagttacaaaatttcctgcagctccatcactgtatctcttgtttgtgtct
ttttgtgtcagtgtagatttaatggccttaaccagacccacagaaataac
atcctgtctgtatgtccatacttaagtctttttctttctgtaatttcaaa
cacttccaggaagagttttagagtctgttcattcatccttacttggaggc
atgccctccaaatcacttgtattaacaagtcacctaacttctttttatta
tcttctttttaggtcagttatgggtaggttttttgtttgtttgtttgttt
tgctttttgtttcttttggattggtttggtttggtttggttttagtctcc
aaaaagccctgaataatgtcctaaggtccaaatgtttatgttgtcattta
aagatctctaaggtctggctgtaagtgtgtcagctacctttctcaacagc
catcacattttccttgtgcacagcactgtggacgtggatttactggcttt
taaaagcagtgttcaaaattccaagtggatatattgtgttgagttgctcc
ttgcacactcatgtgcttgaactgcatccctcctggaatcctcaatgttc
aagaattctgttgtttattgaagggccaaccaacacacctcttcctccat
atttttcccttctcttaatgaaaccacctttaggtctgaattatgttatc
aaccaatttatgctttctttttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_10529902_10530746
seq2: B6Ng01-222I22.b_47_890

seq1  GAATTCAGGGATCAAAAAGGCATGGAAAAATTTGAATGTCATGTCGAGCT  50
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  GAATTCAGGGATCAAAAAGGCATGGAAAATTTTGAACGTCATGTCGAGCT  50

seq1  GGTATTGGCTTCTGGAACACTGAAAGGATCTCCCATCTCGGCTCCATCGT  100
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTATCGGCTTCTGGAACACTGAAAGGATCTCCCATCTCTGCTCCATCGT  100

seq1  TTGTGCTTGTGGGACCATCCACCACATCCACAGGGGCAACTGGATCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGTGGGACCATCCACCACATCCACAGGGGCAACTGGATCAGGA  150

seq1  GGCTCATTCTTGCAGTGTCTCACCAATCTCTCCAGCACCCAAAGAGGTTC  200
      | ||||||||| |||||||||||||| |||||| |||| |||||||||||
seq2  GCCTCATTCTTCCAGTGTCTCACCAACCTCTCCGGCACGCAAAGAGGTTC  200

seq1  TGTCTGGTCCTGTGGAAACACACAAACAGACCCTCTGGCCCACGTCAACA  250
        |||||||||||||||||||||||||||||||||  |||||| ||||||
seq2  CATCTGGTCCTGTGGAAACACACAAACAGACCCTCCCGCCCACATCAACA  250

seq1  CCGGATCTGGTCGATCTCCAGGGGAGATGGACACAATACCTCGTGGTAAT  300
      |||||||||||||||| |||||||||||||||||||||||| ||||| ||
seq2  CCGGATCTGGTCGATCCCCAGGGGAGATGGACACAATACCTTGTGGTGAT  300

seq1  GAGACCATAACCTCAATCACCTGTGTGTCCATCTGGGGAGTCAATATGAG  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGACCATAACCTCAATCACCTGTGTGTCCATCTGGGGAGTCAATACGAG  350

seq1  AGTCAAGTTTTCACTAACTTCCCCTCTGTTGGGCAATGATTTCCACGCCC  400
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AGTCAAGTTTTCACTAGCTTCCCCTCTGTTAGGCAATGATTTCCACGCCC  400

seq1  TTATAGCAATCTGATTCACCTGCTCAAACACTTGCAGTGGATATCCTGTC  450
      |||| ||||||||||||||||||| |||||| ||||||||||||||||| 
seq2  TTATGGCAATCTGATTCACCTGCTTAAACACCTGCAGTGGATATCCTGTT  450

seq1  TGTTGTTGTGCAAATCGACCTTGACCAAGCAGCATATCCCTATCCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  TGTTGTTGTGCAAATCGACCTTGACCAAGCAGCATATCCCTATCCC-GGC  499

seq1  TGGATTTCCTGCAACAGCTTTAGCAGCTGCCTGCTCATTTGCAAATTCAA  550
      |||||||||||||||||| ||||||| |||||| |||||  |||||||||
seq2  TGGATTTCCTGCAACAGCGTTAGCAGTTGCCTGTTCATTCACAAATTCAA  549

seq1  TAAGGAAGGCTTTCCAATCTAAATACTGCCCAGGTGAAAGGCATGCCTTC  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGGCTTTCCAATCTAAATACTGCCCAGGTGAAAGGCATGCCTTC  599

seq1  ACCAAGCCTGCCCAATCTGACTGCGTCATACAGTGTCTATTCAAGGCCTC  650
      ||||||||||||||||| ||| ||||||| ||||||||||||||||||||
seq2  ACCAAGCCTGCCCAATCGGACGGCGTCATGCAGTGTCTATTCAAGGCCTC  649

seq1  TACTTGAGCCACAGTATAGGAAGCACTTAAGCTGTATGTCCGCACGGACT  700
       || ||||||||||||||||||||||| | || | |||| ||||||||||
seq2  CACCTGAGCCACAGTATAGGAAGCACTCAGGCCGCATGTTCGCACGGACT  699

seq1  CAGCCAAATTCCTAATTACTTTGAAATCTAGAGGCTCATGATATCTCAGC  750
      ||||||||||||  ||||||||||||||||||||||||||||||||| ||
seq2  CAGCCAAATTCCCGATTACTTTGAAATCTAGAGGCTCATGATATCTCTGC  749

seq1  CCTGCTTGGTCGGTGAAAATAGGACATCCCAGCAAGGAGAATCTATCCTC  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGGTCAGTGAAAATAGGACATCCCAGCAAGGAGAATCTATCCTC  799

seq1  TCTCCAAACCTCCGGACAGAAGGTCCACCTATAGGTGGCTGCTGA  845
      | |||| |||||||||||||| |||||||||||||||||||||||
seq2  TTTCCAGACCTCCGGACAGAAAGTCCACCTATAGGTGGCTGCTGA  844

seq1: chr16_50710673_50711737
seq2: B6Ng01-222I22.g_66_1141

seq1  GAATTCAAGGCAGGAACCTGGAAGCAAAACCATGGAAGAATGAGAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAGGAACCTGGAAGCAAAACCATGGAAGAATGAGAAATGT  50

seq1  TGCTACTGACTTGTTCTCCAGACTCACATTCAGCTACATTTGGATAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGACTTGTTCTCCAGACTCACATTCAGCTACATTTGGATAACTC  100

seq1  CAAGGACCAATGCCCAGAGGTCACACTGCCCACAGTGAGCTGGGTGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCAATGCCCAGAGGTCACACTGCCCACAGTGAGCTGGGTGCTAC  150

seq1  CATATCAATTATTAATCTAGAAAATGCCTACATGGAGTTTCCTGTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAATTATTAATCTAGAAAATGCCTACATGGAGTTTCCTGTGGGGA  200

seq1  GGTTGGATGGAGGCACTTGGGATGAGGTTTCCTTATCCCAGATAACCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGATGGAGGCACTTGGGATGAGGTTTCCTTATCCCAGATAACCCTA  250

seq1  GTTCCTATCAAATTGACAAAAACCTAAGCAACATGCTTGACAAAGTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATCAAATTGACAAAAACCTAAGCAACATGCTTGACAAAGTTAGG  300

seq1  GACCTGGTTTTTACATTTTCTTAAGTTTCCTGTCTTTATAGGAGGGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTTTTTACATTTTCTTAAGTTTCCTGTCTTTATAGGAGGGGGAA  350

seq1  CAGTTACAAAATTTCCTGCAGCTCCATCACTGTATCTCTTGTTTGTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACAAAATTTCCTGCAGCTCCATCACTGTATCTCTTGTTTGTGTCT  400

seq1  TTTTGTGTCAGTGTAGATTTAATGGCCTTAACCAGACCCACAGAAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTCAGTGTAGATTTAATGGCCTTAACCAGACCCACAGAAATAAC  450

seq1  ATCCTGTCTGTATGTCCATACTTAAGTCTTTTTCTTTCTGTAATTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTGTATGTCCATACTTAAGTCTTTTTCTTTCTGTAATTTCAAA  500

seq1  CACTTCCAGGAAGAGTTTTAGAGTCTGTTCATTCATCCTTACTTGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAGGAAGAGTTTTAGAGTCTGTTCATTCATCCTTACTTGGAGGC  550

seq1  ATGCCCTCCAAATCACTTGTATTAACAAGTCACCTAACTTCTTTTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCCAAATCACTTGTATTAACAAGTCACCTAACTTCTTTTTATTA  600

seq1  TCTTCTTTTTAGGTCAGTTATGGGTAGGTTTTTTGTTTGTTTGTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTTAGGTCAGTTATGGGTAGGTTTTTTGTTTGTTTGTTTGTTT  650

seq1  TGCTTTTTGTTTCTTTTGGATTGGTTTGGTTTGGTTTGGTTTTAGTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGTTTCTTTTGGATTGGTTTGGTTTGGTTTGGTTTTAGTCTCC  700

seq1  AAAAAGCCCTGAATAATGTCCTAAGGTCCAAATGTTTATGTTGTCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCCTGAATAATGTCCTAAGGTCCAAATGTTTATGTTGTCATTTA  750

seq1  AAGATCTCTAAGGTCTGGCTGTAAGTGTGTCAGCTACCTTTCTCCACAGC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGATCTCTAAGGTCTGGCTGTAAGTGTGTCAGCTACCTTTCTCAACAGC  800

seq1  CATCACATTT--CTTGTGCACAGCACTGTGGACGTGGATTTACTGGCTTT  848
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CATCACATTTTCCTTGTGCACAGCACTGTGGACGTGGATTTACTGGCTTT  850

seq1  --AAAGCAGTG-TCAAAATTCCAAGGTGGATA-AATGTG-TGAG-TGCTC  892
        ||||||||| |||||||||||| ||||||| | |||| |||| |||||
seq2  TAAAAGCAGTGTTCAAAATTCCAA-GTGGATATATTGTGTTGAGTTGCTC  899

seq1  CTTGCACACCCATGTGCTTG-ACTGCAT-CCTCCTGG-ATCTCTAATGTC  939
      ||||||||| |||||||||| ||||||| |||||||| |||   ||||| 
seq2  CTTGCACACTCATGTGCTTGAACTGCATCCCTCCTGGAATCCTCAATGTT  949

seq1  CA--GATTCTG-TGTTTATTTGAGGGCCAAACCAAACACCACCTCTTCCT  986
      ||   |||||| ||||||||  ||||||||  | |||| |||||||||||
seq2  CAAGAATTCTGTTGTTTATTGAAGGGCCAA--CCAACA-CACCTCTTCCT  996

seq1  CCACATTTTTTCCTTCTCTTTTACAGAAGCAACC-TTAGGTCTGAATTAG  1035
      ||| |||||| |||||||  |||  ||| | ||| |||||||||||||| 
seq2  CCATATTTTTCCCTTCTC--TTAATGAAACCACCTTTAGGTCTGAATTA-  1043

seq1  TGTAAT-ATACTATTTATGCTT--CTTTTGCAA  1065
      ||| || |  | ||||||||||   ||||||||
seq2  TGTTATCAACCAATTTATGCTTTCTTTTTGCAA  1076