BAC Information

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BAC

Clone NameB6Ng01-224B06
Chromosome16 (Build37)
Map Location 59,457,600 - 59,458,639
singlet/doubletsinglet
Overlap geneGabrr3, LOC100043803
Upstream geneDcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207
Downstream geneMina, BC043118, LOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224B06.bB6Ng01-224B06.g
ACCGA038641GA038642
length1,2171,052
definitionB6Ng01-224B06.b B6Ng01-224B06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgaaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggatatagtactactggaggatcctgaaatacctcttctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
attcacagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacggaaaatgtggtacatttacaaaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcaccatcctgagtgaggtaacacaatcacaaa
ggaactcacacaacatgtactcactgataagtggatattagcccagaaac
ctaggatacccaagatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagaccaaagtgtggacactgtgcccattcttagaaatggga
aaaaacacccatggaaggagttacagagacaaagtttgaagctgtgagga
aaggatggaccatctagagactgccatatccagggatacaccccataatc
agcttccaaatgctgacaccactgcatacactagcaagattgtgctgaaa
ggacacagatatagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgtaaacct
ataggtggaaaacaatatgaactaacaagtaccccggagctctgactcta
gctgcatatgtattaaaaagaatggctagtcggcatcactggaaagaaga
agtccaatgacacaccaactttatatgcccagtacaggcattgccaggcc
aaaaacgggaatgatgttaggcaagttggggtggggaatactgtttactg
tgattgcgcgctactga
gaattcaccaccctgccctgccaatcacaaggtccagacgtctgagatct
acagtgctctctgatatgattggaccaggaagtccccagggccacgtggt
cgagtttcttcctccggcctccatgatgaaacggacgctttctcactcct
tttagacccttattcatgcggggacaggagtatgggattattggagcagc
atccaggcagtctgtttagccatccccacactgtggctcttgggatgtgt
ggtggatctcatgcagcccgggtttgtctggcggcccccttggctactct
gaccagctgtgtggtggcctgagggttgccctcccgtgcaggttggtagc
aaatcgcaacggcctccctcacaccacctgcaggctccgctcgtgcccat
ccagctgcaccttgagcttgtgcagctcttcgatctcacggttgtggcgc
tccgtcttgtgccgcaccagggaacggtagaagtggatggtgaagaccac
gaagatgagacccacaggtaccatgatgatggtggacaccagagcggcct
gccagcccgtgtggctgtgggagcctggctgatccttggcatccactggg
aggaacttgatccagcagagcaggaccacctcagccaggaaaagcaggat
gcccagaacggtggagaagccccaggccagctcgatgtacgggtgcatgc
gctcgtgcggcgactcgctgatggagttgaggtagtggatgttgctcacg
gcttccacgttgggcaggatgcaagtgctgatgagcagagcaaacagatg
cacggctaccagcaccgtgggtgcaggcgctgaaggcaatgagcaggggc
atgagggtactggtacttggttctccagctgcaccctccaccatggccac
aatgggcgaagcctagacaggagggcccgaggtccggctggaaggctttt
cagctttgcccctgcctcaggtagagctttcttccagacagtgcctgcac
cgaatgggtgttagacgtgacgaggttccaggtagctgcgccggacccag
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_59457600_59458639
seq2: B6Ng01-224B06.g_68_1119 (reverse)

seq1  GACTGGGTCCGGCGCAGCTACCTGGAA-CTCGTCACGTCTAACCACCATT  49
      ||||||||||||||||||||||||||| |||||||||||||||  |||||
seq2  GACTGGGTCCGGCGCAGCTACCTGGAACCTCGTCACGTCTAACACCCATT  50

seq1  CGGTGCAGGCACTGTCCTGGAGGAAGCTCTACCTGA-GCA-GGGCCAAGC  97
      ||||||||||||||||  | || ||||||||||||| ||| |||| ||||
seq2  CGGTGCAGGCACTGTCTGGAAGAAAGCTCTACCTGAGGCAGGGGCAAAGC  100

seq1  TG-AAAGCC-TCCAGCCGGACCTC-GGCCCTCCTGTCT-GGCTTCG-CCA  142
      || |||||| |||||||||||||| ||||||||||||| ||||||| |||
seq2  TGAAAAGCCTTCCAGCCGGACCTCGGGCCCTCCTGTCTAGGCTTCGCCCA  150

seq1  TGGTGGCCATGGTGGA-GGTGCAGCTGGAG-ACCAAGTACCAGTACCCTC  190
      | |||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TTGTGGCCATGGTGGAGGGTGCAGCTGGAGAACCAAGTACCAGTACCCTC  200

seq1  A-GCCCCTGCTCATTGCCTTCAGCGCCTGCA-CCACGGTGCTGGTAGCCG  238
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCCCCTGCTCATTGCCTTCAGCGCCTGCACCCACGGTGCTGGTAGCCG  250

seq1  TGCATCTGTTTGCTCTGCTCATCAGCACTTGCATCCTGCCCAACGTGGAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTTTGCTCTGCTCATCAGCACTTGCATCCTGCCCAACGTGGAA  300

seq1  GCCGTGAGCAACATCCACTACCTCAACTCCATCAGCGAGTCGCCGCACGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGAGCAACATCCACTACCTCAACTCCATCAGCGAGTCGCCGCACGA  350

seq1  GCGCATGCACCCGTACATCGAGCTGGCCTGGGGCTTCTCCACCGTTCTGG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGCACCCGTACATCGAGCTGGCCTGGGGCTTCTCCACCGTTCTGG  400

seq1  GCATCCTGCTTTTCCTGGCTGAGGTGGTCCTGCTCTGCTGGATCAAGTTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGCTTTTCCTGGCTGAGGTGGTCCTGCTCTGCTGGATCAAGTTC  450

seq1  CTCCCAGTGGATGCCAAGGATCAGCCAGGCTCCCACAGCCACACGGGCTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTGGATGCCAAGGATCAGCCAGGCTCCCACAGCCACACGGGCTG  500

seq1  GCAGGCCGCTCTGGTGTCCACCATCATCATGGTACCTGTGGGTCTCATCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCGCTCTGGTGTCCACCATCATCATGGTACCTGTGGGTCTCATCT  550

seq1  TCGTGGTCTTCACCATCCACTTCTACCGTTCCCTGGTGCGGCACAAGACG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTCTTCACCATCCACTTCTACCGTTCCCTGGTGCGGCACAAGACG  600

seq1  GAGCGCCACAACCGTGAGATCGAAGAGCTGCACAAGCTCAAGGTGCAGCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCCACAACCGTGAGATCGAAGAGCTGCACAAGCTCAAGGTGCAGCT  650

seq1  GGATGGGCACGAGCGGAGCCTGCAGGTGGTGTGAGGGAGGCCGTTGCGAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGCACGAGCGGAGCCTGCAGGTGGTGTGAGGGAGGCCGTTGCGAT  700

seq1  TTGCTACCAACCTGCACGGGAGGGCAACCCTCAGGCCACCACACAGCTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACCAACCTGCACGGGAGGGCAACCCTCAGGCCACCACACAGCTGG  750

seq1  TCAGAGTAGCCAAGGGGGCCGCCAGACAAACCCGGGCTGCATGAGATCCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAGCCAAGGGGGCCGCCAGACAAACCCGGGCTGCATGAGATCCA  800

seq1  CCACACATCCCAAGAGCCACAGTGTGGGGATGGCTAAACAGACTGCCTGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATCCCAAGAGCCACAGTGTGGGGATGGCTAAACAGACTGCCTGG  850

seq1  ATGCTGCTCCAATAATCCCATACTCCTGTCCCCGCATGAATAAGGGTCTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTCCAATAATCCCATACTCCTGTCCCCGCATGAATAAGGGTCTA  900

seq1  AAAGGAGTGAGAAAGCGTCCGTTTCATCATGGAGGCCGGAGGAAGAAACT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTGAGAAAGCGTCCGTTTCATCATGGAGGCCGGAGGAAGAAACT  950

seq1  CGACCACGTGGCCCTGGGGACTTCCTGGTCCAATCATATCAGAGAGCACT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCACGTGGCCCTGGGGACTTCCTGGTCCAATCATATCAGAGAGCACT  1000

seq1  GTAGATCTCAGACGTCTGGACCTTGTGATTGGCAGGGCAGGGTGGTGAAT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTCAGACGTCTGGACCTTGTGATTGGCAGGGCAGGGTGGTGAAT  1050

seq1  TC  1040
      ||
seq2  TC  1052