BAC Information

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BAC

Clone NameB6Ng01-224M16
Chromosome16 (Build37)19 (Build37)
Map Location 55,567,153 - 55,568,27318,009,971 - 18,010,060
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043449, LOC667927, LOC436421, Zpld1
Downstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224M16.bB6Ng01-224M16.g
ACCGA039153GA039154
length1,132590
definitionB6Ng01-224M16.b B6Ng01-224M16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,567,153 - 55,568,273)(18,009,971 - 18,010,060)
sequence
gaattcaatgttttctttttgctcattttctacttccatacttctagttt
aagcaaacaatatttaacatcttactcacaccagaagacctatgatattg
gctggtcagtgggtggggtagggcagctgatttagatacttttaaatgat
agttatgatatttggacattatgatagctaagtctagatgtcaattaatc
actattgagggatgctcaggaagatggctggtagaacattatttctacat
ggatttctcctgagaagattagtctataggccagtggattaaatggggga
agacccactctaaacttggtggggtctgttgaatctgctgggggccaggt
gaaatgagacagattcattctcatccattatagtgggttgcccttcttct
cctggccatggatatgcagattttagggctttgcccttggatcctgagac
ttgatagaggagcctcttgggggctctcagtgctgtgggctctgagaatt
aaatcattggtttttctagttttcagacttgggtggaaccatgctattga
attttctggttcaatatcatgcagatgacctatggtaggacaacagggca
tccataatgtgagccaaatatccccaaagtaaatctgtactgccccctct
ctgtttctgtctctgtccctgtctgtctctgtctctgtctctgtctctgt
ctctgtctctctctctctctctcatctatatcccattatttcatttgttt
ttgtctatctggagaactcttactaatgcagtgtttatgactgccagaag
tcttgccccacttcagggagggataacattttttcacattctttagaaga
aagcttacaaacctttgagggatgaatttctctgtcaactttgggaaggc
acttacaatgtttttgcaatactgagaagacatttaaatttaatataatt
ctttctggggtgatatatgaacatgctcgagcaccaggagttccgaatag
tcctttcagggtagttctcatactggatcctcacatctctgtgtagcaga
atctatattgcatctatttgcctagctttgcaattaatgtaacaggttat
ttgatggcaaagtgtcagtccatataccaata
gaattcacacctgatcttttataaagtcataaatacacactagaagatag
gatttttaagaaatggtgttggaaagtggggagcagagattgaaggaaaa
gccatccagagactgccccacctggggatccaatcccatatataccaaac
ctggctgctattgggcatgcctggaagtgcttgctaactggagcctgata
tggctgtctcctgaaaggctctgccagaacccaacaaaaacagaggcaga
tgctcacagccaaccattggtctaagagctgggtcccctatggaggagtt
gaagaagggactgaaggagctgaggggatttgcagccccatgagggagca
acagtgtcaaccagccaaacccccttggagctcttggggactggaccact
aaccaaatagtacacatggagggacccatggctccagccgcatatgtggc
agaggatggccttgttggacataagtggaaggaacagcccttggtcctaa
ggaagttcgatgccccagtgtaggggaatgccagagctggaaggcaggag
tgggtagatgggtggaggagcaccctcatagaggcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55567153_55568273
seq2: B6Ng01-224M16.b_50_1181 (reverse)

seq1  TATTGTTATATGACTTGACACTTTTCCCATC-AATAACCTGTTACATTAT  49
      ||||| ||||||   |||||| ||| ||||| ||||||||||||||||| 
seq2  TATTGGTATATGGACTGACAC-TTTGCCATCAAATAACCTGTTACATTAA  49

seq1  TTGCCAAGCTAGGCCAATAGATGC-ATATAGATTTCTGCTACCACAGAGA  98
      |||| ||||||||| ||||||||| ||||||| |||||||| ||||||||
seq2  TTGCAAAGCTAGGCAAATAGATGCAATATAGA-TTCTGCTA-CACAGAGA  97

seq1  TGTGAGAATCCAGTATGAGAACTACCCTGAAAGGACTATTC-GAACTCCT  147
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGAGGATCCAGTATGAGAACTACCCTGAAAGGACTATTCGGAACTCCT  147

seq1  -GTGCTCGAGCATGTTCATATATCACCCCAG-AAGAATTATATTAA--TT  193
       |||||||||||||||||||||||||||||| ||||||||||||||  ||
seq2  GGTGCTCGAGCATGTTCATATATCACCCCAGAAAGAATTATATTAAATTT  197

seq1  TAATGTCTTCTCAGTATTGCAAAAACATTGTAAGTGCCTT-CCAAAGTTG  242
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATGTCTTCTCAGTATTGCAAAAACATTGTAAGTGCCTTCCCAAAGTTG  247

seq1  ACAGAG-AATTCATCCCTC-AAGGTTTGTAAGCTTTCTTCT-AAGAATGT  289
      |||||| |||||||||||| ||||||||||||||||||||| ||||||||
seq2  ACAGAGAAATTCATCCCTCAAAGGTTTGTAAGCTTTCTTCTAAAGAATGT  297

seq1  G-AAAAATGTTATCCCTCCCTGAAGTGGGGCAAGACTTCTGGCAGTCAT-  337
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAAAAATGTTATCCCTCCCTGAAGTGGGGCAAGACTTCTGGCAGTCATA  347

seq1  AACACTGCATTAGTAAGAGTTCTCCAGATAGACAAAAAC-AATGAAATAA  386
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACACTGCATTAGTAAGAGTTCTCCAGATAGACAAAAACAAATGAAATAA  397

seq1  TGGGATATAGATGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATAGATGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACA  447

seq1  GAGACAGAGACAGACAGGGACAGAGACAGAAACAGAGAGGGGGCAGTACA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAGACAGGGACAGAGACAGAAACAGAGAGGGGGCAGTACA  497

seq1  GATTTACTTTGGGGATATTTGGCTCACATTATGGATGCCCTGTTGTCCTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTTTGGGGATATTTGGCTCACATTATGGATGCCCTGTTGTCCTA  547

seq1  CCATAGGTCATCTGCATGATATTGAACCAGAAAATTCAATAGCATGGTTC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTCATCTGCATGATATTGAACCAGAAAATTCAATAGCATGGTTC  597

seq1  CACCCAAGTCTGAAAACTAGAAAAACCAATGATTTAATTCTCAGAGCCCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGTCTGAAAACTAGAAAAACCAATGATTTAATTCTCAGAGCCCA  647

seq1  CAGCACTGAGAGCCCCCAAGAGGCTCCTCTATCAAGTCTCAGGATCCAAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGAGAGCCCCCAAGAGGCTCCTCTATCAAGTCTCAGGATCCAAG  697

seq1  GGCAAAGCCCTAAAATCTGCATATCCATGGCCAGGAGAAGAAGGGCAACC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCCCTAAAATCTGCATATCCATGGCCAGGAGAAGAAGGGCAACC  747

seq1  CACTATAATGGATGAGAATGAATCTGTCTCATTTCACCTGGCCCCCAGCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAATGGATGAGAATGAATCTGTCTCATTTCACCTGGCCCCCAGCA  797

seq1  GATTCAACAGACCCCACCAAGTTTAGAGTGGGTCTTCCCCCATTTAATCC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAACAGACCCCACCAAGTTTAGAGTGGGTCTTCCCCCATTTAATCC  847

seq1  ACTGGCCTATAGACTAATCTTCTCAGGAGAAATCCATGTAGAAATAATGT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTATAGACTAATCTTCTCAGGAGAAATCCATGTAGAAATAATGT  897

seq1  TCTACCAGCCATCTTCCTGAGCATCCCTCAATAGTGATTAATTGACATCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGCCATCTTCCTGAGCATCCCTCAATAGTGATTAATTGACATCT  947

seq1  AGACTTAGCTATCATAATGTCCAAATATCATAACTATCATTTAAAAGTAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGCTATCATAATGTCCAAATATCATAACTATCATTTAAAAGTAT  997

seq1  CTAAATCAGCTGCCCTACCCCACCCACTGACCAGCCAATATCATAGGTCT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGCTGCCCTACCCCACCCACTGACCAGCCAATATCATAGGTCT  1047

seq1  TCTGGTGTGAGTAAGATGTTAAATATTGTTTGCTTAAACTAGAAGTATGG  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTGAGTAAGATGTTAAATATTGTTTGCTTAAACTAGAAGTATGG  1097

seq1  AAGTAGAAAATGAGCAAAAAGAAAACATTGAATTC  1121
      |||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAATGAGCAAAAAGAAAACATTGAATTC  1132

seq1: chr19_18009971_18010060
seq2: B6Ng01-224M16.g_581_662 (reverse)

seq1  CCCCTGCCTCTATGAGGGTGCTTCCCCACCCACCCACCTACCCACCCACT  50
      |||||||||||||||||||||| | ||||||        | | |||||||
seq2  CCCCTGCCTCTATGAGGGTGCTCCTCCACCC--------ATCTACCCACT  42

seq1  CCTGTCTTCCTGCCCTGGCATTTCCCTACACTGGGGCATC  90
      |||| ||||| || |||||||| |||||||||||||||||
seq2  CCTGCCTTCCAGCTCTGGCATTCCCCTACACTGGGGCATC  82