BAC Information

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BAC

Clone NameB6Ng01-225C03
Chromosome16 (Build37)
Map Location 38,107,003 - 38,208,140
singlet/doubletdoublet
Overlap geneGsk3b
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713
Downstream geneNr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C03.bB6Ng01-225C03.g
ACCGA039403GA039404
length1,1421,059
definitionB6Ng01-225C03.b B6Ng01-225C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,206,999 - 38,208,140)(38,107,003 - 38,108,058)
sequence
gaattctgtataatttgggttcatttctctaatttgctcccttgttggtg
ttcctaggacctatacagagaaaaaaaaatattgtcatctttctatctac
ccatatattgatgcattggttttgctaattaatgaattccaagcagaaat
aaacaactcaatggattttgtgaaagctttttagtttgtatttataaaac
catgctataccatcacagactaatgctctatgataagaatgttaaaaaaa
tctgagtcataaaaacattactagggcaagattccagggactgacatact
agttaagaacataaccatgtgtaaccctagtcccaggagatccaacaata
tcaactggcctgtgagggcaccaagtgctcccatactacacacacatttt
ttaaaaatccatacttataaaataaataaataaattaattaattaattta
gaaaattcaagtaatcctctggcttcctttcccactatatccaaactctg
atcttagctactctatataggaaaagtgacactcaagttagccaggccta
acaatgctgtagtcagccgtttgttggcaaatttcaccatttcacacaat
cactgaatatttagagtatcatatacaaaagaaactacctgaagacctag
agaagacataaagaacaagagaactcatatagctgcttattaaaacataa
gcaaacaataaaggcaaaataaattgagcacttcaatgcctctagagctg
tagtaggtactgaatacaaggacggctgcagaagacaggtctaaaggaga
agcattatgtacacacacagacacacacacacatgggatttcacacattt
ttcttcattaccttagagcctaatatgaaataggcttgtttagtgagaca
gtgttgccacagatagccctggctagcctacaattcagagatcctcccaa
ctgctgagtactgcacttaaagtcatgtatcactactaccagctgaaaca
aatctgttgaaataaaaatatacactatttacaaattagtgatagtttca
ccagggggagtgataataatattaatatttaatttgtgctagcacaacaa
ataatcagggtgtagttctacaaacattcgaattaatagatt
gaattcagcttcccatagaataattttcttcgggcttttttgttaacttg
atacttgtaaatagacactgaatattccccacttaaataagactgtagat
gagaatatttttatgaaccagtatgccttcatcaccagtttctgaaattt
gttacatatgcttaagacaatgaacagatacaatggcagcaccataattc
taccttttcactattaagaaggaagttctttaatcttcaagagtcaagag
gtgccatgatgaccttgtggacctacgtgagcgtgtgagggaattggttc
cttcccagcttgtcggtccctgggattgagctcagcttgtctggcttgga
gggaagcaacttttcctactgagccactctgctccttcctttggcctgcc
ttagtgttgcctgcctttagtccctacactcagaggcagaggcagaggca
gagaggggctgagagagagagaggcaggcagaggcaggagaatctcaaga
gttcattagtggttgtaccgttctgctcaccacagattcttgtacgaacc
tgctaatcttatgagtttccttgttcttgatgttttatataaaggtaatt
gtacactgtgtgactatggggccttttgtgtttggcctctttcactcagt
atatttttagggttcatttttgtttgtaccatgtttcattttaatggcta
gatactgtgtgccgtgtgtgccgtttgtgtgtctttccatatcccttatt
ttatttattcagttatttcttttttttgggggggggtctgaatattctgt
atagagttcctctgaacctatgtatgtgtagaagattttggttgagcgac
agatattttctttaggatatattccctagtaatattgcttggctatgtgg
gcattttcagtatttaatacaccacgggatagtcaatatgtttttcatag
gatttgtaccatttgacattaccacagcattgggttccagtttttctcat
tctctaatacttattttctaataagatttaatttgctttttgttttatgt
gtatgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_38206999_38208140
seq2: B6Ng01-225C03.b_44_1185 (reverse)

seq1  AATCTATTTATTCTGAATGTTTGTAGAACTACA-CCTGATTATTTGTTGG  49
      |||||||| |||| ||||||||||||||||||| ||||||||||||||| 
seq2  AATCTATTAATTC-GAATGTTTGTAGAACTACACCCTGATTATTTGTTG-  48

seq1  TTGCTAGCACAAATTAAATATTTAATATTA-TATCACTCCCC--TGTGAA  96
       ||||||||||||||||||| ||||||||| |||||||||||   |||||
seq2  -TGCTAGCACAAATTAAATA-TTAATATTATTATCACTCCCCCTGGTGAA  96

seq1  ACTATCACTAATTTGTAAATAGTGTAATATTTTATTTCAACAGATTTGTT  146
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  ACTATCACTAATTTGTAAATAGTGTATATTTTTATTTCAACAGATTTGTT  146

seq1  TCAGCTGGTAGTAGTGATACATGACTTTAAGTGCAGTACTCAGCAGTTGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGTAGTAGTGATACATGACTTTAAGTGCAGTACTCAGCAGTTGG  196

seq1  GAGGATCTCTGAATTGTAGGCTAGCCAGGGCTATCTGTGGCAACACTGTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTCTGAATTGTAGGCTAGCCAGGGCTATCTGTGGCAACACTGTC  246

seq1  TCACTAAACAAGCCTATTTCATATTAGGCTCTAAGGTAATGAAGAAAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAACAAGCCTATTTCATATTAGGCTCTAAGGTAATGAAGAAAAAT  296

seq1  GTGTGAAATCCCATGTGTGTGTGTGTCTGTGTGTGTACATAATGCTTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAATCCCATGTGTGTGTGTGTCTGTGTGTGTACATAATGCTTCTC  346

seq1  CTTTAGACCTGTCTTCTGCAGCCGTCCTTGTATTCAGTACCTACTACAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACCTGTCTTCTGCAGCCGTCCTTGTATTCAGTACCTACTACAGC  396

seq1  TCTAGAGGCATTGAAGTGCTCAATTTATTTTGCCTTTATTGTTTGCTTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGCATTGAAGTGCTCAATTTATTTTGCCTTTATTGTTTGCTTAT  446

seq1  GTTTTAATAAGCAGCTATATGAGTTCTCTTGTTCTTTATGTCTTCTCTAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATAAGCAGCTATATGAGTTCTCTTGTTCTTTATGTCTTCTCTAG  496

seq1  GTCTTCAGGTAGTTTCTTTTGTATATGATACTCTAAATATTCAGTGATTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGGTAGTTTCTTTTGTATATGATACTCTAAATATTCAGTGATTG  546

seq1  TGTGAAATGGTGAAATTTGCCAACAAACGGCTGACTACAGCATTGTTAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGGTGAAATTTGCCAACAAACGGCTGACTACAGCATTGTTAGG  596

seq1  CCTGGCTAACTTGAGTGTCACTTTTCCTATATAGAGTAGCTAAGATCAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTAACTTGAGTGTCACTTTTCCTATATAGAGTAGCTAAGATCAGA  646

seq1  GTTTGGATATAGTGGGAAAGGAAGCCAGAGGATTACTTGAATTTTCTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATATAGTGGGAAAGGAAGCCAGAGGATTACTTGAATTTTCTAAA  696

seq1  TTAATTAATTAATTTATTTATTTATTTTATAAGTATGGATTTTTAAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATTAATTTATTTATTTATTTTATAAGTATGGATTTTTAAAAAA  746

seq1  TGTGTGTGTAGTATGGGAGCACTTGGTGCCCTCACAGGCCAGTTGATATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAGTATGGGAGCACTTGGTGCCCTCACAGGCCAGTTGATATT  796

seq1  GTTGGATCTCCTGGGACTAGGGTTACACATGGTTATGTTCTTAACTAGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCTCCTGGGACTAGGGTTACACATGGTTATGTTCTTAACTAGTA  846

seq1  TGTCAGTCCCTGGAATCTTGCCCTAGTAATGTTTTTATGACTCAGATTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCCCTGGAATCTTGCCCTAGTAATGTTTTTATGACTCAGATTTT  896

seq1  TTTAACATTCTTATCATAGAGCATTAGTCTGTGATGGTATAGCATGGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATTCTTATCATAGAGCATTAGTCTGTGATGGTATAGCATGGTTT  946

seq1  TATAAATACAAACTAAAAAGCTTTCACAAAATCCATTGAGTTGTTTATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACAAACTAAAAAGCTTTCACAAAATCCATTGAGTTGTTTATTT  996

seq1  CTGCTTGGAATTCATTAATTAGCAAAACCAATGCATCAATATATGGGTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGAATTCATTAATTAGCAAAACCAATGCATCAATATATGGGTAG  1046

seq1  ATAGAAAGATGACAATATTTTTTTTTCTCTGTATAGGTCCTAGGAACACC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGATGACAATATTTTTTTTTCTCTGTATAGGTCCTAGGAACACC  1096

seq1  AACAAGGGAGCAAATTAGAGAAATGAACCCAAATTATACAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGAGCAAATTAGAGAAATGAACCCAAATTATACAGAATTC  1142

seq1: chr16_38107003_38108058
seq2: B6Ng01-225C03.g_66_1124

seq1  GAATTCAGCTTCCCATAGAATAATTTTCTTCGGGCTTTTTTGTTAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCCCATAGAATAATTTTCTTCGGGCTTTTTTGTTAACTTG  50

seq1  ATACTTGTAAATAGACACTGAATATTCCCCACTTAAATAAGACTGTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTAAATAGACACTGAATATTCCCCACTTAAATAAGACTGTAGAT  100

seq1  GAGAATATTTTTATGAACCAGTATGCCTTCATCACCAGTTTCTGAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTTTTATGAACCAGTATGCCTTCATCACCAGTTTCTGAAATTT  150

seq1  GTTACATATGCTTAAGACAATGAACAGATACAATGGCAGCACCATAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATATGCTTAAGACAATGAACAGATACAATGGCAGCACCATAATTC  200

seq1  TACCTTTTCACTATTAAGAAGGAAGTTCTTTAATCTTCAAGAGTCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTCACTATTAAGAAGGAAGTTCTTTAATCTTCAAGAGTCAAGAG  250

seq1  GTGCCATGATGACCTTGTGGACCTACGTGAGCGTGTGAGGGAATTGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATGATGACCTTGTGGACCTACGTGAGCGTGTGAGGGAATTGGTTC  300

seq1  CTTCCCAGCTTGTCGGTCCCTGGGATTGAGCTCAGCTTGTCTGGCTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGCTTGTCGGTCCCTGGGATTGAGCTCAGCTTGTCTGGCTTGGA  350

seq1  GGGAAGCAACTTTTCCTACTGAGCCACTCTGCTCCTTCCTTTGGCCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAACTTTTCCTACTGAGCCACTCTGCTCCTTCCTTTGGCCTGCC  400

seq1  TTAGTGTTGCCTGCCTTTAGTCCCTACACTCAGAGGCAGAGGCAGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTGCCTGCCTTTAGTCCCTACACTCAGAGGCAGAGGCAGAGGCA  450

seq1  GAGAGGGGCTGAGAGAGAGAGAGGCAGGCAGAGGCAGGAGAATCTCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCTGAGAGAGAGAGAGGCAGGCAGAGGCAGGAGAATCTCAAGA  500

seq1  GTTCATTAGTGGTTGTACCGTTCTGCTCACCACAGATTCTTGTACGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGTGGTTGTACCGTTCTGCTCACCACAGATTCTTGTACGAACC  550

seq1  TGCTAATCTTATGAGTTTCCTTGTTCTTGATGTTTTATATAAAGGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATCTTATGAGTTTCCTTGTTCTTGATGTTTTATATAAAGGTAATT  600

seq1  GTACACTGTGTGACTATGGGGCCTTTTGTGTTTGGCCTCTTTCACTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTGTGACTATGGGGCCTTTTGTGTTTGGCCTCTTTCACTCAGT  650

seq1  ATATTTTTAGGGTTCATTTTTGTTTGTACCATGTTTCATTTTAATGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAGGGTTCATTTTTGTTTGTACCATGTTTCATTTTAATGGCTA  700

seq1  GATACTGTGTGCCGTGTGTGCCGTTTGTGTGTCTTTCCATATCCCTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTGTGCCGTGTGTGCCGTTTGTGTGTCTTTCCATATCCCTTATT  750

seq1  TTATTTATTCAGTTATTTCTTTTTTTTGGGGGGGGGTCTGAATATTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCAGTTATTTCTTTTTTTTGGGGGGGGGTCTGAATATTCTGT  800

seq1  ATAGAGTTCCTCTGAACCTATGTATGTGTAGAAGATTTTGGTTGAGCGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTCCTCTGAACCTATGTATGTGTAGAAGATTTTGGTTGAGCGAC  850

seq1  AGATA-TTTCTTTAGGATATATT-CCTAGTAATATTGCTTGGCTATGT-G  897
      ||||| ||||||||||||||||| |||||||||||||||||||||||| |
seq2  AGATATTTTCTTTAGGATATATTCCCTAGTAATATTGCTTGGCTATGTGG  900

seq1  GCA-TTTCAGTATTTAATACACCACGGGATAGTCAATATGTTTTTCATAG  946
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAGTATTTAATACACCACGGGATAGTCAATATGTTTTTCATAG  950

seq1  GATTTGTACCATTTGACATTACCACCAGCAATTGGGTTCCAGTTTTTCTC  996
      |||||||||||||||||||||||| |||| ||||||||||||||||||| 
seq2  GATTTGTACCATTTGACATTACCA-CAGC-ATTGGGTTCCAGTTTTTCT-  997

seq1  CATCCTCTAATACTTATTTTCTATTAAGATTTATTTTCCTTTT--GTTTA  1044
      ||| ||||||||||||||||||| ||||||||| ||| |||||   ||||
seq2  CATTCTCTAATACTTATTTTCTAATAAGATTTAATTTGCTTTTTGTTTTA  1047

seq1  TGTGTATGAGTA  1056
      ||||||||||||
seq2  TGTGTATGAGTA  1059