BAC Information

Click to search

BAC

Clone NameB6Ng01-228A16
Chromosome16 (Build37)
Map Location 16,472,311 - 16,674,875
singlet/doubletdoublet
Overlap geneFgd4, Olfr19
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream gene4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A16.bB6Ng01-228A16.g
ACCGA041552GA041553
length1,175970
definitionB6Ng01-228A16.b B6Ng01-228A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,673,743 - 16,674,875)(16,472,311 - 16,473,276)
sequence
gggaattcatgttggtaaatatatgaagtatgtagactaggttattatgt
catgtatacatgtatcatagcattgtattgtataattggacatattgaat
tattatgtataagttaaaattcaaagtaaccttgagtggtgcgggaaaca
attttatatttcattcacatgatgtgttcttttccctctgcatttttcac
caaatggaagctcaacctgtaagtatgtgagcaccaaattgataaaatag
tttatctttttagaagtttgtttttatgtattattgttttgtgactcctc
aagggatcagacagggtttgaaatgcagcttgaatcaagaaagtttttct
tcctttctgtctctcaggaaccacttgagctaattagaaaatattactcc
ctggagacttggtattttaaaatctgtatctatcattgtttgtggaacta
atgtattatgtttagttaatcactagatagaaatgatcatagtaaaatat
aatctcaggagtatatatagagcacaaccaatattaaattgtatttccaa
ctataacaaagaatccattaagaacatatataatacaagtcttctggggt
aagggttatagtgagatgatagttctaaataagtcataccacagaatgcc
ctaaaaagcagtacactcatacacaaaacaggagttactgtcctaacaat
atggtataaactacagtttttctgtcaggttaatgttgcataatgtttta
tttaataatggaattacatcaggttcctttctcctttttaggtttattag
ctatatggagttgaaaaatgacacacaaattttcaaaatttatttctcct
gggaattttcagaggatcctctatggcaacctttccttttttgggaccta
ttttttgttcattgtacttgggtcactctgcttggggaccttcttcatta
tcattggccaccaattacagaatttcccattctttcacacacccatgtaa
tttccttccttttccatacttgttcctttgcagaacatctgcttttactt
tcttgctagcatcccaaaagaatgctaagtgaattattcagacaaagtaa
caaggttgtaatatcttatgaaaggttggcattttctcaagtatttcttt
tttcattacctatttgggagtttta
gaattcacaggtccgattcaggtgcctgcagttgttttttttttgtttgt
ttgtttgttttttttgactggtcaataaagagctaacagccaatgactgc
tcaaggggacagagactggacactgaggattcccagcgaggaaatgcaga
agagtgagaaggagaatcgccaggacagaaggaagatgatgcaaacacga
gagctgtggaagacagagaatcagccatgtaagaatcagggaaaagcggc
cccaagggccgctcccctgaatgggtctggggtagcagagataaagtata
gattttagaaagtaataagaatattggaggggagtatgttagccatgtgt
aggttcaggagtggcccagctattgagctggttaaggcatattaaaatat
aaaggttatatgtgcatgtctttcatacttgaatccagggctattagggg
tgggaggtgtgaacacacctgctgggagaatagagtggacttcaaatatt
tactgctacagatgacacacaacacgaggcttttactcactattaaaaat
tagagggatacccacccaaacactacagcctgcatgcttccaaggaggta
cacagtaaccaaggacacaggttgagaattctgcccaaatagccaagcca
gctgggatacccacagagcccagctgacatgggacctaccccatgaccat
ccacactctatctttccatactacccacttctacactagaccagatcaac
agcctaggagatacttcgtccaagcactgcagctggtgtgcttctcagga
ggtctgcagtgaccaaggacaaaggtgagaaattcacccaaccacccatg
acaaatgagacaccaacacagcttgcttgacagaagcctggtatagctgt
cccctgaaaggttctgccagagcctgaccaatacagattcgtttggtcaa
ccttcacatgaagcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16673743_16674875
seq2: B6Ng01-228A16.b_46_1219 (reverse)

seq1  TAAAACT-CCAAATAG--TATGAAAAA--GAATACTTGAG-AAATG-CAA  43
      ||||||| ||||||||   ||||||||   |||||||||| ||||| |||
seq2  TAAAACTCCCAAATAGGTAATGAAAAAAGAAATACTTGAGAAAATGCCAA  50

seq1  CC-TTCATAGG---TTATCACCTTGTT-CTTTGTCTGTAT-ATTCAC-TA  86
      || |||||| |   |||  |||||||| ||||||||| || |||||| ||
seq2  CCTTTCATAAGATATTACAACCTTGTTACTTTGTCTGAATAATTCACTTA  100

seq1  GCAT--CTTTGGGATGCTAGCA--GAAGT-AAAGCAGATG-TCTGCAAAG  130
      ||||   |||||||||||||||   |||| |||||||||| |||||||||
seq2  GCATTCTTTTGGGATGCTAGCAAGAAAGTAAAAGCAGATGTTCTGCAAAG  150

seq1  G-ACAGGT-TGG-AAAGGAAG--AAGTACATGGGTGTGTGAA--GATGGG  173
      | ||| || ||| ||||||||  || ||||||||||||||||   |||||
seq2  GAACAAGTATGGAAAAGGAAGGAAATTACATGGGTGTGTGAAAGAATGGG  200

seq1  AA--TCTGTAA-TGGTGG-CAATGATAATG-AGAAGGTTCCCAAGCAGAG  218
      ||  ||||||| |||||| ||||||||||| ||||||| |||||||||||
seq2  AAATTCTGTAATTGGTGGCCAATGATAATGAAGAAGGTCCCCAAGCAGAG  250

seq1  TGA-CCAAGTAC-ATGAAC-AAAAATA-GTCC--AAAAAGGAAAGGTTGC  262
      ||| |||||||| |||||| ||||||| ||||  ||||||||||||||||
seq2  TGACCCAAGTACAATGAACAAAAAATAGGTCCCAAAAAAGGAAAGGTTGC  300

seq1  CATAGAGGATCCTCTG-AAATTCCCAGGAG-AATAAATTTTG-AAATTTG  309
      |||||||||||||||| ||||||||||||| ||||||||||| |||||||
seq2  CATAGAGGATCCTCTGAAAATTCCCAGGAGAAATAAATTTTGAAAATTTG  350

seq1  TGTGTCATTTTTCAACTCCATATAGCTAATAAACCTAAAAAGGAGAAAGG  359
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATTTTTCAACTCCATATAGCTAATAAACCTAAAAAGGAGAAAGG  400

seq1  AACCTGATGTAATTCCATTATTAAATAAAACATTATGCAACATTAACCTG  409
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGATGTAATTCCATTATTAAATAAAACATTATGCAACATTAACCTG  450

seq1  ACAGAAAAACTGTAGTTTATACCATATTGTTAGGACAGTAACTCCTGTTT  459
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAACTGTAGTTTATACCATATTGTTAGGACAGTAACTCCTGTTT  500

seq1  TGTGTATGAGTGTACTGCTTTTTAGGGCATTCTGTGGTATGACTTATTTA  509
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGAGTGTACTGCTTTTTAGGGCATTCTGTGGTATGACTTATTTA  550

seq1  GAACTATCATCTCACTATAACCCTTACCCCAGAAGACTTGTATTATATAT  559
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCATCTCACTATAACCCTTACCCCAGAAGACTTGTATTATATAT  600

seq1  GTTCTTAATGGATTCTTTGTTATAGTTGGAAATACAATTTAATATTGGTT  609
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAATGGATTCTTTGTTATAGTTGGAAATACAATTTAATATTGGTT  650

seq1  GTGCTCTATATATACTCCTGAGATTATATTTTACTATGATCATTTCTATC  659
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTATATATACTCCTGAGATTATATTTTACTATGATCATTTCTATC  700

seq1  TAGTGATTAACTAAACATAATACATTAGTTCCACAAACAATGATAGATAC  709
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTAACTAAACATAATACATTAGTTCCACAAACAATGATAGATAC  750

seq1  AGATTTTAAAATACCAAGTCTCCAGGGAGTAATATTTTCTAATTAGCTCA  759
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAAAATACCAAGTCTCCAGGGAGTAATATTTTCTAATTAGCTCA  800

seq1  AGTGGTTCCTGAGAGACAGAAAGGAAGAAAAACTTTCTTGATTCAAGCTG  809
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCCTGAGAGACAGAAAGGAAGAAAAACTTTCTTGATTCAAGCTG  850

seq1  CATTTCAAACCCTGTCTGATCCCTTGAGGAGTCACAAAACAATAATACAT  859
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAACCCTGTCTGATCCCTTGAGGAGTCACAAAACAATAATACAT  900

seq1  AAAAACAAACTTCTAAAAAGATAAACTATTTTATCAATTTGGTGCTCACA  909
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACTTCTAAAAAGATAAACTATTTTATCAATTTGGTGCTCACA  950

seq1  TACTTACAGGTTGAGCTTCCATTTGGTGAAAAATGCAGAGGGAAAAGAAC  959
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGGTTGAGCTTCCATTTGGTGAAAAATGCAGAGGGAAAAGAAC  1000

seq1  ACATCATGTGAATGAAATATAAAATTGTTTCCCGCACCACTCAAGGTTAC  1009
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATGTGAATGAAATATAAAATTGTTTCCCGCACCACTCAAGGTTAC  1050

seq1  TTTGAATTTTAACTTATACATAATAATTCAATATGTCCAATTATACAATA  1059
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTAACTTATACATAATAATTCAATATGTCCAATTATACAATA  1100

seq1  CAATGCTATGATACATGTATACATGACATAATAACCTAGTCTACATACTT  1109
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATGATACATGTATACATGACATAATAACCTAGTCTACATACTT  1150

seq1  CATATATTTACCAACATGAATTCC  1133
      ||||||||||||||||||||||||
seq2  CATATATTTACCAACATGAATTCC  1174

seq1: chr16_16472311_16473276
seq2: B6Ng01-228A16.g_66_1035

seq1  GAATTCACAGGTCCGATTCAGGTGCCTGCAGTTGTTTTTTTTTTGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTCCGATTCAGGTGCCTGCAGTTGTTTTTTTTTTGTTTGT  50

seq1  TTGTTTGTTTTTTTTGACTGGTCAATAAAGAGCTAACAGCCAATGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTTTGACTGGTCAATAAAGAGCTAACAGCCAATGACTGC  100

seq1  TCAAGGGGACAGAGACTGGACACTGAGGATTCCCAGCGAGGAAATGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGACAGAGACTGGACACTGAGGATTCCCAGCGAGGAAATGCAGA  150

seq1  AGAGTGAGAAGGAGAATCGCCAGGACAGAAGGAAGATGATGCAAACACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGAAGGAGAATCGCCAGGACAGAAGGAAGATGATGCAAACACGA  200

seq1  GAGCTGTGGAAGACAGAGAATCAGCCATGTAAGAATCAGGGAAAAGCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGGAAGACAGAGAATCAGCCATGTAAGAATCAGGGAAAAGCGGC  250

seq1  CCCAAGGGCCGCTCCCCTGAATGGGTCTGGGGTAGCAGAGATAAAGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGCCGCTCCCCTGAATGGGTCTGGGGTAGCAGAGATAAAGTATA  300

seq1  GATTTTAGAAAGTAATAAGAATATTGGAGGGGAGTATGTTAGCCATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGAAAGTAATAAGAATATTGGAGGGGAGTATGTTAGCCATGTGT  350

seq1  AGGTTCAGGAGTGGCCCAGCTATTGAGCTGGTTAAGGCATATTAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGGAGTGGCCCAGCTATTGAGCTGGTTAAGGCATATTAAAATAT  400

seq1  AAAGGTTATATGTGCATGTCTTTCATACTTGAATCCAGGGCTATTAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTATATGTGCATGTCTTTCATACTTGAATCCAGGGCTATTAGGGG  450

seq1  TGGGAGGTGTGAACACACCTGCTGGGAGAATAGAGTGGACTTCAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTGTGAACACACCTGCTGGGAGAATAGAGTGGACTTCAAATATT  500

seq1  TACTGCTACAGATGACACACAACACGAGGCTTTTACTCACTATTAAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTACAGATGACACACAACACGAGGCTTTTACTCACTATTAAAAAT  550

seq1  TAGAGGGATACCCACCCAAACACTACAGCCTGCATGCTTCCAAGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGATACCCACCCAAACACTACAGCCTGCATGCTTCCAAGGAGGTA  600

seq1  CACAGTAACCAAGGACACAGG-TGAGAATTCTGCCCAAATAGCCAAGCCA  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAGTAACCAAGGACACAGGTTGAGAATTCTGCCCAAATAGCCAAGCCA  650

seq1  GCTGGGATACCCACAGAGCCCAGCTGACATGGGACCTACCCCATGACCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATACCCACAGAGCCCAGCTGACATGGGACCTACCCCATGACCAT  700

seq1  CCACACTCTATC-TTCCATACTACCCACTTCTACACTAGACCAGATCAAC  748
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCACACTCTATCTTTCCATACTACCCACTTCTACACTAGACCAGATCAAC  750

seq1  AGCCTAGGAGATAC-TCGTCCAAGCACTGCAGCTGGTGTGCTTCTCAGGA  797
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGAGATACTTCGTCCAAGCACTGCAGCTGGTGTGCTTCTCAGGA  800

seq1  GGTCTGCAGTGACCAAGGACAAAGGTGAGAATTTCACCCAACCACCCATG  847
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTCTGCAGTGACCAAGGACAAAGGTGAGAAATTCACCCAACCACCCATG  850

seq1  ACAAATGAGACACCAACACAGCTTGC-TGACAGGAGCCTGGTATAGCTGT  896
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  ACAAATGAGACACCAACACAGCTTGCTTGACAGAAGCCTGGTATAGCTGT  900

seq1  CCCCTGAGAGGCTCTGCCAGAGCCTGACCAATACAGATACGTATGGTCAA  946
      ||||||| ||| |||||||||||||||||||||||||| ||| |||||||
seq2  CCCCTGAAAGGTTCTGCCAGAGCCTGACCAATACAGATTCGTTTGGTCAA  950

seq1  CCATCAGATTGAGCTTGGGG  966
      || ||| ||  |||||||||
seq2  CCTTCACATGAAGCTTGGGG  970