BAC Information

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BAC

Clone NameB6Ng01-229A04
Chromosome16 (Build37)
Map Location 6,484,493 - 6,578,184
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneLOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229A04.bB6Ng01-229A04.g
ACCGA042274GA042275
length1,0581,026
definitionB6Ng01-229A04.b B6Ng01-229A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,577,121 - 6,578,184)(6,484,493 - 6,485,543)
sequence
gaattcaaatactcacaccagtgcagcaaatgttttacttattgaaccat
ctacaagcccctgaaggaagtcttttgaaccatgtgtaggatagataatt
caaggtagtaattgctctgtgacataattactaaataaaatgtatatgga
gatgtcaatatattttgttttacttaatccttgcagaagcttcagtttta
aaggttatggttatgaggataaaaacatgtcacactggagaagctttaag
gaggctagctgaaggcagaggtcctgggtggaagctcctgtggggcctcc
ctgtacagtgtcctttacaaggtagtttggtgcagaagtgggctctgcct
agcccccgttcacagtctgaaacatgctgcacattacccctctgggtctc
actatggaggatttcttggagtgcccagagtgcaccagccgcaggttcaa
gccatccctcctccaaaggtcaattgcccctttggcagttttgaaagaat
ccagatggctttaaggattacatctctgaagaaggccaagagttaggaga
agggaggagagggcagtgatgctcagtgcagagggcatgttgagcagctg
attcttaataaaaaagaattatctagtaataggaatagtggtatagggga
agtgcctcagtatactaccatgaaaatttgaactgatacatatgccctgt
gactgagataaatgaaatatcaaaaccacagtaaatatttaaggcattct
gacaggttatctttgcatgaaaacatatttttcctctctctctctctctc
tctctctctctctctctctccatctccttaaatattcaacaggatgtcac
aaatggcaagtgctagtgtgtagttaagccagttatcacacaaaaatgtt
ttatgtgatcaatggtggggcaatggtgggcaggagaatgaaaaacaaga
tgcatgtcttattttttctcaaatgagaggggctgaagtggtaaacttgt
tctgggaaggatgcattccgttccccagggaagaatggacataacccctt
aaactctc

gaattcatcggtttattgattaacaccttgctatttcttcagggtcagca
gaatctttccaccccccatttctaacctgacgtgtttccactatgaagga
gggagaaagtccctgcttcacctggtcagcatgaggcaaagcatcagggc
cccaggactgtccgctgggtcaccaagtgacttttaaactaatacctggt
accagtggttaaagcaacaatagccgcaggccaccttggtctcatacctt
ccagcgggcgctcatccaccttggtctcataccttccagcgggcgctcat
ccaccgagctccacctttctttctctttgatttgttttaacgtttgacag
tgtcttgctttcagaaagttgccccagctgagcttgaactttaaccacgg
gctttctacctgcacctgaataatgacccaaaggtttattatttgttaat
aaatgcctagaccttaagttaggcttgttccccaattaacctgtaagtca
atttacccatttatactagtctgtctctcatgtggtttgttacctatccg
agtctgaacagtcaatcttctgtttctgaggattccagagatcctcagtc
cctgttggaagccccccccccttcgattctccctcagcttattggccatt
aggttcttattgacaggtggtgcttccatacaattcccaagagattatac
gtacagtgaactgactctgtagcccaggctagccctgcttgaacatgtga
tcttctacctttagcctttccagtagctgggatgacaggccagcagcccc
aggcctgcccctcctggcgcagctctccatgcactttccccagggagaag
gtgctccttgtcccttcccccaacctagttcatctgcagcatttgtcctg
tgacaagtgagctcttccttccttccttcctttctccttccttacatcat
actcgtcatcctactctctcatcgtctcctcttttctcttcccatttctc
tcagaacctctataacttcctgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6577121_6578184
seq2: B6Ng01-229A04.b_48_1105 (reverse)

seq1  GAGAGTTTAGGGGTCTATGTCC-TTCTTCCCTGGGG-ACTGACTGCATCC  48
      ||||||||| |||  ||||||| ||||||||||||| || || |||||||
seq2  GAGAGTTTAAGGGGTTATGTCCATTCTTCCCTGGGGAACGGAATGCATCC  50

seq1  TTCCCAGAACATGTTTACCACTTCAGCCCCTTCTCATTTTGAGAAAAATT  98
      ||||||||||| |||||||||||||||||| ||||| ||||||||||| |
seq2  TTCCCAGAACAAGTTTACCACTTCAGCCCC-TCTCA-TTTGAGAAAAAAT  98

seq1  AAGACATGCATCTTG-TCTTCATTCCTCCTGCCCACCATTG-CCCACCAT  146
      ||||||||||||||| | |||||| |||||||||||||||| ||||||||
seq2  AAGACATGCATCTTGTTTTTCATT-CTCCTGCCCACCATTGCCCCACCAT  147

seq1  TGATTCACATAAAACATTTTTGTGTGATAACTGGCCTCAACTAACACACT  196
      ||| |||||||||||||||||||||||||||||| || |||| |||||||
seq2  TGA-TCACATAAAACATTTTTGTGTGATAACTGG-CTTAACT-ACACACT  194

seq1  AGCACTTGCCATTTGTGACATCCTGTTGAATATTTAAGGAGATGGAGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  AGCACTTGCCATTTGTGACATCCTGTTGAATATTTAAGGAGATG----GA  240

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAATATGTTTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAAATATGTTTTC  290

seq1  ATGCAAAGATAACCTGTCAGAATGCCTTAAATATTTACTGTGGTTTTGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGATAACCTGTCAGAATGCCTTAAATATTTACTGTGGTTTTGAT  340

seq1  ATTTCATTTATCTCAGTCACAGGGCATATGTATCAGTTCAAATTTTCATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTATCTCAGTCACAGGGCATATGTATCAGTTCAAATTTTCATG  390

seq1  GTAGTATACTGAGGCACTTCCCCTATACCACTATTCCTATTACTAGATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATACTGAGGCACTTCCCCTATACCACTATTCCTATTACTAGATAA  440

seq1  TTCTTTTTTATTAAGAATCAGCTGCTCAACATGCCCTCTGCACTGAGCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTATTAAGAATCAGCTGCTCAACATGCCCTCTGCACTGAGCAT  490

seq1  CACTGCCCTCTCCTCCCTTCTCCTAACTCTTGGCCTTCTTCAGAGATGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTCTCCTCCCTTCTCCTAACTCTTGGCCTTCTTCAGAGATGTA  540

seq1  ATCCTTAAAGCCATCTGGATTCTTTCAAAACTGCCAAAGGGGCAATTGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAAAGCCATCTGGATTCTTTCAAAACTGCCAAAGGGGCAATTGAC  590

seq1  CTTTGGAGGAGGGATGGCTTGAACCTGCGGCTGGTGCACTCTGGGCACTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAGGAGGGATGGCTTGAACCTGCGGCTGGTGCACTCTGGGCACTC  640

seq1  CAAGAAATCCTCCATAGTGAGACCCAGAGGGGTAATGTGCAGCATGTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATCCTCCATAGTGAGACCCAGAGGGGTAATGTGCAGCATGTTTC  690

seq1  AGACTGTGAACGGGGGCTAGGCAGAGCCCACTTCTGCACCAAACTACCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGAACGGGGGCTAGGCAGAGCCCACTTCTGCACCAAACTACCTT  740

seq1  GTAAAGGACACTGTACAGGGAGGCCCCACAGGAGCTTCCACCCAGGACCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGACACTGTACAGGGAGGCCCCACAGGAGCTTCCACCCAGGACCT  790

seq1  CTGCCTTCAGCTAGCCTCCTTAAAGCTTCTCCAGTGTGACATGTTTTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCAGCTAGCCTCCTTAAAGCTTCTCCAGTGTGACATGTTTTTAT  840

seq1  CCTCATAACCATAACCTTTAAAACTGAAGCTTCTGCAAGGATTAAGTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAACCATAACCTTTAAAACTGAAGCTTCTGCAAGGATTAAGTAAA  890

seq1  ACAAAATATATTGACATCTCCATATACATTTTATTTAGTAATTATGTCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATATTGACATCTCCATATACATTTTATTTAGTAATTATGTCAC  940

seq1  AGAGCAATTACTACCTTGAATTATCTATCCTACACATGGTTCAAAAGACT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATTACTACCTTGAATTATCTATCCTACACATGGTTCAAAAGACT  990

seq1  TCCTTCAGGGGCTTGTAGATGGTTCAATAAGTAAAACATTTGCTGCACTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGGGCTTGTAGATGGTTCAATAAGTAAAACATTTGCTGCACTG  1040

seq1  GTGTGAGTATTTGAATTC  1064
      ||||||||||||||||||
seq2  GTGTGAGTATTTGAATTC  1058


seq1: chr16_6484493_6485543
seq2: B6Ng01-229A04.g_59_1084

seq1  GAATTCATCGGTTTATTGATTAACACCTTGCTATTTCTTCAGGGTCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGGTTTATTGATTAACACCTTGCTATTTCTTCAGGGTCAGCA  50

seq1  GAATCTTTCCACCCCCCATTTCTAACCTGACGTGTTTCCACTATGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCCACCCCCCATTTCTAACCTGACGTGTTTCCACTATGAAGGA  100

seq1  GGGAGAAAGTCCCTGCTTCACCTGGTCAGCATGAGGCAAAGCATCAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGTCCCTGCTTCACCTGGTCAGCATGAGGCAAAGCATCAGGGC  150

seq1  CCCAGGACTGTCCGCTGGGTCACCAAGTGACTTTTAAACTAATACCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACTGTCCGCTGGGTCACCAAGTGACTTTTAAACTAATACCTGGT  200

seq1  ACCAGTGGTTAAAGCAACAATAGCCGCAGGCCACCTTGGTCTCATACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGTTAAAGCAACAATAGCCGCAGGCCACCTTGGTCTCATACCTT  250

seq1  CCAGCGGGCGCTCATCCACCTTGGTCTCATACCTTCCAGCGGGCGCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGGCGCTCATCCACCTTGGTCTCATACCTTCCAGCGGGCGCTCAT  300

seq1  CCACCGAGCTCCACCTTTCTTTCTCTTTGATTTGTTTTAACGTTTGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGAGCTCCACCTTTCTTTCTCTTTGATTTGTTTTAACGTTTGACAG  350

seq1  TGTCTTGCTTTCAGAAAGTTGCCCCAGCTGAGCTTGAACTTTAACCACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCTTTCAGAAAGTTGCCCCAGCTGAGCTTGAACTTTAACCACGG  400

seq1  GCTTTCTACCTGCACCTGAATAATGACCCAAAGGTTTATTATTTGTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTACCTGCACCTGAATAATGACCCAAAGGTTTATTATTTGTTAAT  450

seq1  AAATGCCTAGACCTTAAGTTAGGCTTGTTCCCCAATTAACCTGTAAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTAGACCTTAAGTTAGGCTTGTTCCCCAATTAACCTGTAAGTCA  500

seq1  ATTTACCCATTTATACTAGTCTGTCTCTCATGTGGTTTGTTACCTATCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCATTTATACTAGTCTGTCTCTCATGTGGTTTGTTACCTATCCG  550

seq1  AGTCTGAACAGTCAATCTTCTGTTTCTGAGGATTCCAGAGATCCTCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAACAGTCAATCTTCTGTTTCTGAGGATTCCAGAGATCCTCAGTC  600

seq1  CCTGTTGGAAGCCCCCCCCCCTTCGATTCTCCCTCAGCTTATTGGCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGAAGCCCCCCCCCCTTCGATTCTCCCTCAGCTTATTGGCCATT  650

seq1  AGGTTCTTATTGACAGGTGGTGCTTCCATACAATTCCCAAGAGATTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTATTGACAGGTGGTGCTTCCATACAATTCCCAAGAGATTATAC  700

seq1  GTACAGTGAACTGACTCTGTAGCCCAGGCTAGCCCTGCTTGAACATGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTGAACTGACTCTGTAGCCCAGGCTAGCCCTGCTTGAACATGTGA  750

seq1  TCTTCTACCTTTAGCCTTTCCAGTAGCTGGGATGACAGGCCAGCAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACCTTTAGCCTTTCCAGTAGCTGGGATGACAGGCCAGCAGCCCC  800

seq1  AGGCCTGCCCCTCCTGGCGCAGCTCTCCATGCACTTTCCCCAGGGAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGCCCCTCCTGGCGCAGCTCTCCATGCACTTTCCCCAGGGAGAAG  850

seq1  GTGCTCCTTGTCCCTTCCCCCAAACCTAGTTCATCTGCAGCATTTGTCCT  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGCTCCTTGTCCCTTCCCCC-AACCTAGTTCATCTGCAGCATTTGTCCT  899

seq1  GTGACAAGTGAGCTCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTTTCTTC  950
      ||||||||||||||||||||||||||||||||||| ||||||||| | ||
seq2  GTGACAAGTGAGCTCTTCCTTCCTTCCTTCCTTTC-TCCTTCCTTACATC  948

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTCTCTCTTT  1000
       | |      || |  | |||| |  ||  || |  | ||| |||   ||
seq2  ATAC------TCGT--CATCCTAC--TCTCTCAT--CGTCTCCTC---TT  983

seq1  TTCTCTTTCTCTCTTTTCTTCTTCTAGGAACCTCTATAAACTTCCTGAGA  1050
      ||||||   || | ||||    |||  |||||||||| ||||||||||||
seq2  TTCTCT---TCCCATTTC----TCTCAGAACCTCTAT-AACTTCCTGAGA  1025

seq1  C  1051
      |
seq2  C  1026


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