BAC Information

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BAC

Clone NameB6Ng01-230D04
Chromosome16 (Build37)
Map Location 22,436,810 - 22,436,981
singlet/doubletsinglet
Overlap geneEtv5
Upstream geneVps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507
Downstream geneDgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230D04.bB6Ng01-230D04.g
ACCGA043125GA043126
length1,201403
definitionB6Ng01-230D04.b B6Ng01-230D04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccctttatatccctcacagagcgacactggtcagctctatga
taacccttgccacacttagagcaaagagtgagagtccctccctgtttatc
tggagctctgcaatctttcttaaaatgcccaggctttccgcagttaaaac
atgtcctctgatcatttctgcccatggagcggttttgggattgaaggatg
gcagccgctaaacctgcattgctgaggggtcccccaagctctcgacagac
cctgagccagtcttgtaagcctttgttctttcttggggctatggccgctc
ggcactcctttgtggcttgctcgtagattagctgttctatgagaggcgca
gcttgctctgactctccaaaaatacgctctgctgcctctgtcattctggc
cacaaaatctgagaaagattcctgaggtccctggattatctttgttaact
gaccagtggtttcacctgctcgagagagcgccttccaggccctaatagcc
gtggaagaaatctgggcataagctccccaatggtagtttgtctgatcagc
agaataagctccctgacccgttaacaagtcaaaagtccaatctctctgct
ctggagtcaaagcagctgcgtttgctcgggcctgcgcctgtgcagcttcg
tgccaaagcgctttccattccatatatttgcccatactagggagagcggc
ttttacaaccgtctgccaatcagcaggcgttagtgccatgccagcgagcc
tgtctaactgcaccaaggtgaaattagcattggttccgtatttacgaacc
gactcggcaatttccttaatctgtacgtattctaccggagcgtggacacg
cccaccctcggctccttcaagaccggaaatgcctgttctattttcctttg
ttcctctcggggaatgaatgagtctgcgcactgcctctctgcgcattgct
gacgcactacgggctgacgcactacgcagggcggggactccgcatagggc
gggagtgcacttggtagccgattgccctgagccatagcaaactgggcctt
cgcagcgctttggctttttctgacgattagctggctgtaatgggctgctc
tcttcccagtctgttcctcagaggagattctcaatctggctcgaagctac
taagagctgctccctgtgagagtctcatctatatgaagccgagtatatac
t
aatgccaacctgagctacttaagaccctgtctcaaaaagaaaaaaaaaaa
tttccccatctcttcaaccttgcccacctggttaccaggcaaccactaga
ctgaggtctcactttaaggaaggcaatcaaggtaactccctacaggcatg
cccagaggccatcatctctcaaatgattctaggttatgttaaattagcac
tatcacaaatatcggtctttgttttaaaaccaggataatgttggcctcag
aaaaaagtagaaaagttctcactctgtttctacacccttgaagggctata
taaagtttgtactatttagttttttagttggtagaattcacttttgaagc
gatctgactttatgtctttaattttttttagtgtgtgtgtgtgtgtgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_22436810_22436981
seq2: B6Ng01-230D04.g_98_477 (reverse)

seq1  CACACACACACACACACACACACT-----TTAGTATTGCC----TGCCTG  41
      ||||||||||||||||||||||||       | ||  | |     | | |
seq2  CACACACACACACACACACACACTAAAAAAAATTAAAGACATAAAGTCAG  50

seq1  TCTACCACAAAAGCCAAAACCAACCAAAAAAAAAATCAAACCCTCCCTTA  91
          |  ||||||   ||  | |||||  ||||||  |||   | |    
seq2  ATCGCTTCAAAAG-TGAATTCTACCAACTAAAAAACTAAATAGTAC----  95

seq1  CTTGCACTGAAAAATGACCTTCTAGGACATTTGTTG---CAGAGT-----  133
           |||  | |  | ||||| |||     ||| |   ||||||     
seq2  ---AAACTTTATATAGCCCTTCAAGG----GTGTAGAAACAGAGTGAGAA  138

seq1  -TTTTGT-TTTGTTTTTG---------TTTTCTTTTGTTTGAGACAGGGT  172
       |||| |  || ||| ||         || || |   ||| | |||  | 
seq2  CTTTTCTACTTTTTTCTGAGGCCAACATTATCCTGGTTTTAAAACAAAGA  188

seq1  --------------------------------------------------  172
                                                        
seq2  CCGATATTTGTGATAGTGCTAATTTAACATAACCTAGAATCATTTGAGAG  238

seq1  --------------------------------------------------  172
                                                        
seq2  ATGATGGCCTCTGGGCATGCCTGTAGGGAGTTACCTTGATTGCCTTCCTT  288

seq1  --------------------------------------------------  172
                                                        
seq2  AAAGTGAGACCTCAGTCTAGTGGTTGCCTGGTAACCAGGTGGGCAAGGTT  338

seq1  ------------------------------------------  172
                                                
seq2  GAAGAGATGGGGAAATTTTTTTTTTTCTTTTTGAGACAGGGT  380