BAC Information

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BAC

Clone NameB6Ng01-232G17
Chromosome16 (Build37)
Map Location 30,063,995 - 30,193,375
singlet/doubletdoublet
Overlap geneHes1, EG547263
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik
Downstream gene1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232G17.bB6Ng01-232G17.g
ACCGA044763GA044764
length1,0211,111
definitionB6Ng01-232G17.b B6Ng01-232G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,063,995 - 30,065,023)(30,192,295 - 30,193,375)
sequence
gaattccccgatcgccacccttgggcgtgcgctccctgcccggaaggatt
gaccttggccggggcgggggaagggaggccagcgcgggggctcagctttc
gggccgccgcccccgcggattcctggctcgcccgggccggaggagggggc
cccggacacacggacgcacgcacacaccccacacgcagcgcgcgccaatg
agccctggccaggcgcagggggcggggttttcccaggctcgagcacagca
gctgctatttaccttcttggcttctcccggggaccagaggcggcccccgc
tccctcccggccggccgccgccggcccccgcctccctgcccccggggcgc
gcgcacacacactcacacacgcacgcacacacacacatcctctgggcccc
ggccgcagccgcggcggcaataaaacatcctggcacgtgctccgactcca
ggcgcgccctcgccggccggctgatgtcaaactgcagctcggctggtgga
gctcttaaagggctcgcgcgcggggcgccgaggccgccttggccgcccgc
ggggtgaggaggggagagccccgactcccttgcccgccgtctatccgtat
tgccaactgggagcctgcggggagaaaggtagagagagtggcggaggaac
gagcgcgcccctcctgtcgcatttgctatcaaagccccccttgtttcatt
ttttttttcgtttgaaattccatttcctttctgcccagtaggaaattatt
ctgattgttttctggagaagcgtgagggtccaaggttgcatttccagaga
ggaatgaatgggctagagggagacaagcatccaaagacaccttgctccga
aaacccctggctgtgaaggcatttggggggacggtaagggcatgttttag
cgtgtggggttagatctccccaacctcatgagcagtttgattccctaact
acagagttcgagcgggaattccggagatttagagtatcactcctcttacc
tgttcccttcttttttcaatc
gaattcagtggcacacagttcctcttcttcaccatgatataaagagagac
atgggctgtaaaaatgcctgaccctgcaggaggaggatgggcagaaggca
gagataggctcatacatggttacgagggaaaggtcagaggcgaaattttc
cttagaaccaacctccatccccttctttatggttaggaaactgaggctgg
gagaggggcagggactcccccagaggcagagtctgacacccccatcctga
catcctaccaactctgcggcccaaccaggccaggccatgggcgtctactg
taatcacaaccaaaatcaagccattcagctgattgttgagcaggtgaatt
gttgaaaggatatttcctggttaacggcacctcccagggcaatgtgtgtc
tttcccatccttggcttttaagagaaggcaagacggacggacggacggac
agacggacggacagttctttaggaggttttcttggtgtcggtcagtgtcc
acgtggagggattttaggtccaggaacagagtcattctggcctccactga
gcgcaccaataggtacttagatgagagaggaatctgtgttgtgggtggac
tatcatggcacatacgcattcatatacactctcacacatacaccacacac
atgcactcatacacactctcacacatataccacacacacactcaaacaca
ctcttacgtacaccaaacacacacacataaaccacgcataccacacacac
acaccacacacacacacacacacgtatgcactcacacacatttacacact
cacttcattcacattcacacacatattcacatactcatactatacacata
acatatacactcacacgtcacaaaacacacagcacaacacaacataacac
ataacacactcacttgcaaacacatataccaccaaacaacaacatatacc
acacacacaggtcatataacacttcttcacaacacatatttcccataata
caatattaataactcacaactacatactcacacacaccacattataacca
cacaccacattactacaccattcacacaataacaccacaccacacatttc
ccttataacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30063995_30065023
seq2: B6Ng01-232G17.b_45_1065

seq1  GAATTCCCCGATCGCCACCCTTGGGCGTGCGCTCCCTGCCCGGAAGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCGATCGCCACCCTTGGGCGTGCGCTCCCTGCCCGGAAGGATT  50

seq1  GACCTTGGCCGGGGCGGGGGAAGGGAGGCCAGCGCGGGGGCTCAGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGCCGGGGCGGGGGAAGGGAGGCCAGCGCGGGGGCTCAGCTTTC  100

seq1  GGGCCGCCGCCCCCGCGGATTCCTGGCTCGCCCGGGCCGGAGGAGGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGCCGCCCCCGCGGATTCCTGGCTCGCCCGGGCCGGAGGAGGGGGC  150

seq1  CCCGGACACACGGACGCACGCACACACCCCACACGCAGCGCGCGCCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGACACACGGACGCACGCACACACCCCACACGCAGCGCGCGCCAATG  200

seq1  AGCCCTGGCCAGGCGCAGGGGGCGGGGTTTTCCCAGGCTCGAGCACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCCAGGCGCAGGGGGCGGGGTTTTCCCAGGCTCGAGCACAGCA  250

seq1  GCTGCTATTTACCTTCTTGGCTTCTCCCGGGGACCAGAGGCGGCCCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATTTACCTTCTTGGCTTCTCCCGGGGACCAGAGGCGGCCCCCGC  300

seq1  TCCCTCCCGGCCGGCCGCCGCCGGCCCCCGCCTCCCTGCCCCCGGGGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCGGCCGGCCGCCGCCGGCCCCCGCCTCCCTGCCCCCGGGGCGC  350

seq1  GCGCACACACACTCACACACGCACGCACACACACACATCCTCTGGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACACACTCACACACGCACGCACACACACACATCCTCTGGGCCCC  400

seq1  GGCCGCAGCCGCGGCGGCAATAAAACATCCTGGCACGTGCTCCGACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGCCGCGGCGGCAATAAAACATCCTGGCACGTGCTCCGACTCCA  450

seq1  GGCGCGCCCTCGCCGGCCGGCTGATGTCAAACTGCAGCTCGGCTGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGCCCTCGCCGGCCGGCTGATGTCAAACTGCAGCTCGGCTGGTGGA  500

seq1  GCTCTTAAAGGGCTCGCGCGCGGGGCGCCGAGGCCGCCTTGGCCGCCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAAAGGGCTCGCGCGCGGGGCGCCGAGGCCGCCTTGGCCGCCCGC  550

seq1  GGGGTGAGGAGGGGAGAGCCCCGACTCCCTTGCCCGCCGTCTATCCGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGGAGGGGAGAGCCCCGACTCCCTTGCCCGCCGTCTATCCGTAT  600

seq1  TGCCAACTGGGAGCCTGCGGGGAGAAAGGTAGAGAGAGTGGCGGAGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTGGGAGCCTGCGGGGAGAAAGGTAGAGAGAGTGGCGGAGGAAC  650

seq1  GAGCGCGCCCCTCCTGTCGCA-TTGCTATCAAAGCCCCCCTTG-TTCATT  698
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  GAGCGCGCCCCTCCTGTCGCATTTGCTATCAAAGCCCCCCTTGTTTCATT  700

seq1  TTTTTTTTCGTTTGAAATTCCATTTCCTTTCTGCCCAGTAGGAAATTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCGTTTGAAATTCCATTTCCTTTCTGCCCAGTAGGAAATTATT  750

seq1  CTGATTGTTTTCTGGAGAAGCGTGA-GGTCCAAGGTTGCAATTCCAAGAG  797
      ||||||||||||||||||||||||| |||||||||||||| |||| ||||
seq2  CTGATTGTTTTCTGGAGAAGCGTGAGGGTCCAAGGTTGCATTTCC-AGAG  799

seq1  AGGAATGAATGGGCTAGAGGGAGACAAGCATCCAAAAGACACCTTGCTCC  847
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGAATGAATGGGCTAGAGGGAGACAAGCATCC-AAAGACACCTTGCTCC  848

seq1  GAAAA-CCCTGGCTGTGAAGGCATTTGGGGGGACGGTAAGGGCATG-TTT  895
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAAACCCCTGGCTGTGAAGGCATTTGGGGGGACGGTAAGGGCATGTTTT  898

seq1  AGCGTGTGGGGTTTAGTATCTCCCCAACCTCATGAGCAGTTTTGACTCCC  945
      ||||||||||| |||| |||||||||||||||||||||| ||||| | ||
seq2  AGCGTGTGGGG-TTAG-ATCTCCCCAACCTCATGAGCAG-TTTGA-TTCC  944

seq1  CTAAACATACAGAGTTCGAGCGGGAATTCCGGAAGACATTAGAGTAACAC  995
      ||||   ||||||||||||||||||||||||| |||  |||||||| |||
seq2  CTAA--CTACAGAGTTCGAGCGGGAATTCCGG-AGA-TTTAGAGTATCAC  990

seq1  ATCCTCTTTACCTTGTTCCCTCCTTTTTTCAATC  1029
       ||||| ||||| |||||||| ||||||||||||
seq2  -TCCTC-TTACC-TGTTCCCTTCTTTTTTCAATC  1021

seq1: chr16_30192295_30193375
seq2: B6Ng01-232G17.g_69_1179 (reverse)

seq1  GTGTTATATGTG-AATGTGT-GTGT-GTGTTA-TGTGTGAAT-GTGTAGT  45
      |||||||| | | ||||||| |||| |||||| ||||||||| |||||||
seq2  GTGTTATAAGGGAAATGTGTGGTGTGGTGTTATTGTGTGAATGGTGTAGT  50

seq1  -ATGT-GTGTGTG--TAT-ATGT-GTGTGTGTGAGTATGTAG-TGTGAGT  88
       |||| |||||||  ||| |||| |||||||||||||||||| |||||||
seq2  AATGTGGTGTGTGGTTATAATGTGGTGTGTGTGAGTATGTAGTTGTGAGT  100

seq1  --ATAATA-TGTA-TATGGG-AATATGTG-TGTGA--GAGTG-TATATGA  129
         ||||| |||| |||||| |||||||| |||||   |||| |||||||
seq2  TATTAATATTGTATTATGGGAAATATGTGTTGTGAAGAAGTGTTATATGA  150

seq1  -CTGTGTGTGTGGTATATGT--GTGTTT-GTGGTATATGTGTTTGCAAGT  175
       |||||||||||||||||||   ||||| |||||||||||||||||||||
seq2  CCTGTGTGTGTGGTATATGTTGTTGTTTGGTGGTATATGTGTTTGCAAGT  200

seq1  GAGTGTG-TATGTG-TATGTTGTG-TGTGCTGTGTG-TTTGTGACGTGTG  221
      ||||||| |||||| ||||||||| ||||||||||| |||||||||||||
seq2  GAGTGTGTTATGTGTTATGTTGTGTTGTGCTGTGTGTTTTGTGACGTGTG  250

seq1  AGTGTATATG-TATGTGTATAGTATGAGTATGTGAATATGTGTGTGAATG  270
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATATGTTATGTGTATAGTATGAGTATGTGAATATGTGTGTGAATG  300

seq1  TGAATGAAGTGAGTGTGTAAATGTGTGTGAGTGCATACGTGTGTGTGTGT  320
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAGTGAGTGTGTAAATGTGTGTGAGTGCATACGTGTGTGTGTGT  350

seq1  GTGTGTGGTGTGTGTGTGTGGTATGCGTGGTTTATGTGTGTGTGTTTGGT  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTGTGTGTGTGTGGTATGCGTGGTTTATGTGTGTGTGTTTGGT  400

seq1  GTACGTAAGAGTGTGTTTGAGTGTGTGTGTGGTATATGTGTGAGAGTGTG  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTAAGAGTGTGTTTGAGTGTGTGTGTGGTATATGTGTGAGAGTGTG  450

seq1  TATGAGTGCATGTGTGTGGTGTATGTGTGAGAGTGTATATGAATGCGTAT  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGCATGTGTGTGGTGTATGTGTGAGAGTGTATATGAATGCGTAT  500

seq1  GTGCCATGATAGTCCACCCACAACACAGATTCCTCTCTCATCTAAGTACC  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATGATAGTCCACCCACAACACAGATTCCTCTCTCATCTAAGTACC  550

seq1  TATTGGTGCGCTCAGTGGAGGCCAGAATGACTCTGTTCCTGGACCTAAAA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTGCGCTCAGTGGAGGCCAGAATGACTCTGTTCCTGGACCTAAAA  600

seq1  TCCCTCCACGTGGACACTGACCGACACCAAGAAAACCTCCTAAAGAACTG  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACGTGGACACTGACCGACACCAAGAAAACCTCCTAAAGAACTG  650

seq1  TCCGTCCGTCTGTCCGTCCGTCCGTCCGTCTTGCCTTCTCTTAAAAGCCA  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCCGTCTGTCCGTCCGTCCGTCCGTCTTGCCTTCTCTTAAAAGCCA  700

seq1  AGGATGGGAAAGACACACATTGCCCTGGGAGGTGCCGTTAACCAGGAAAT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGAAAGACACACATTGCCCTGGGAGGTGCCGTTAACCAGGAAAT  750

seq1  ATCCTTTCAACAATTCACCTGCTCAACAATCAGCTGAATGGCTTGATTTT  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCAACAATTCACCTGCTCAACAATCAGCTGAATGGCTTGATTTT  800

seq1  GGTTGTGATTACAGTAGACGCCCATGGCCTGGCCTGGTTGGGCCGCAGAG  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGATTACAGTAGACGCCCATGGCCTGGCCTGGTTGGGCCGCAGAG  850

seq1  TTGGTAGGATGTCAGGATGGGGGTGTCAGACTCTGCCTCTGGGGGAGTCC  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGATGTCAGGATGGGGGTGTCAGACTCTGCCTCTGGGGGAGTCC  900

seq1  CTGCCCCTCTCCCAGCCTCAGTTTCCTAACCATAAAGAAGGGGATGGAGG  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCTCCCAGCCTCAGTTTCCTAACCATAAAGAAGGGGATGGAGG  950

seq1  TTGGTTCTAAGGAAAATTTCGCCTCTGACCTTTCCCTCGTAACCATGTAT  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTAAGGAAAATTTCGCCTCTGACCTTTCCCTCGTAACCATGTAT  1000

seq1  GAGCCTATCTCTGCCTTCTGCCCATCCTCCTCCTGCAGGGTCAGGCATTT  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATCTCTGCCTTCTGCCCATCCTCCTCCTGCAGGGTCAGGCATTT  1050

seq1  TTACAGCCCATGTCTCTCTTTATATCATGGTGAAGAAGAGGAACTGTGTG  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCCATGTCTCTCTTTATATCATGGTGAAGAAGAGGAACTGTGTG  1100

seq1  CCACTGAATTC  1081
      |||||||||||
seq2  CCACTGAATTC  1111