BAC Information

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BAC

Clone NameB6Ng01-238E22
Chromosome16 (Build37)
Map Location 86,436,634 - 86,590,744
singlet/doubletdoublet
Overlap genenone
Upstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238E22.bB6Ng01-238E22.g
ACCGA049038GA049039
length1,1371,128
definitionB6Ng01-238E22.b B6Ng01-238E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,436,634 - 86,437,774)(86,589,606 - 86,590,744)
sequence
gaattcctcttgaaccagtgggtactgtatataaaatatcatatgttaag
aggaaaatctgtttagttctagtaaatttgtcaaacaataaatctattct
tcattttattttcattccttttttggtttattcattatgctttattttca
aagaaacaatcatgtggatttaggatcttccttgatattatatttttaag
taatggcatttaaattctgccattgaatgtatttttattaatacttttac
ccttgtcttaataatcccaagtttaggacctatctaaattactacttgaa
accaaatgagtttccatttgtatgtttattactttcattgtgcataggaa
taacatgggaatcaagtgtcatgtagcactaaaggcccccagattcagaa
catggacattgttttttgcttctttgatacgtggcagggaaccaattatg
atggcattcaggaaaacaaacagcaatacaaccttgcttctctacctcct
ttagaattttcaaataaatttgtaatgacaacaccaacaaaaacttttta
atgtcttgagatgaactcagaaaactttataggcataaccagcaatgaag
cacttgcaatgagaggcagatgttgtgcttaatgtcaaactgaaaattgt
gcaaaggatataatcgaaaagttaaagaggattaatgtgttttttttatg
ctatagggttggcaacatattaacaaattctttattcaatctctgagtgt
ttggtcaaaatcaacttccttaaactgcatcgatacctttttacacttgt
aacaaataaaattctgatatcagacaaaagtagcaatttgggagtatttt
ataaaatagagcagtattcataattgaaggcacaataagctcaatagcaa
atttgattttatgttcatctcttctcatatcctgtcataaatcatgcctg
aaaagttgaccatagaagtttattcttatccaaaataaatttcgtatttg
ttactaatttgagtctagctagagatctgtaaaactactaagattcagcg
aggcgggggtggttgcacgccttaattccaggcacttgggaaaggcaagg
caaggtggatctatgagtttgaaggccagcctggtct
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtctaccttcttgtgttctttatatatattggatattattcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggttgcctt
tttgtcttattgatggtgtcttttgccttacttgccaaaagcaatctaca
gattcaatgcaatccccatcaaaattccaactcaattcttcaacgaatta
gaaagggcaatctgcaaatttatctggaataacaaaaaacctaagatagc
aaaaactccctcaagaataaaaggacctctggtggaatcaccaagcctga
cctaaggctgtactacagaccaattgtgataaaaactgcaggcaataaat
actactaacaatatagtaaatttgggtattccaagaaacaggaaagaaaa
agagtacacttgttatttttgttcttttgttttgtttgctcttatatggt
ggggaatgactataggccagggcaatcttgtccatgtttttactttttac
ttttccattttttttcattaaaatgaattcattaggtgttatgtagtttt
ctgatttttttggaatgtcagttagggtaaggtcattttttctggtcatt
ttctaccaccaggatgtggggtggaacttaattgaactatttttcaccat
ttggttttctgcatggaaaacaatatagtatccattctttgtaagcttca
ttgtttgacaccatgaaaataaaaatattttaggttctcataacttatat
cctgaaagttaggttaagaggggatgctatcttaatcactgttctattac
tgtgaagaaaacatcaaagaatacatgtaattcaaatcttgctacacctt
tggatgtgtagctcattattatcaaagcagggagcacactgcatgcagac
aggttctggaacagtatctgtgagctgcacctaattccttgagcagagag
tgcacctgatcatggtatgggcttttaaaattcaaggctcactcccacaa
ttgaacacatggtctcaattgggcaatagtagtattctttctgatctttc
aacagtccactctagtgactaagcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86436634_86437774
seq2: B6Ng01-238E22.b_47_1183

seq1  GAATTCCTCTTGAACCAGTGGGTACTGTATATAAAATATCATATGTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGAACCAGTGGGTACTGTATATAAAATATCATATGTTAAG  50

seq1  AGGAAAATCTGTTTAGTTCTAGTAAATTTGTCAAACAATAAATCTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCTGTTTAGTTCTAGTAAATTTGTCAAACAATAAATCTATTCT  100

seq1  TCATTTTATTTTCATTCCTTTTTTGGTTTATTCATTATGCTTTATTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATTTTCATTCCTTTTTTGGTTTATTCATTATGCTTTATTTTCA  150

seq1  AAGAAACAATCATGTGGATTTAGGATCTTCCTTGATATTATATTTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAATCATGTGGATTTAGGATCTTCCTTGATATTATATTTTTAAG  200

seq1  TAATGGCATTTAAATTCTGCCATTGAATGTATTTTTATTAATACTTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCATTTAAATTCTGCCATTGAATGTATTTTTATTAATACTTTTAC  250

seq1  CCTTGTCTTAATAATCCCAAGTTTAGGACCTATCTAAATTACTACTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTTAATAATCCCAAGTTTAGGACCTATCTAAATTACTACTTGAA  300

seq1  ACCAAATGAGTTTCCATTTGTATGTTTATTACTTTCATTGTGCATAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGAGTTTCCATTTGTATGTTTATTACTTTCATTGTGCATAGGAA  350

seq1  TAACATGGGAATCAAGTGTCATGTAGCACTAAAGGCCCCCAGATTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGGAATCAAGTGTCATGTAGCACTAAAGGCCCCCAGATTCAGAA  400

seq1  CATGGACATTGTTTTTTGCTTCTTTGATACGTGGCAGGGAACCAATTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACATTGTTTTTTGCTTCTTTGATACGTGGCAGGGAACCAATTATG  450

seq1  ATGGCATTCAGGAAAACAAACAGCAATACAACCTTGCTTCTCTACCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTCAGGAAAACAAACAGCAATACAACCTTGCTTCTCTACCTCCT  500

seq1  TTAGAATTTTCAAATAAATTTGTAATGACAACACCAACAAAAACTTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTCAAATAAATTTGTAATGACAACACCAACAAAAACTTTTTA  550

seq1  ATGTCTTGAGATGAACTCAGAAAACTTTATAGGCATAACCAGCAATGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGAGATGAACTCAGAAAACTTTATAGGCATAACCAGCAATGAAG  600

seq1  CACTTGCAATGAGAGGCAGATGTTGTGCTTAATGTCAAACTGAAAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCAATGAGAGGCAGATGTTGTGCTTAATGTCAAACTGAAAATTGT  650

seq1  GCAAAGGATATAATCGAAAAGTTAAAGAGGATTAATGTGTTTTTTTTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGATATAATCGAAAAGTTAAAGAGGATTAATGTGTTTTTTTTATG  700

seq1  CTATAGGGTTGGCAACATATTAACAAATTCTTTATTCAATCTCTGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGGTTGGCAACATATTAACAAATTCTTTATTCAATCTCTGAGTGT  750

seq1  TTGGTCAAAATCAACTTCCTTAAACTGCATCGATACCTTTTTACACTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAAAATCAACTTCCTTAAACTGCATCGATACCTTTTTACACTTGT  800

seq1  AACAAATAAAATTCTGATATCAGACAAAAGTAGCAAATTTGGGAGTATTT  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACAAATAAAATTCTGATATCAGACAAAAGTAGC-AATTTGGGAGTATTT  849

seq1  TATAAAATAGAGCAGTATTCATAATTGAAGGCACAATAAGCTCAATAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAGAGCAGTATTCATAATTGAAGGCACAATAAGCTCAATAGCA  899

seq1  AATTTGATTTTATGTTCATCTCTTCTCATATCCTGTCATAAATCATGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTTTATGTTCATCTCTTCTCATATCCTGTCATAAATCATGCCT  949

seq1  GAAAAGTTTGACCCATAGAAGTTTATTCTTATCCAAAATAAA-TTCGTAT  999
      |||||| |||| |||||||||||||||||||||||||||||| |||||||
seq2  GAAAAG-TTGA-CCATAGAAGTTTATTCTTATCCAAAATAAATTTCGTAT  997

seq1  TTGTTACTAAATTTTGAGTCTAGCTAAGAAGATCTTGTTAAAACTACTAA  1049
      ||||||||||  ||||||||||||||   ||||||   ||||||||||||
seq2  TTGTTACTAA--TTTGAGTCTAGCTA--GAGATCT--GTAAAACTACTAA  1041

seq1  GATTCA---AGCCGAGCGTGGTGGTGCACGCCTTTAATCCCAGCACTTGG  1096
      ||||||   || || | |||||  |||||||||| | |||  ||||||||
seq2  GATTCAGCGAGGCGGGGGTGGT--TGCACGCCTTAATTCCAGGCACTTGG  1089

seq1  --AAGGCAAAGGCAGGTGGATCTATGAGTTTG-AGGCCAGCCTGGTCT  1141
        ||||||| |  ||||||||||||||||||| |||||||||||||||
seq2  GAAAGGCAAGGCAAGGTGGATCTATGAGTTTGAAGGCCAGCCTGGTCT  1137

seq1: chr16_86589606_86590744
seq2: B6Ng01-238E22.g_66_1193 (reverse)

seq1  GAGTGCTTAGTCACTAAGGAGTGGAACTGTTTGAAAGGATCAGAAAGATT  50
      ||||||||||||||||  |||||| |||| |||||| ||||||||||| |
seq2  GAGTGCTTAGTCACTA--GAGTGG-ACTG-TTGAAA-GATCAGAAAGAAT  45

seq1  ACTACCTATGGCCAAATTGGAGGACATGTG-TCATTTGTGGGAGGTGAGC  99
      |||| |||| ||| |||| |||  |||||| ||| |||||||| ||||||
seq2  ACTA-CTATTGCCCAATT-GAGACCATGTGTTCAATTGTGGGA-GTGAGC  92

seq1  TTTGAATTTTAAAAAAGCCCATACCATGACCAGGTTGCACTCTCTGCTCA  149
       |||||||||  ||||||||||||||||| |||| |||||||||||||||
seq2  CTTGAATTTT--AAAAGCCCATACCATGATCAGG-TGCACTCTCTGCTCA  139

seq1  GGGATTAGGGTGCAGCTCACAGATACTGTTCCAGAACCTGTCTGCATGCA  199
       ||| |  ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAGGTGCAGCTCACAGATACTGTTCCAGAACCTGTCTGCATGCA  189

seq1  GTTGTGCTCCCTGCCTTGATAATAATGGGCTACACATCCAAAGGTGTAGC  249
      | |||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  G-TGTGCTCCCTGCTTTGATAATAATGAGCTACACATCCAAAGGTGTAGC  238

seq1  AAGATTTGAATTACATGTATTCTTTGATGTTTTCTTCACAGTAATAGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTGAATTACATGTATTCTTTGATGTTTTCTTCACAGTAATAGAAC  288

seq1  AGTGATTAAGATAGCATCCCCTCTTAACCTAACTTTCAGGATATAAGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTAAGATAGCATCCCCTCTTAACCTAACTTTCAGGATATAAGTTA  338

seq1  TGAGAACCTAAAATATTTTTATTTTCATGGTGTCAAACAATGAAGCTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCTAAAATATTTTTATTTTCATGGTGTCAAACAATGAAGCTTAC  388

seq1  AAAGAATGGATACTATATTGTTTTCCATGCAGAAAACCAAATGGTGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGATACTATATTGTTTTCCATGCAGAAAACCAAATGGTGAAAA  438

seq1  ATAGTTCAATTAAGTTCCACCCCACATCCTGGTGGTAGAAAATGACCAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAATTAAGTTCCACCCCACATCCTGGTGGTAGAAAATGACCAGA  488

seq1  AAAAATGACCTTACCCTAACTGACATTCCAAAAAAATCAGAAAACTACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACCTTACCCTAACTGACATTCCAAAAAAATCAGAAAACTACAT  538

seq1  AACACCTAATGAATTCATTTTAATGAAAAAAAATGGAAAAGTAAAAAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTAATGAATTCATTTTAATGAAAAAAAATGGAAAAGTAAAAAGTA  588

seq1  AAAACATGGACAAGATTGCCCTGGCCTATAGTCATTCCCCACCATATAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGGACAAGATTGCCCTGGCCTATAGTCATTCCCCACCATATAAG  638

seq1  AGCAAACAAAACAAAAGAACAAAAATAACAAGTGTACTCTTTTTCTTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACAAAACAAAAGAACAAAAATAACAAGTGTACTCTTTTTCTTTCC  688

seq1  TGTTTCTTGGAATACCCAAATTTACTATATTGTTAGTAGTATTTATTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGGAATACCCAAATTTACTATATTGTTAGTAGTATTTATTGCC  738

seq1  TGCAGTTTTTATCACAATTGGTCTGTAGTACAGCCTTAGGTCAGGCTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTTATCACAATTGGTCTGTAGTACAGCCTTAGGTCAGGCTTGG  788

seq1  TGATTCCACCAGAGGTCCTTTTATTCTTGAGGGAGTTTTTGCTATCTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCACCAGAGGTCCTTTTATTCTTGAGGGAGTTTTTGCTATCTTAG  838

seq1  GTTTTTTGTTATTCCAGATAAATTTGCAGATTGCCCTTTCTAATTCGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTATTCCAGATAAATTTGCAGATTGCCCTTTCTAATTCGTTG  888

seq1  AAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATTGC  938

seq1  TTTTGGCAAGTAAGGCAAAAGACACCATCAATAAGACAAAAAGGCAACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAAGTAAGGCAAAAGACACCATCAATAAGACAAAAAGGCAACCA  988

seq1  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAATAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAATAAT  1038

seq1  ATCCAATATATATAAAGAACACAAGAAGGTAGACTCCAGAAAATCAAATA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATATATATAAAGAACACAAGAAGGTAGACTCCAGAAAATCAAATA  1088

seq1  ACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATTAAAAATGGGGCTCAGAGCTAAACAAAGAATTC  1128