BAC Information

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BAC

Clone NameB6Ng01-240H24
Chromosome16 (Build37)
Map Location 45,632,089 - 45,633,258
singlet/doubletsinglet
Overlap geneBC016579
Upstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2
Downstream geneTmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240H24.bB6Ng01-240H24.g
ACCGA050656GA050657
length1,2081,205
definitionB6Ng01-240H24.b B6Ng01-240H24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcctttgtcctgaatccatttgcttccatgggtgctatgtaaga
tgatcctcagtgacatgtgtgttcttttcttgttgtgtgtttagctcacg
gacacgtatagacagtccccatctctgagtcgttttttcacttctgctga
tatcttggatttcaggtaagagctcagatctttacatcttgccatctttc
tcagaagatcacctactcacctacccagcttatctccattcacccccaat
gatctccctgagctttgcagcaggagaagacttgggagtaaaaaacacag
tgtcacgctgcagtggtgcagggcaacatcttagctcggaaaagcagaaa
gaaggaaatcgtggactaattatgtgattcaattatggtcaccctcagag
aggaaaagcatgtctatccaagagaaacatttctgtttaacaatagatac
agaaatcaattcagggcagaaataaacacaaatctcagagagggacatga
tttatgtgctgcagcggtgactcaggggtgactggcctcacacaacatta
cgaacataaaaaatgcacctgtctctcctgtctcctttctttagtgctac
caccaatgatgaataacactcacccctacaaaattaacaactctgcttgc
cttcatttttttgtctgtgcatatatttactatattcagtgtccatgtat
gtatacatacagtttttaaaaatatttttattaaatattttacatacagt
ttttttttaattttcaataaatttaatagtttgaaccagtcaaaagatac
acacattttgtgtgtgtgtctgtttgtgtaaaggaagtataagtagtaat
ttaataaatgatttctttttattactgagattactgaaaatactttaaat
aagatttatatgagaagcccttattgtcaattgttcctagggtgtcactg
gggaggtagtgatcaaagttaacattatatgttgtgattctccccacttt
aaatcaataataccagtagatccgaggagagggagcatgttagccatcag
gtggtaactttgattgaagaatagggaacaagaaagggacctgcagtttg
attgtgtcttcccttccttcagatgttctccttgcctggcccaatgggga
ccttactgttctttagtccataggatccactggcacacaaatattattgt
ggggtgta
gaattcaccatgtgaacaaactgaaggggaaaaaaaaccacccaataatc
tcatttgattctaaaaatggctttgacaaaacccaacaacctttcatgat
aaaagtcttgtagagatcagggatataagctgcattcctgaacacaataa
agccaatatatagcaagctgatagccaacatcaaattacatttaagttag
agaggaacttaaagcaaatccactaaaattgaggacaattcaaggctgtc
cactctctcatatctgttcaattcagtgattgcagttctagctagagcaa
taagacaactgaaggagatcgaggggataaaaattgcaaaggaagatgtc
tacatatctctattcacagatgatctgatagcatacataggtgactccta
taaaaaaattcactaatcttcctatataaaagtgactaacaggctgagaa
ataaattagggaagcaacaccctcaacaatagccgcaaataatatataat
atcttggtgtaactctaaccaagcaaacaaagggcctatatggaagaact
tcaaatttttgaagaaaaaaattaaagaggtcatatgaagatggaaagaa
ttcccctgcccatgaatctctaggattaacacagtaaaaactgccaaaac
tatacaatgggaaaaagaaagcatcttcagcaaattgtgctggtctaact
tgtcctacttctatatgtccaagaatgcatatatatgtatgtctatcatt
ctgcacaaaactcaagtccatgtggatcaaagatctgaacctaaaaccca
atgcactaaacatgatagaagagaaagtgaagaatactcttgaatgcact
ggcacagaagaccaattcccgaacataacacccaatatctcaggcactaa
gaataagaatcagtaagtggaatcctcataaaactgaaaagcttctgtaa
ggcaaaggacagtgacaaaaaggacaaaacggcagccctaatagggatga
agaaaagacccttgacaccccacatcaacaggagaagctgaatactcaaa
atatataaataactcaggaaactaggcatcagcaaacgaatacccatttt
tgaaatgttgtaaagatgtgcccaggatggttggaatccttagcgtcatg
gaattgccaagttaaccgaactcagaactcgggcataccacctgtatctc
agagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45632089_45633258
seq2: B6Ng01-240H24.b_43_1250 (reverse)

seq1  TACACCC-------ATATT--TGTGCCAGTG--ACTTAT-GACTAAAG-A  37
      |||||||       |||||  ||||||||||   | ||| |||||||| |
seq2  TACACCCCACAATAATATTTGTGTGCCAGTGGATCCTATGGACTAAAGAA  50

seq1  CAGTAGGGTCCCCATTGGGC--AGCAA-GAG-ACATCTGAAG--AAGGAA  81
      ||||| ||||||||||||||   |||| ||| ||||||||||  | ||||
seq2  CAGTAAGGTCCCCATTGGGCCAGGCAAGGAGAACATCTGAAGGAAGGGAA  100

seq1  GACAACATCAAACTTCAGGT-CCTTTCTTGT--CCTATCTCATC-----A  123
      ||||  |||||||| ||||| ||||||||||  ||||| || ||     |
seq2  GACACAATCAAACTGCAGGTCCCTTTCTTGTTCCCTAT-TCTTCAATCAA  149

seq1  AGTTACCA-CTGAT-GCT-ACATGCT-CCTCT-CTCGGATCTACTGGTAT  168
      |||||||| ||||| ||| ||||||| ||||| |||||||||||||||||
seq2  AGTTACCACCTGATGGCTAACATGCTCCCTCTCCTCGGATCTACTGGTAT  199

seq1  TA-TGATTT-AAGT-GGGAGAATCACAACATATAATGTTAACTTTGATCA  215
      || |||||| |||| |||||||||||||||||||||||||||||||||||
seq2  TATTGATTTAAAGTGGGGAGAATCACAACATATAATGTTAACTTTGATCA  249

seq1  CTACCT-CCCAGTGACACCCTAGGAACAATTGACAATAAGGCTTTCTCAT  264
      |||||| ||||||||||||||||||||||||||||||||||  |||||||
seq2  CTACCTCCCCAGTGACACCCTAGGAACAATTGACAATAAGGGCTTCTCAT  299

seq1  ATAAATCTTATTTAAAGTATTTTCAGTAATCTCAGTAATAAAAAG-AATC  313
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATAAATCTTATTTAAAGTATTTTCAGTAATCTCAGTAATAAAAAGAAATC  349

seq1  ATTTATTAAATTACTACTTATACTTCCTTTACACAAACAGACACACACAC  363
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAATTACTACTTATACTTCCTTTACACAAACAGACACACACAC  399

seq1  -AAATGTGTGTATCTTTTGACTGGTTCAAACTATTAAATTTATTG-AAAT  411
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAATGTGTGTATCTTTTGACTGGTTCAAACTATTAAATTTATTGAAAAT  449

seq1  TAAAAAAAAACTGTATGTAAAATATTTAATAAAAATATTTTTAAAAACTG  461
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAACTGTATGTAAAATATTTAATAAAAATATTTTTAAAAACTG  499

seq1  TATGTATACATACATGGACACTGAATATAGTAAATATATGCACAGACAAA  511
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACATACATGGACACTGAATATAGTAAATATATGCACAGACAAA  549

seq1  AAAATGAAGGCAAGCAGAGTTGTTAATTTTGTAGGGGTGAGTGTTATTCA  561
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGGCAAGCAGAGTTGTTAATTTTGTAGGGGTGAGTGTTATTCA  599

seq1  TCATTGGTGGTAGCACTAAAGAAAGGAGACAGGAGAGACAGGTGCATTTT  611
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTGGTAGCACTAAAGAAAGGAGACAGGAGAGACAGGTGCATTTT  649

seq1  TTATGTTCGTAATGTTGTGTGAGGCCAGTCACCCCTGAGTCACCGCTGCA  661
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCGTAATGTTGTGTGAGGCCAGTCACCCCTGAGTCACCGCTGCA  699

seq1  GCACATAAATCATGTCCCTCTCTGAGATTTGTGTTTATTTCTGCCCTGAA  711
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAAATCATGTCCCTCTCTGAGATTTGTGTTTATTTCTGCCCTGAA  749

seq1  TTGATTTCTGTATCTATTGTTAAACAGAAATGTTTCTCTTGGATAGACAT  761
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGTATCTATTGTTAAACAGAAATGTTTCTCTTGGATAGACAT  799

seq1  GCTTTTCCTCTCTGAGGGTGACCATAATTGAATCACATAATTAGTCCACG  811
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTCTCTGAGGGTGACCATAATTGAATCACATAATTAGTCCACG  849

seq1  ATTTCCTTCTTTCTGCTTTTCCGAGCTAAGATGTTGCCCTGCACCACTGC  861
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTCTTTCTGCTTTTCCGAGCTAAGATGTTGCCCTGCACCACTGC  899

seq1  AGCGTGACACTGTGTTTTTTACTCCCAAGTCTTCTCCTGCTGCAAAGCTC  911
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGACACTGTGTTTTTTACTCCCAAGTCTTCTCCTGCTGCAAAGCTC  949

seq1  AGGGAGATCATTGGGGGTGAATGGAGATAAGCTGGGTAGGTGAGTAGGTG  961
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATCATTGGGGGTGAATGGAGATAAGCTGGGTAGGTGAGTAGGTG  999

seq1  ATCTTCTGAGAAAGATGGCAAGATGTAAAGATCTGAGCTCTTACCTGAAA  1011
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGAGAAAGATGGCAAGATGTAAAGATCTGAGCTCTTACCTGAAA  1049

seq1  TCCAAGATATCAGCAGAAGTGAAAAAACGACTCAGAGATGGGGACTGTCT  1061
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATATCAGCAGAAGTGAAAAAACGACTCAGAGATGGGGACTGTCT  1099

seq1  ATACGTGTCCGTGAGCTAAACACACAACAAGAAAAGAACACACATGTCAC  1111
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTGTCCGTGAGCTAAACACACAACAAGAAAAGAACACACATGTCAC  1149

seq1  TGAGGATCATCTTACATAGCACCCATGGAAGCAAATGGATTCAGGACAAA  1161
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCATCTTACATAGCACCCATGGAAGCAAATGGATTCAGGACAAA  1199

seq1  GGAGAATTC  1170
      |||||||||
seq2  GGAGAATTC  1208