BAC Information

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BAC

Clone NameB6Ng01-240I04
Chromosome16 (Build37)
Map Location 56,321,083 - 56,377,819
singlet/doubletdoublet
Overlap geneLOC672835
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2
Downstream geneAbi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240I04.bB6Ng01-240I04.g
ACCGA050661GA050662
length1,1471,077
definitionB6Ng01-240I04.b B6Ng01-240I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,321,083 - 56,322,239)(56,376,735 - 56,377,819)
sequence
gaattccaaggtctcctttcagcatgagttaaacactaccttgtattgat
ttgctaggactgccataataaaatgccatggagaggaaggctattttcct
cctagttctggagtctgggagtccatgattgatgtgtcaacatttacagg
atctgcaaggccattcttagctcagaggctgccatcttcatagagctagg
gacttatggtctcatttagcttttgttaatactcttaaagcgctgtatcc
aaatatagtcacaaaaaataagagtttcaacacactatcttgggaggaga
cactgctcaagctatgccagcccccaaaccttgttgtttctgtgaaaaat
ggaatacgactcagaaatcattttttttaaaaagtatatttttatttatt
ccattagaatttcatacatgaatatgattcacccttactcctcttccact
acatctgtttttttgttttgttttgttttggtttggttttttttttggtt
ttttcaagacagggtttctctgtatagccctggctgtcctggaactcact
ttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgccttc
cgagtgctgggattaaaggcatgcaccaccacacttggctactacatctg
tattttattaaatgttgccagattgcctgtacaaaccttgcaaggataca
tttgaattgatttttcactatttaccttcaacccaagtttcaggaaccaa
atatctactcattttttttcttagattttcaattgtccccaagaaggtgg
atctgtccttatggtagatgatgattcaggaggagccaaagatgcctgct
tccagcccaacgttgaagcaccagctgccatagaccaccccaaccgggta
tggggctccctgggatgtgggttctcaaggccaggtgggtaaggatttgg
atgctctaggtcacttcagtcttgttctccaggaccacaggtgtcttcta
cttggctgcacctgctttctaaacgatctgaaaacatctatcaacatgct
cactccttgctctctcagatgtgctctcagtctccagtctcagtctagaa
gtcctgcagtctggctcaggcaataaccttgctagcagaatgtaggt
gaattctgtgtgtctctatctcctgcatatttctagtccctggtgtttct
attagaagggaaagagacttttgttgccaagtttgtttttctctctccta
aactctaatgtttcattctagcttttccaaaattatgtttctgaagcatc
aggaatgaactgttaaattggcagaaaattgccaaagaaattaaaacaaa
acaaaacaaaaggcttagtgtccatagtcatttggataaggggtgtgtat
cccaagcctgcttgtacctgttcactttctctctctcgggatcctaagga
tattatttcaatgtactaagctgttttcctgtgttaaccacagaatttaa
tccaaactgcaagctaacaaatgagagattttggggggttaaggccgaga
atgacctctctggttttcttttacatggtcattcagtgggtacttgagtt
ctcctgggtggtgggcatcgtgctaagtgccagttgcataccagcattta
gagtgtgagattcacatgtggccaacgagcttctacccacatgtctctag
tccagcttgtgcttccctgctcctactttgggccagagctgagtaaacca
ctaacctactgcattcttgacaatgctggctctgaagtgctcagcaacct
ttgaacctagacccacgataaggcactgctgtaaggacatgcctttggga
cagaaccagtcttgctgaccaaggtgccagccaacttttcaagatcacac
ctttggttcttaagtaacacagggccatccggtaagatgtcttaagggag
actgacttgccagactccaactttcctagggacttgtctctccatttagt
gatatccaacaaatgtattgttgccttcagagtaaaatataaaagccaaa
attctggggtgggttttcttctcccttgtattttcactccttgaggtgcc
atgctcacagtctttcagtgttcggaatttggggatctacctatttatat
ctacgaaaggaaatatggcacatttttattcttagacagatcctgatctc
tgagagcagattcttcagtcatgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_56321083_56322239
seq2: B6Ng01-240I04.b_43_1189

seq1  GAATTCCAAGGTCTCCTTTCAGCATGAGTTAAACACTACCTTGTATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTCTCCTTTCAGCATGAGTTAAACACTACCTTGTATTGAT  50

seq1  TTGCTAGGACTGCCATAATAAAATGCCATGGAGAGGAAGGCTATTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGGACTGCCATAATAAAATGCCATGGAGAGGAAGGCTATTTTCCT  100

seq1  CCTAGTTCTGGAGTCTGGGAGTCCATGATTGATGTGTCAACATTTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTCTGGAGTCTGGGAGTCCATGATTGATGTGTCAACATTTACAGG  150

seq1  ATCTGCAAGGCCATTCTTAGCTCAGAGGCTGCCATCTTCATAGAGCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAGGCCATTCTTAGCTCAGAGGCTGCCATCTTCATAGAGCTAGG  200

seq1  GACTTATGGTCTCATTTAGCTTTTGTTAATACTCTTAAAGCGCTGTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATGGTCTCATTTAGCTTTTGTTAATACTCTTAAAGCGCTGTATCC  250

seq1  AAATATAGTCACAAAAAATAAGAGTTTCAACACACTATCTTGGGAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGTCACAAAAAATAAGAGTTTCAACACACTATCTTGGGAGGAGA  300

seq1  CACTGCTCAAGCTATGCCAGCCCCCAAACCTTGTTGTTTCTGTGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCAAGCTATGCCAGCCCCCAAACCTTGTTGTTTCTGTGAAAAAT  350

seq1  GGAATACGACTCAGAAATCATTTTTTTTAAAAAGTATATTTTTATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACGACTCAGAAATCATTTTTTTTAAAAAGTATATTTTTATTTATT  400

seq1  CCATTAGAATTTCATACATGAATATGATTCACCCTTACTCCTCTTCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGAATTTCATACATGAATATGATTCACCCTTACTCCTCTTCCACT  450

seq1  ACATCTGTTTTTTTGTTTTGTTTTGTTTTGGTTTGGTTTTTTTTTTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTTTTTTTGTTTTGTTTTGTTTTGGTTTGGTTTTTTTTTTGGTT  500

seq1  TTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACT  550

seq1  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTTC  600

seq1  CGAGTGCTGGGATTAAAGGCATGCACCACCACACTTGGCTACTACATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGCATGCACCACCACACTTGGCTACTACATCTG  650

seq1  TATTTTATTAAATGTTGCCAGATTGCCTGTACAAACCTTGCAAGGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTAAATGTTGCCAGATTGCCTGTACAAACCTTGCAAGGATACA  700

seq1  TTTGAATTGATTTTTCACTATTTACCTTCAACCCAAGTTTCAGGAACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGATTTTTCACTATTTACCTTCAACCCAAGTTTCAGGAACCAA  750

seq1  ATATCTACTCATTTTTTTTCTTAGATTTTCAATTGTCCCCAAGAAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACTCATTTTTTTTCTTAGATTTTCAATTGTCCCCAAGAAGGTGG  800

seq1  ATCTGTCCTTATGGTAGATGATGATTCAGGAGGAGCCAAAGATGCCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTTATGGTAGATGATGATTCAGGAGGAGCCAAAGATGCCTGCT  850

seq1  TCCAGCCCAACGTTGAAGCACCAGCTGCCATAGACCACCCCAACCGGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCAACGTTGAAGCACCAGCTGCCATAGACCACCCCAACCGGGTA  900

seq1  TGGGGCTCCCTGGGATGTGGGTTCTCAAGGCCAGGTGGGTAAGGATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGGGCTCCCTGGGATGTGGGTTCTCAAGGCCAGGTGGGTAAGGA-TTTG  949

seq1  GATGCTCTAGGTCACTTCAGTCTTGTTCTCCAGGA-CACAGGGTGTCTTC  999
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  GATGCTCTAGGTCACTTCAGTCTTGTTCTCCAGGACCACA-GGTGTCTTC  998

seq1  TACTTGGCTGCACCTGCTTTCTAAACGATCTGAAAACATCCTATCAACAT  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACTTGGCTGCACCTGCTTTCTAAACGATCTGAAAACAT-CTATCAACAT  1047

seq1  GCTCACT-CTTGCTTCTCTCAGGATTGTGCTTCTTCAGTCTTCAGTCTTC  1098
      ||||||| ||||| ||||||||   ||||||   ||||||| ||||| ||
seq2  GCTCACTCCTTGC-TCTCTCAG--ATGTGCT--CTCAGTCTCCAGTC-TC  1091

seq1  AGTCTTAGAAGGTCCCTGCAGTCCTGCCCTCAGGC-ATAACTTTGCTGGC  1147
      |||| ||||||   |||||||||  |  ||||||| ||||| ||||| ||
seq2  AGTC-TAGAAG--TCCTGCAGTCTGG--CTCAGGCAATAACCTTGCTAGC  1136

seq1  AG-ATGTAGGT  1157
      || ||||||||
seq2  AGAATGTAGGT  1147

seq1: chr16_56376735_56377819
seq2: B6Ng01-240I04.g_65_1141 (reverse)

seq1  ATATCATGGAACTTGAAGAATTCTGCTTCTCAGAGATTCAGGATCTTGTC  50
      ||||||||  || ||||||| ||||| ||||||||| |||||||| ||||
seq2  ATATCATG--AC-TGAAGAA-TCTGC-TCTCAGAGA-TCAGGATC-TGTC  43

seq1  TAAGAAT-AAAATGTGCCATTATTTTCCTTTCCTTAGATATAAATAGGTA  99
      ||||||| ||||||||||||   |||||||| | ||||||||||||||||
seq2  TAAGAATAAAAATGTGCCAT--ATTTCCTTT-CGTAGATATAAATAGGTA  90

seq1  GATCCCCAAATTCCGAACACTGAAAGACTGTGAGCATGGCACCTCAAGGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCAAATTCCGAACACTGAAAGACTGTGAGCATGGCACCTCAAGGA  140

seq1  GTGAAAATACAAGGGAGAAGAAAA-CCACCCCAGAATTTTGGCTTTTATA  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGAAAATACAAGGGAGAAGAAAACCCACCCCAGAATTTTGGCTTTTATA  190

seq1  TTTTACTCTGAAGGCAACAATACATTTGTTGGATATCACTAAATGGAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTGAAGGCAACAATACATTTGTTGGATATCACTAAATGGAGAG  240

seq1  ACAAGTCCCTAGGAAAGTTGGAGTCTGGCAAGTCAGTCTCCCTTAAGACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCCTAGGAAAGTTGGAGTCTGGCAAGTCAGTCTCCCTTAAGACA  290

seq1  TCTTACCGGATGGCCCTGTGTTACTTAAGAACCAAAGGTGTGATCTTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCGGATGGCCCTGTGTTACTTAAGAACCAAAGGTGTGATCTTGAA  340

seq1  AAGTTGGCTGGCACCTTGGTCAGCAAGACTGGTTCTGTCCCAAAGGCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCTGGCACCTTGGTCAGCAAGACTGGTTCTGTCCCAAAGGCATG  390

seq1  TCCTTACAGCAGTGCCTTATCGTGGGTCTAGGTTCAAAGGTTGCTGAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAGCAGTGCCTTATCGTGGGTCTAGGTTCAAAGGTTGCTGAGCA  440

seq1  CTTCAGAGCCAGCATTGTCAAGAATGCAGTAGGTTAGTGGTTTACTCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGCCAGCATTGTCAAGAATGCAGTAGGTTAGTGGTTTACTCAGC  490

seq1  TCTGGCCCAAAGTAGGAGCAGGGAAGCACAAGCTGGACTAGAGACATGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCAAAGTAGGAGCAGGGAAGCACAAGCTGGACTAGAGACATGTG  540

seq1  GGTAGAAGCTCGTTGGCCACATGTGAATCTCACACTCTAAATGCTGGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGCTCGTTGGCCACATGTGAATCTCACACTCTAAATGCTGGTAT  590

seq1  GCAACTGGCACTTAGCACGATGCCCACCACCCAGGAGAACTCAAGTACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGCACTTAGCACGATGCCCACCACCCAGGAGAACTCAAGTACCC  640

seq1  ACTGAATGACCATGTAAAAGAAAACCAGAGAGGTCATTCTCGGCCTTAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATGACCATGTAAAAGAAAACCAGAGAGGTCATTCTCGGCCTTAAC  690

seq1  CCCCCAAAATCTCTCATTTGTTAGCTTGCAGTTTGGATTAAATTCTGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAATCTCTCATTTGTTAGCTTGCAGTTTGGATTAAATTCTGTGG  740

seq1  TTAACACAGGAAAACAGCTTAGTACATTGAAATAATATCCTTAGGATCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGGAAAACAGCTTAGTACATTGAAATAATATCCTTAGGATCCC  790

seq1  GAGAGAGAGAAAGTGAACAGGTACAAGCAGGCTTGGGATACACACCCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAAGTGAACAGGTACAAGCAGGCTTGGGATACACACCCCTT  840

seq1  ATCCAAATGACTATGGACACTAAGCCTTTTGTTTTGTTTTGTTTTAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATGACTATGGACACTAAGCCTTTTGTTTTGTTTTGTTTTAATTT  890

seq1  CTTTGGCAATTTTCTGCCAATTTAACAGTTCATTCCTGATGCTTCAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAATTTTCTGCCAATTTAACAGTTCATTCCTGATGCTTCAGAAA  940

seq1  CATAATTTTGGAAAAGCTAGAATGAAACATTAGAGTTTAGGAGAGAGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTGGAAAAGCTAGAATGAAACATTAGAGTTTAGGAGAGAGAAA  990

seq1  AACAAACTTGGCAACAAAAGTCTCTTTCCCTTCTAATAGAAACACCAGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTTGGCAACAAAAGTCTCTTTCCCTTCTAATAGAAACACCAGGG  1040

seq1  ACTAGAAATATGCAGGAGATAGAGACACACAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAATATGCAGGAGATAGAGACACACAGAATTC  1077