BAC Information

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BAC

Clone NameB6Ng01-241E15
Chromosome16 (Build37)
Map Location 81,997,441 - 82,140,124
singlet/doubletdoublet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241E15.bB6Ng01-241E15.g
ACCGA051245GA051246
length8381,035
definitionB6Ng01-241E15.b B6Ng01-241E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,139,556 - 82,140,124)(81,997,441 - 81,998,489)
sequence
gaattcattttaattccaaaccactgataattttactgtactttcaacta
ttactttcattgaaaattatatcgggtattgggtgggggaaatggattga
aatccttaagggccagcagagaaagggaaaaatgcagcctggagggtagc
agattggggggactctccagaatgtaccagagacctgggagttgaaagac
gctcaggactcaacgagaggcaccgaatatgaaatgtcctacatcaggga
gagggaacttgtagagctcacatccagcagaaagacagggcatcaagtga
gggatggggttgccatcccacagtcaaaactctgacccataattgttcct
gtctgaaacaattacagggatggagatggagagaagcctgaggaaaagaa
ggcccagcaataggccaatagtgggatccagctcaaggggagaccccaag
gcctgacactattactgaggctgtggaatgctcacaaaaagggacatagc
atgaacggcctctgaaagacccaacaagcagctgaaagagtcagatataa
atatttgcacccaaccaaatggacagaagctgctggcccctgtcgtctaa
ttaaagaaaggttgacagaagctgagaaggagggcgaccctgtacgagga
ccagcagtttcaattaaactggacccctgagatctctcaaacactggacc
accaaacaagcaacatatacgagctgatatgaggctcccaaaacacatac
agtagaagactttctggtctgttcattcagaaatgatgcacctaaccctc
accagactgggacgccccaagaaagattagaggaaagg
gaattcccagtagttgtccatagatgtattgacactgatggtaaaaactt
atagatgtatgacttgtttctaattgtcactgagattaaatagcagtatt
gttctttactgtgtagaggcaccaagggtgaagggtcacaagataattct
gcttgtcttaagacctatagtatttgaagagtaaatgaagaaaatatctt
actaaaagaaataaaaataaaaaagggataaacagggtgtagtcatgtaa
gttaaatacatgcttataactatttctcacaaaacagaaattagcacaac
atatccattgaagatataagtcagacacaaaaaaaatttcaattagtgta
aattagtattgtgttaattgaaatttttgtccaatgattgattataacta
gttgccagaagcatttggacaggcaacaacaacatgttggcaaatctaat
tcacagttggcatctacagaagttggattggctttcctcacagacctgtt
agtcgatgagaaaaagaaggatgtataaaacaaattacattcctggaact
atttagttagcgccctccttcttaacactgatcttgaatttgtgccatgg
aagacatttgtaacttgtgtgttgatgaactgtaagagagactggcaaac
atgcatatagcactaaggaatgcatcgtgccattttctttacaaggtaga
aacaaggtgagtgggtgatttcaccattttcagatttattgttaaattca
aaatgaaaaaatgtaacatagtttaagactcatgacccacatgtgctctg
tccatatttatttttggttttcttgactttcgctctacctcacttccatt
gtgtatggattcatgagatgctgtgcataaaatgcttccatacagcttat
tcacaacatatactctctgtccaattaattggcaggtgaagactagtaat
tgttagtattccaaattatctcattcctgacacatagtttatgtatgtgt
ctatgacttgatatattgtatataataaataaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_82139556_82140124
seq2: B6Ng01-241E15.b_42_610 (reverse)

seq1  TTTGGTTGGGTGCAAATATTTATATCTGACTCTTTCAGCTGCTTGTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGGGTGCAAATATTTATATCTGACTCTTTCAGCTGCTTGTTGGG  50

seq1  TCTTTCAGAGGCCGTTCATGCTATGTCCCTTTTTGTGAGCATTCCACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGAGGCCGTTCATGCTATGTCCCTTTTTGTGAGCATTCCACAGC  100

seq1  CTCAGTAATAGTGTCAGGCCTTGGGGTCTCCCCTTGAGCTGGATCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAATAGTGTCAGGCCTTGGGGTCTCCCCTTGAGCTGGATCCCACT  150

seq1  ATTGGCCTATTGCTGGGCCTTCTTTTCCTCAGGCTTCTCTCCATCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCTATTGCTGGGCCTTCTTTTCCTCAGGCTTCTCTCCATCTCCAT  200

seq1  CCCTGTAATTGTTTCAGACAGGAACAATTATGGGTCAGAGTTTTGACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAATTGTTTCAGACAGGAACAATTATGGGTCAGAGTTTTGACTGT  250

seq1  GGGATGGCAACCCCATCCCTCACTTGATGCCCTGTCTTTCTGCTGGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCAACCCCATCCCTCACTTGATGCCCTGTCTTTCTGCTGGATGT  300

seq1  GAGCTCTACAAGTTCCCTCTCCCTGATGTAGGACATTTCATATTCGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTACAAGTTCCCTCTCCCTGATGTAGGACATTTCATATTCGGTGC  350

seq1  CTCTCGTTGAGTCCTGAGCGTCTTTCAACTCCCAGGTCTCTGGTACATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGTTGAGTCCTGAGCGTCTTTCAACTCCCAGGTCTCTGGTACATTC  400

seq1  TGGAGAGTCCCCCCAATCTGCTACCCTCCAGGCTGCATTTTTCCCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTCCCCCCAATCTGCTACCCTCCAGGCTGCATTTTTCCCTTTCT  450

seq1  CTGCTGGCCCTTAAGGATTTCAATCCATTTCCCCCACCCAATACCCGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCCCTTAAGGATTTCAATCCATTTCCCCCACCCAATACCCGATA  500

seq1  TAATTTTCAATGAAAGTAATAGTTGAAAGTACAGTAAAATTATCAGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAATGAAAGTAATAGTTGAAAGTACAGTAAAATTATCAGTGGT  550

seq1  TTGGAATTAAAATGAATTC  569
      |||||||||||||||||||
seq2  TTGGAATTAAAATGAATTC  569

seq1: chr16_81997441_81998489
seq2: B6Ng01-241E15.g_63_1097

seq1  GAATTCCCAGTAGTTGTCCATAGATGTATTGACACTGATGGTAAAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTAGTTGTCCATAGATGTATTGACACTGATGGTAAAAACTT  50

seq1  ATAGATGTATGACTTGTTTCTAATTGTCACTGAGATTAAATAGCAGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTATGACTTGTTTCTAATTGTCACTGAGATTAAATAGCAGTATT  100

seq1  GTTCTTTACTGTGTAGAGGCACCAAGGGTGAAGGGTCACAAGATAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTACTGTGTAGAGGCACCAAGGGTGAAGGGTCACAAGATAATTCT  150

seq1  GCTTGTCTTAAGACCTATAGTATTTGAAGAGTAAATGAAGAAAATATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTAAGACCTATAGTATTTGAAGAGTAAATGAAGAAAATATCTT  200

seq1  ACTAAAAGAAATAAAAATAAAAAAGGGATAAACAGGGTGTAGTCATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGAAATAAAAATAAAAAAGGGATAAACAGGGTGTAGTCATGTAA  250

seq1  GTTAAATACATGCTTATAACTATTTCTCACAAAACAGAAATTAGCACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATACATGCTTATAACTATTTCTCACAAAACAGAAATTAGCACAAC  300

seq1  ATATCCATTGAAGATATAAGTCAGACACAAAAAAAATTTCAATTAGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATTGAAGATATAAGTCAGACACAAAAAAAATTTCAATTAGTGTA  350

seq1  AATTAGTATTGTGTTAATTGAAATTTTTGTCCAATGATTGATTATAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTATTGTGTTAATTGAAATTTTTGTCCAATGATTGATTATAACTA  400

seq1  GTTGCCAGAAGCATTTGGACAGGCAACAACAACATGTTGGCAAATCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCAGAAGCATTTGGACAGGCAACAACAACATGTTGGCAAATCTAAT  450

seq1  TCACAGTTGGCATCTACAGAAGTTGGATTGGCTTTCCTCACAGACCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGGCATCTACAGAAGTTGGATTGGCTTTCCTCACAGACCTGTT  500

seq1  AGTCGATGAGAAAAAGAAGGATGTATAAAACAAATTACATTCCTGGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGATGAGAAAAAGAAGGATGTATAAAACAAATTACATTCCTGGAACT  550

seq1  ATTTAGTTAGCGCCCTCCTTCTTAACACTGATCTTGAATTTGTGCCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTAGCGCCCTCCTTCTTAACACTGATCTTGAATTTGTGCCATGG  600

seq1  AAGACATTTGTAACTTGTGTGTTGATGAACTGTAAGAGAGACTGGCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTGTAACTTGTGTGTTGATGAACTGTAAGAGAGACTGGCAAAC  650

seq1  ATGCATATAGCACTAAGGAATGCATCGTGCCATTTTCTTTACAAGGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATAGCACTAAGGAATGCATCGTGCCATTTTCTTTACAAGGTAGA  700

seq1  AACAAGGTGAGTGGGTGATTTCACCATTTTCAGATTTATTGTTAAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGAGTGGGTGATTTCACCATTTTCAGATTTATTGTTAAATTCA  750

seq1  AAATGAAAAAATGTAACATAGTTTAAGACTCATGACCCACATGTGCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAAATGTAACATAGTTTAAGACTCATGACCCACATGTGCTCTG  800

seq1  TCCATATTTATTTTTGGTTTTCTTGACTTTCGCTCTACCTCACTTCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTATTTTTGGTTTTCTTGACTTTCGCTCTACCTCACTTCCATT  850

seq1  GTGTATGGATTCATGAGATGCTGTGCATAAAATGCTTCCATACAGCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGATTCATGAGATGCTGTGCATAAAATGCTTCCATACAGCTTAT  900

seq1  TCACAACATATACTCTCTGTCCAAATTAATTGGCAAGGTGAAGACTAGTA  950
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TCACAACATATACTCTCTGTCC-AATTAATTGGC-AGGTGAAGACTAGTA  948

seq1  ATTGTTTAGTATTCCCAAATTTATTCTTCATTCCTTGACACATAGTTTTA  1000
      |||| ||||||||||  || ||||   ||||||| |||||||||||||  
seq2  ATTG-TTAGTATTCC--AAATTAT--CTCATTCC-TGACACATAGTTT--  990

seq1  ATGGTATGTGTTCTATTGAATTTATATATTGTATATTAATAAATAAACT  1049
      || ||||||| |||| ||| || |||||||||||| |||||||||||||
seq2  AT-GTATGTG-TCTA-TGACTTGATATATTGTATA-TAATAAATAAACT  1035