BAC Information

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BAC

Clone NameB6Ng01-242M06
Chromosome16 (Build37)
Map Location 81,838,725 - 81,931,584
singlet/doubletdoublet
Overlap geneLOC435484, Pgk1-ps1
Upstream geneLOC100039724, Ncam2, LOC621470
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242M06.bB6Ng01-242M06.g
ACCGA052323GA052324
length1,144992
definitionB6Ng01-242M06.b B6Ng01-242M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,838,725 - 81,839,881)(81,931,051 - 81,931,584)
sequence
gaattctaatttgcaccagtgtagcacggctgtatcctgagagtgaggtt
ggaaggattagggaacaaatcaatgtggcctagtttatatcaggtgatgt
tcctctgcttctctagtttctcagaatcaaagcctgtccttatttttatt
tctctcttaaagctgttatgcagaatataaaattctatttcaaatttagg
attcattttgtcaccctcaccaatacatctcagctctcaactgcaaatgg
ataaattgatgtgtgtttgagtgtcctgccctatgccatcaagtcagtat
gaatataatttagtacataagaaaagacagatggcggactctgacaggga
cataatcagcactgagcccttttggctttgcaaaatgtgagaaaccattt
gtaatttagttaacatttgaaaagaagctactgagtctgtatagtggcaa
agtgaaggatatgacaaggttttcaaacaaacactgttctttaaaaagca
gaattgagtatggcagggatagaatatctaggaaactctgttacaatgta
acccaagggtggtgagttaatttttattcttagaaataaattttcttcca
gtttctggacattattactgttactttgttttctgtttttgttgttttag
ttagttttccttctgtttcacatagcttaaccttggtcattgggtctatt
cccatcaaaactgacttattgcaacacactttcaaacaacctttccctct
tgcaatgaactaataaatttgctttggttgtacaaatcctacaggaaaag
gttaaagttatattgttcattcatctgtttggattctgcattctcacttt
agagaatagtcaacaaagacacaaaatgccgtttctctattgctgtactc
tccgtgataccatcacaatgctgatactgagataagcatttaccaagttt
gtggctagatcaacacatgaaaaataaaataagaggctcctttaaagtgt
ggactcatttgacactgagtgagattgtaaggaataaatgattgtttgca
cttttgataggaaagatttgatagcatttgctaaaagaaggtatagtaga
cggatgttctggaatatgaactagaatgagttcgaataaaatac

gaattcattctttttctttttttttttccttcgataatttgttttttatt
cattttacatagcgatctcaacccctcctgccactcctcccggttttgcc
cttacaaatccctcccttcattacccactttccttctcctcagagaccgg
aagcccaccttggggcatctaattccagcagaagaaagcacatcctcttc
cactgaggttgaactaggcagtccaactacagcaaggggatgtaatgtca
ggcaaaagaatcagagacagtctctgcttctaatgttagggcactcacat
gaagaccaagcagcacatatgctacaaatgtgtctatgggggtgtaggtt
ctgggttgccaagctcgggtactagtcattatgaatgctctttgattggt
ggttcagtctctgtgagccctcatgtgttcaggttagttgactctgtatg
tcttcttgtgttgaccttgattcctcctgtttgcttatttctatccttga
ctcttctatgagaatccaggatctctgactggtgtttggctgtgggtctc
tgcaactgtttccatcagctattggatgaagcctctcaggaggcagttat
gctaagttcctgtctgcaaacatcagacaggagagtatcattaatagtgt
ccggagttggctttttctcatgggatatgtttcaagttgggccagtcatt
ggttcaagattctctcagactcagctgcataattactcctgaagatcata
taggcaggacaaattttggatttaacgttttgtgagtggggttgagtccc
ctccctccatcataagtccagcctgactatggtagatggccactgaattc
tctatatctcctgctgttagaaaactattaataaaacttatacctataat
tattggtttattcctaaactataaatagcaaagtaggaccacattccaaa
atatgatgaaagatataaggatatgtaaaagtattttctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81838725_81839881
seq2: B6Ng01-242M06.b_47_1190

seq1  GAATTCTAATTTGCACCAGTGTAGCACGGCTGTATCCTGAGAGTGAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTTGCACCAGTGTAGCACGGCTGTATCCTGAGAGTGAGGTT  50

seq1  GGAAGGATTAGGGAACAAATCAATGTGGCCTAGTTTATATCAGGTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATTAGGGAACAAATCAATGTGGCCTAGTTTATATCAGGTGATGT  100

seq1  TCCTCTGCTTCTCTAGTTTCTCAGAATCAAAGCCTGTCCTTATTTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCTTCTCTAGTTTCTCAGAATCAAAGCCTGTCCTTATTTTTATT  150

seq1  TCTCTCTTAAAGCTGTTATGCAGAATATAAAATTCTATTTCAAATTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTAAAGCTGTTATGCAGAATATAAAATTCTATTTCAAATTTAGG  200

seq1  ATTCATTTTGTCACCCTCACCAATACATCTCAGCTCTCAACTGCAAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTGTCACCCTCACCAATACATCTCAGCTCTCAACTGCAAATGG  250

seq1  ATAAATTGATGTGTGTTTGAGTGTCCTGCCCTATGCCATCAAGTCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGATGTGTGTTTGAGTGTCCTGCCCTATGCCATCAAGTCAGTAT  300

seq1  GAATATAATTTAGTACATAAGAAAAGACAGATGGCGGACTCTGACAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATTTAGTACATAAGAAAAGACAGATGGCGGACTCTGACAGGGA  350

seq1  CATAATCAGCACTGAGCCCTTTTGGCTTTGCAAAATGTGAGAAACCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCAGCACTGAGCCCTTTTGGCTTTGCAAAATGTGAGAAACCATTT  400

seq1  GTAATTTAGTTAACATTTGAAAAGAAGCTACTGAGTCTGTATAGTGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTAGTTAACATTTGAAAAGAAGCTACTGAGTCTGTATAGTGGCAA  450

seq1  AGTGAAGGATATGACAAGGTTTTCAAACAAACACTGTTCTTTAAAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGATATGACAAGGTTTTCAAACAAACACTGTTCTTTAAAAAGCA  500

seq1  GAATTGAGTATGGCAGGGATAGAATATCTAGGAAACTCTGTTACAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAGTATGGCAGGGATAGAATATCTAGGAAACTCTGTTACAATGTA  550

seq1  ACCCAAGGGTGGTGAGTTAATTTTTATTCTTAGAAATAAATTTTCTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGGTGGTGAGTTAATTTTTATTCTTAGAAATAAATTTTCTTCCA  600

seq1  GTTTCTGGACATTATTACTGTTACTTTGTTTTCTGTTTTTGTTGTTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGACATTATTACTGTTACTTTGTTTTCTGTTTTTGTTGTTTTAG  650

seq1  TTAGTTTTCCTTCTGTTTCACATAGCTTAACCTTGGTCATTGGGTCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCTTCTGTTTCACATAGCTTAACCTTGGTCATTGGGTCTATT  700

seq1  CCCATCAAAACTGACTTATTGCAACACACTTTCAAACAACCTTTCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAAAACTGACTTATTGCAACACACTTTCAAACAACCTTTCCCTCT  750

seq1  TGCAATGAACTAATAAATTTGCTTTGGTTGTACAAATCCTACAGGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAACTAATAAATTTGCTTTGGTTGTACAAATCCTACAGGAAAAG  800

seq1  GTTAAAGTTATATTGTTCATTCATCTGTTTGGATTCTGCATTCTCACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTATATTGTTCATTCATCTGTTTGGATTCTGCATTCTCACTTT  850

seq1  AGAGAATAGTCAACAAAGACACAAAATGCCGTTTCTCTATTGCTGTACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGTCAACAAAGACACAAAATGCCGTTTCTCTATTGCTGTACTC  900

seq1  TCCGTGATACCATCACAATGCTGATACTGAGATAAGCATTTACCAAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGATACCATCACAATGCTGATACTGAGATAAGCATTTACCAAGTTT  950

seq1  GTGGCTAGATCAACACATG-AAAATAAAATAAGAGGCTCC-TTAAAGTGT  998
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  GTGGCTAGATCAACACATGAAAAATAAAATAAGAGGCTCCTTTAAAGTGT  1000

seq1  GGACTCATTTTGACAACTGAGTGAGATTGTTAAGGAATAAATGATTTGTT  1048
      ||||||| |||||| |||||||||||||| ||||||||||||||||   |
seq2  GGACTCA-TTTGAC-ACTGAGTGAGATTG-TAAGGAATAAATGATT--GT  1045

seq1  TTGCACTTTTTGAATAGGGAAAGAATTTGATAGGCATTTGCTTAAAAGAA  1098
      ||||||||||   ||| |||||| |||||||| |||||||| |||||| |
seq2  TTGCACTTTT--GATA-GGAAAG-ATTTGATA-GCATTTGC-TAAAAG-A  1088

seq1  AGTTATAAGTAGACAGATGTTCTGGAAATTATG-ACTAGAATAGAAGTTA  1147
      || ||| ||||||| ||||||||||||  |||| ||||||||   |||| 
seq2  AGGTAT-AGTAGACGGATGTTCTGGAA--TATGAACTAGAAT--GAGTTC  1133

seq1  G-ATAAAATAC  1157
      | |||||||||
seq2  GAATAAAATAC  1144


seq1: chr16_81931051_81931584
seq2: B6Ng01-242M06.g_67_600 (reverse)

seq1  CACCAGTCAGAGATCCTGGATTCTCATAGAAGAGTCAAGGATAGAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCAGAGATCCTGGATTCTCATAGAAGAGTCAAGGATAGAAATAA  50

seq1  GCAAACAGGAGGAATCAAGGTCAACACAAGAAGACATACAGAGTCAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGGAGGAATCAAGGTCAACACAAGAAGACATACAGAGTCAACTA  100

seq1  ACCTGAACACATGAGGGCTCACAGAGACTGAACCACCAATCAAAGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAACACATGAGGGCTCACAGAGACTGAACCACCAATCAAAGAGCAT  150

seq1  TCATAATGACTAGTACCCGAGCTTGGCAACCCAGAACCTACACCCCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGACTAGTACCCGAGCTTGGCAACCCAGAACCTACACCCCCATA  200

seq1  GACACATTTGTAGCATATGTGCTGCTTGGTCTTCATGTGAGTGCCCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTTGTAGCATATGTGCTGCTTGGTCTTCATGTGAGTGCCCTAAC  250

seq1  ATTAGAAGCAGAGACTGTCTCTGATTCTTTTGCCTGACATTACATCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGCAGAGACTGTCTCTGATTCTTTTGCCTGACATTACATCCCCT  300

seq1  TGCTGTAGTTGGACTGCCTAGTTCAACCTCAGTGGAAGAGGATGTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGTTGGACTGCCTAGTTCAACCTCAGTGGAAGAGGATGTGCTTT  350

seq1  CTTCTGCTGGAATTAGATGCCCCAAGGTGGGCTTCCGGTCTCTGAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGGAATTAGATGCCCCAAGGTGGGCTTCCGGTCTCTGAGGAGA  400

seq1  AGGAAAGTGGGTAATGAAGGGAGGGATTTGTAAGGGCAAAACCGGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTGGGTAATGAAGGGAGGGATTTGTAAGGGCAAAACCGGGAGGA  450

seq1  GTGGCAGGAGGGGTTGAGATCGCTATGTAAAATGAATAAAAAACAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGAGGGGTTGAGATCGCTATGTAAAATGAATAAAAAACAAATTA  500

seq1  TCGAAGGAAAAAAAAAAAGAAAAAGAATGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TCGAAGGAAAAAAAAAAAGAAAAAGAATGAATTC  534


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