BAC Information

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BAC

Clone NameB6Ng01-244I02
Chromosome16 (Build37)
Map Location 80,130,439 - 80,230,668
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244I02.bB6Ng01-244I02.g
ACCGA053623GA053624
length1,140932
definitionB6Ng01-244I02.b B6Ng01-244I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,229,532 - 80,230,668)(80,130,439 - 80,131,369)
sequence
gaattctactaccaagaaacttttcaatacaaagggtgtttttgtaggaa
ttgaaaaatattacatgagcaacatttaacaaattatgtacaaacgaact
gaaaacaaaacaattattatttcagcaacaaaaatatctacaaagagatg
taattataattataagagaaatatcttggagatttgagtagaatttcctg
agtgaattaaatagagtcaaggggatattttagattttttacagagatga
cttttaatgagcacaagattctcaaacagatatttcatgattttttttca
tttggaataagaacagcttcattcctttattctattaacttgctcatgat
tttgaaaaagcaaaggtcattattttattgtaaaaatcaagaggttaatg
tcaggggcattgattatatgctgaaaatctccctgctgtaatccataccc
attttaagaaaaagataaatggataaattatagaacccacatatgacatc
aaatgaaaaattcaaagttagctctataatgttgtgaagaacagttgttc
aacatctcaaaatcgattcaaaaatcaattgaaaacacattcactttttg
ttcggctttcacataccctgctttgagaaactttagtcacaacaatttta
aattccatgatttatgataaaataataaagaacaagtgaaaatacaattc
gggtaaagaccaatatgttctactactttagaataagatttaaaatttaa
aaatttaaagaaccgtatgaattgtatagggtctaaaattcttacatgaa
atgtaaggcacagacattttcttgggtagcttttcttttgggtgatcaag
gaatctgaaaggcatcagacatgctaaaacatgatcaggcagaaagacca
attacatgttcaaacacagattcaggcaaacaagtgtacctgtttaaact
ctgtaaaactttattcactagaaaagaaaacataacaaatgtttaataaa
tatagtacaatgcatttctttctgacctgccaaatttaactaatgcataa
aattgtgctaaatattgtagtaaaagataaaacataatttcttttttatt
gtaattcagccaagtcaatactatgttgaaaggaaaataa

gaattctatataaaaactaatgtttgattttatttttgctaaatcacttt
tctgagacaatgttttactatttagctcagacaatactttagcttataat
ctaaagtacagacataatctattataatcatccaagtagaatgagttttg
gttggtgaaattaataaatctaagagataaaagtggatcaaactcgaaaa
ggaaagtagttgatagcaaactgcctaagttttccatgtgaaattcaggc
atgttagaaaaagcaatgacaggcatttttcatgttctcagagcttatta
taaaccattctctagagaaatatttccctgagatataacttcagatctct
tttagaagttatgcagagatcctgagtagttctgcaaaaaaatgtattca
aatctcagctccctgaatcaatatatctaggtttagctatatgttggaaa
agggaatcagttaggtgacctacgaagacctctgagctatataattttat
gagttagtttttccctccttcagtgaattgaatcaattttaacttttagt
tctagtcattggaataggaaacacaatgtctagggtctttggaaaggtct
aactattgaacaaatccttgacccttggcaaattgaggacatctctttta
ctgttttctttaaatgacacttctaaaaagaacctttgggatcttgtgac
tattaatagtttaaagattaaaatataagtgtttctatccatgaaataag
agggagattcttgtgtaccgatttttttatatcacttctctcctttttca
ttatgttgttgaaccttagaatagatctttaagtgaaaggccattaactt
gagaaaaatatctactgtcgatatgttcaagcactgtgcaaggtgtgatg
gatgtagtgtaaatgatgaggtggagaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80229532_80230668
seq2: B6Ng01-244I02.b_44_1183 (reverse)

seq1  TTATTT--CTTTTAACATAGTTATGGACTTGCTGGAATTAC-ATAAAAGA  47
      ||||||  |||| ||||||| ||| ||||||   ||||||| |||||| |
seq2  TTATTTTCCTTTCAACATAG-TATTGACTTGGCTGAATTACAATAAAAAA  49

seq1  -AAATTATG-TTTATCTTTTACTACATATTTTAGCACAATTTTATGCATT  95
       |||||||| ||||||||||||||||   |||||||||||||||||||||
seq2  GAAATTATGTTTTATCTTTTACTACAATATTTAGCACAATTTTATGCATT  99

seq1  AGTTTAAATTGGCAGGTTCAGAAAGAAATGCATTTGTACTTATATTTATT  145
      |||| || |||||||| ||||||||||||||| |||||| ||||||||||
seq2  AGTTAAATTTGGCAGG-TCAGAAAGAAATGCA-TTGTAC-TATATTTATT  146

seq1  -AACATTTGTTATG-TTTCTTTTCTAGTTGAATAAAGTTTTACAGAGTTT  193
       ||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  AAACATTTGTTATGTTTTCTTTTCTAG-TGAATAAAGTTTTACAGAGTTT  195

seq1  TAACAGGTACACTTGTTTGCCTGAATCTGTGTTTGAACATGTAATTGGTC  243
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTACACTTGTTTGCCTGAATCTGTGTTTGAACATGTAATTGGTC  245

seq1  TTTCTGCCTGATCATGTTTTAGCATGTCTGATGCC-TTCAGATTCCTTGA  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTCTGCCTGATCATGTTTTAGCATGTCTGATGCCTTTCAGATTCCTTGA  295

seq1  TCACCCAAAAGAAAAGCTACCCAAGAAAATGTCTGTGCCTTACATTTCAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAAAGAAAAGCTACCCAAGAAAATGTCTGTGCCTTACATTTCAT  345

seq1  GTAAGAATTTTAGACCCTATACAATTCATACGGTTCTTTAAATTTTTAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATTTTAGACCCTATACAATTCATACGGTTCTTTAAATTTTTAAA  395

seq1  TTTTAAATCTTATTCTAAAGTAGTAGAACATATTGGTCTTTACCCGAATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTTATTCTAAAGTAGTAGAACATATTGGTCTTTACCCGAATT  445

seq1  GTATTTTCACTTGTTCTTTATTATTTTATCATAAATCATGGAATTTAAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCACTTGTTCTTTATTATTTTATCATAAATCATGGAATTTAAAA  495

seq1  TTGTTGTGACTAAAGTTTCTCAAAGCAGGGTATGTGAAAGCCGAACAAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGACTAAAGTTTCTCAAAGCAGGGTATGTGAAAGCCGAACAAAA  545

seq1  AGTGAATGTGTTTTCAATTGATTTTTGAATCGATTTTGAGATGTTGAACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGTGTTTTCAATTGATTTTTGAATCGATTTTGAGATGTTGAACA  595

seq1  ACTGTTCTTCACAACATTATAGAGCTAACTTTGAATTTTTCATTTGATGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTTCACAACATTATAGAGCTAACTTTGAATTTTTCATTTGATGT  645

seq1  CATATGTGGGTTCTATAATTTATCCATTTATCTTTTTCTTAAAATGGGTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGGGTTCTATAATTTATCCATTTATCTTTTTCTTAAAATGGGTA  695

seq1  TGGATTACAGCAGGGAGATTTTCAGCATATAATCAATGCCCCTGACATTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACAGCAGGGAGATTTTCAGCATATAATCAATGCCCCTGACATTA  745

seq1  ACCTCTTGATTTTTACAATAAAATAATGACCTTTGCTTTTTCAAAATCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGATTTTTACAATAAAATAATGACCTTTGCTTTTTCAAAATCAT  795

seq1  GAGCAAGTTAATAGAATAAAGGAATGAAGCTGTTCTTATTCCAAATGAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGTTAATAGAATAAAGGAATGAAGCTGTTCTTATTCCAAATGAAA  845

seq1  AAAAATCATGAAATATCTGTTTGAGAATCTTGTGCTCATTAAAAGTCATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATGAAATATCTGTTTGAGAATCTTGTGCTCATTAAAAGTCATC  895

seq1  TCTGTAAAAAATCTAAAATATCCCCTTGACTCTATTTAATTCACTCAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAAAATCTAAAATATCCCCTTGACTCTATTTAATTCACTCAGGA  945

seq1  AATTCTACTCAAATCTCCAAGATATTTCTCTTATAATTATAATTACATCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACTCAAATCTCCAAGATATTTCTCTTATAATTATAATTACATCT  995

seq1  CTTTGTAGATATTTTTGTTGCTGAAATAATAATTGTTTTGTTTTCAGTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGATATTTTTGTTGCTGAAATAATAATTGTTTTGTTTTCAGTTC  1045

seq1  GTTTGTACATAATTTGTTAAATGTTGCTCATGTAATATTTTTCAATTCCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACATAATTTGTTAAATGTTGCTCATGTAATATTTTTCAATTCCT  1095

seq1  ACAAAAACACCCTTTGTATTGAAAAGTTTCTTGGTAGTAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACACCCTTTGTATTGAAAAGTTTCTTGGTAGTAGAATTC  1140


seq1: chr16_80130439_80131369
seq2: B6Ng01-244I02.g_65_996

seq1  GAATTCTATATAAAAACTAATGTTTGATTTTATTTTTGCTAAATCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATAAAAACTAATGTTTGATTTTATTTTTGCTAAATCACTTT  50

seq1  TCTGAGACAATGTTTTACTATTTAGCTCAGACAATACTTTAGCTTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACAATGTTTTACTATTTAGCTCAGACAATACTTTAGCTTATAAT  100

seq1  CTAAAGTACAGACATAATCTATTATAATCATCCAAGTAGAATGAGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTACAGACATAATCTATTATAATCATCCAAGTAGAATGAGTTTTG  150

seq1  GTTGGTGAAATTAATAAATCTAAGAGATAAAAGTGGATCAAACTCGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGAAATTAATAAATCTAAGAGATAAAAGTGGATCAAACTCGAAAA  200

seq1  GGAAAGTAGTTGATAGCAAACTGCCTAAGTTTTCCATGTGAAATTCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAGTTGATAGCAAACTGCCTAAGTTTTCCATGTGAAATTCAGGC  250

seq1  ATGTTAGAAAAAGCAATGACAGGCATTTTTCATGTTCTCAGAGCTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAAAAAGCAATGACAGGCATTTTTCATGTTCTCAGAGCTTATTA  300

seq1  TAAACCATTCTCTAGAGAAATATTTCCCTGAGATATAACTTCAGATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATTCTCTAGAGAAATATTTCCCTGAGATATAACTTCAGATCTCT  350

seq1  TTTAGAAGTTATGCAGAGATCCTGAGTAGTTCTGCAAAAAAATGTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGTTATGCAGAGATCCTGAGTAGTTCTGCAAAAAAATGTATTCA  400

seq1  AATCTCAGCTCCCTGAATCAATATATCTAGGTTTAGCTATATGTTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCTCCCTGAATCAATATATCTAGGTTTAGCTATATGTTGGAAA  450

seq1  AGGGAATCAGTTAGGTGACCTACGAAGACCTCTGAGCTATATAATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATCAGTTAGGTGACCTACGAAGACCTCTGAGCTATATAATTTTAT  500

seq1  GAGTTAGTTTTTCCCTCCTTCAGTGAATTGAATCAATTTTAACTTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTTTTTCCCTCCTTCAGTGAATTGAATCAATTTTAACTTTTAGT  550

seq1  TCTAGTCATTGGAATAGGAAACACAATGTCTAGGGTCTTTGGAAAGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCATTGGAATAGGAAACACAATGTCTAGGGTCTTTGGAAAGGTCT  600

seq1  AACTATTGAACAAATCCTTGACCCTTGGCAAATTGAGGACATCTCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGAACAAATCCTTGACCCTTGGCAAATTGAGGACATCTCTTTTA  650

seq1  CTGTTTTCTTTAAATGACACTTCTAAAAAGAACCTTTGGGATCTTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTTAAATGACACTTCTAAAAAGAACCTTTGGGATCTTGTGAC  700

seq1  TATTAATAGTTTAAAGATTAAAATATAAGTGTTTCTATCCATGAAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGTTTAAAGATTAAAATATAAGTGTTTCTATCCATGAAATAAG  750

seq1  AGGGAGATTCTTGTGTACCGATTTTTTTATATCACTTCTCTCCTTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATTCTTGTGTACCGATTTTTTTATATCACTTCTCTCCTTTTTCA  800

seq1  TTATGTTGTTGAACCTTAGAATAGATCTTTAAGTGAAAGGCCATTAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGTTGAACCTTAGAATAGATCTTTAAGTGAAAGGCCATTAACTT  850

seq1  GAGAAAAATATCTACTGTCGATATGTTCAAGCACTGTGCAAGGTGTGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATATCTACTGTCGATATGTTCAAGCACTGTGCAAGGTGTGATG  900

seq1  GATGTAGTGTAAATGATGAGGT-GAGAGGAAA  931
      |||||||||||||||||||||| |||||||||
seq2  GATGTAGTGTAAATGATGAGGTGGAGAGGAAA  932


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