BAC Information

Click to search

BAC

Clone NameB6Ng01-247C03
Chromosome16 (Build37)
Map Location 90,169,050 - 90,254,902
singlet/doubletdoublet
Overlap geneLOC100040440, Sod1, Sfrs15
Upstream geneEG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694
Downstream geneLOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247C03.bB6Ng01-247C03.g
ACCGA055555GA055556
length1,1401,112
definitionB6Ng01-247C03.b B6Ng01-247C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,169,050 - 90,170,197)(90,253,794 - 90,254,902)
sequence
gaattcagtggtacgttacagaagaaaaatataagctgcgccacaagttc
tcaaacagaacaggaaatcaggccatcagggaatccaggaagctggtgtt
tccaggacaacacctttagagcaaaaaaacatttagcctttcttgggtag
ccaatccaagcatctatttgcctcagcttgagtagacttcagatctcagc
tcttctccctggagactagtggatctcccgaagaaaacagatctgctaca
actaaaaatgaagaaaaggatgacagggcaagggtatcaacgaccaaata
ctggcaagtaatgatgtgagggaggaaggattgtactagctcatggctcg
agagtgagcaccatggtggcaggaaagctgccgctgtgaggccaggccca
tgggagaggagtgtgaacctgcttcctcacatgtcaatcatcaggaggca
cagagatagagaacccataagccttgaccgtatgaccatatgaccctgta
gccatatctctgccaactaagccccatgtcagaaagaaaggaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagagagaaaaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaagaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
aggaaaggaaaggaaaggaaaggaaaggaaaggaaagggaaaaaaggttt
tacaacttcccggaacagtatccctagctgaggaccaaatgttggagcac
aggagcctataggagacttttcacatccaaaacatatggcagcaggcaaa
accaagagctgtgcatccctgcactgcgagggggacgtgcatcatagtac
tgacagatgacaatgccaataacatgggtactctaaaactatgtttttac
tgttcctagaggtaactgcttacacagggtatccatgggtcaccagtcag
agagaccttggccatctttgtctttatacatgcatcagataaaacagata
ttactagtgaatgacctctaccctctgagggtagctccctcctgacgttc
ctccgatctgaattactctgaatgtctaaccgcccacatc
gaattcatttgtgtacttgtagaaaaccagcaaatgtacagttttttttt
ttttttttcaggtagatgagcagcctgtaagtccatgtaatgtcagcaat
gtagacttcctgggaacatcccaaagggcagcggactagaaacttgggca
ggctttctgtgctgtgctcctcaggggcttcttcaggaaacagttcttgg
gggaaagatcatgtccagggcccacttacttgacaggtcgatctgctaca
ctcctggtctactgattaaatgacgtggtctaaagtattttacccccgca
ttaatcgcagtaatgtctttattagggtggacctgacaactggtgcctat
attagatatccaggttgacgcaaaaattacccatcacaatgtacctgtcg
agtagacagtactctaaatgcatctcttcagctctcagatgtgctgagag
tttctcctgcagagagttcatttactttagtgaatggatttctttgtata
ggctgttagtactttttgtttcattcatacttgcatttctagtcttttgg
aatctctgggtagtactgtttgtcattctccgcagcatctgctgctgtta
ctttccctcttacatacagcagtggaaatgctgagtaagaccacggcagt
ggttttacctgaaggagttgtttgcacaaagacattttatgctgggggta
atggcatggggtgtgtatgctgtgtgctctgtgctcctcattgcagtgaa
gcctgttttacactagacactgggaacacttactcagatctctcgacatc
ttcctctaaaccaccagaaatttatttttttaattttttagatttttttt
gtttcaaatctttttccatatcaatatatatggatattaaaactgaaaaa
aaatgtatcttgttgttaccacaagttagtaccttgaaatacaggattat
attcagaaaatactatttgctcttttataaagagtttactgctttgatga
tgcacatctttatccagtactgagaggcagaggcagagcaggcagatttt
ggagttcgaaggctagctcactctacaaagagtgcaaggccaggcctcgg
aactgttcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_90169050_90170197
seq2: B6Ng01-247C03.b_44_1183

seq1  GAATTCAGTGGTACGTTACAGAAGAAAAATATAAGCTGCGCCACAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTACGTTACAGAAGAAAAATATAAGCTGCGCCACAAGTTC  50

seq1  TCAAACAGAACAGGAAATCAGGCCATCAGGGAATCCAGGAAGCTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAACAGGAAATCAGGCCATCAGGGAATCCAGGAAGCTGGTGTT  100

seq1  TCCAGGACAACACCTTTAGAGCAAAAAAACATTTAGCCTTTCTTGGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAACACCTTTAGAGCAAAAAAACATTTAGCCTTTCTTGGGTAG  150

seq1  CCAATCCAAGCATCTATTTGCCTCAGCTTGAGTAGACTTCAGATCTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCAAGCATCTATTTGCCTCAGCTTGAGTAGACTTCAGATCTCAGC  200

seq1  TCTTCTCCCTGGAGACTAGTGGATCTCCCGAAGAAAACAGATCTGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCTGGAGACTAGTGGATCTCCCGAAGAAAACAGATCTGCTACA  250

seq1  ACTAAAAATGAAGAAAAGGATGACAGGGCAAGGGTATCAACGACCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATGAAGAAAAGGATGACAGGGCAAGGGTATCAACGACCAAATA  300

seq1  CTGGCAAGTAATGATGTGAGGGAGGAAGGATTGTACTAGCTCATGGCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGTAATGATGTGAGGGAGGAAGGATTGTACTAGCTCATGGCTCG  350

seq1  AGAGTGAGCACCATGGTGGCAGGAAAGCTGCCGCTGTGAGGCCAGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCACCATGGTGGCAGGAAAGCTGCCGCTGTGAGGCCAGGCCCA  400

seq1  TGGGAGAGGAGTGTGAACCTGCTTCCTCACATGTCAATCATCAGGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGAGTGTGAACCTGCTTCCTCACATGTCAATCATCAGGAGGCA  450

seq1  CAGAGATAGAGAACCCATAAGCCTTGACCGTATGACCATATGACCCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGAGAACCCATAAGCCTTGACCGTATGACCATATGACCCTGTA  500

seq1  GCCATATCTCTGCCAACTAAGCCCCATGTCAGAAAGAAAGGAAGAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATCTCTGCCAACTAAGCCCCATGTCAGAAAGAAAGGAAGAAAGAA  550

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAAAAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAAAAGAAAGA  600

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  650

seq1  GAAAGAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  700

seq1  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAAAAAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAAAAAGGTTT  750

seq1  TACAACTTCCCGGAACAGTATCCCTAGCTGAGGACCAAATGTTGGAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTCCCGGAACAGTATCCCTAGCTGAGGACCAAATGTTGGAGCAC  800

seq1  AGGAGCCTATAGGAGACTTTTCACATCCAAAACATATGGCAGCAGGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTATAGGAGACTTTTCACATCCAAAACATATGGCAGCAGGCAAA  850

seq1  ACCAAGAGCTGTGCATCCCTGCACTGCGAGGGGGACGTGCATCATAGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGCTGTGCATCCCTGCACTGCGAGGGGGACGTGCATCATAGTAC  900

seq1  TGACAGATGACAATGCCAATAACATGGGTACTCTAAAACTATGTTTTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATGACAATGCCAATAACATGGGTACTCTAAAACTATGTTTTTAC  950

seq1  TGTTCCTAGAGGTAACTGCTTACACAGGGTATCCAATGGGTCACCAGTCA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGTTCCTAGAGGTAACTGCTTACACAGGGTATCC-ATGGGTCACCAGTCA  999

seq1  GAGAGACCTTGGCCATCTTTGGTTCTTTATACCATTGCATCAGATTAAAA  1050
      |||||||||||||||||||||  |||||||||   ||||||||| |||||
seq2  GAGAGACCTTGGCCATCTTTG--TCTTTATAC--ATGCATCAGA-TAAAA  1044

seq1  CAGATAATTACATAGTTGAAAGGACCTCTACCCTCCTGAGGGTAGCTCC-  1099
      ||||| ||||| ||||   || |||||||||||| |||||||||||||| 
seq2  CAGAT-ATTAC-TAGT--GAATGACCTCTACCCT-CTGAGGGTAGCTCCC  1089

seq1  -TCTGACGTCTCCTTCCCCATCTGA--TACTCTG-ATGTCT-ACCGGCCA  1144
        ||||||| ||||  || ||||||  ||||||| |||||| |||| |||
seq2  TCCTGACGT-TCCT--CCGATCTGAATTACTCTGAATGTCTAACCGCCCA  1136

seq1  CATC  1148
      ||||
seq2  CATC  1140

seq1: chr16_90253794_90254902
seq2: B6Ng01-247C03.g_65_1176 (reverse)

seq1  CTGTGTAACAGT--CGAGG-CTGGCCTGGCACTCTTTGTAGAGTGAGCTG  47
      ||||| ||||||  ||||| ||||||| ||||||||||||||||||||| 
seq2  CTGTG-AACAGTTCCGAGGCCTGGCCTTGCACTCTTTGTAGAGTGAGCTA  49

seq1  GCC-TCGAACTC--AAATCTGCCTGCTTCTGCCTCTGCCTCTCAAGTACT  94
      ||| ||||||||  |||||||||||| |||||||||||||||| ||||||
seq2  GCCTTCGAACTCCAAAATCTGCCTGC-TCTGCCTCTGCCTCTC-AGTACT  97

seq1  GGGATTAAAGATGTGCATCATCAAAGCAGTAAACTTCTTTATAAAAGAGC  144
      ||   ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GG--ATAAAGATGTGCATCATCAAAGCAGTAAAC-TCTTTATAAAAGAGC  144

seq1  AATTAGTATTTTCTGAATATAAT-CTGTATTTC-AGGTACTAACTTGTGG  192
      || |||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AAATAGTATTTTCTGAATATAATCCTGTATTTCAAGGTACTAACTTGTGG  194

seq1  TAACAACAAGATACATTTTTTTTCAGTTTTAATATCCATATATATTGATA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAAGATACATTTTTTTTCAGTTTTAATATCCATATATATTGATA  244

seq1  TGGAAAAAGATTTGAAACAAAAAAAATCTAAAAAATTAAAAAAAT-AATT  291
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGAAAAAGATTTGAAACAAAAAAAATCTAAAAAATTAAAAAAATAAATT  294

seq1  TCTGGTGGTTTAGAGGAAGATGTCGAGAGATCTGAGTAAGTGTTCCCAGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGTTTAGAGGAAGATGTCGAGAGATCTGAGTAAGTGTTCCCAGT  344

seq1  GTCTAGTGTAAAACAGGCTTCACTGCAATGAGGAGCACAGAGCACACAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTGTAAAACAGGCTTCACTGCAATGAGGAGCACAGAGCACACAGC  394

seq1  ATACACACCCCATGCCATTACCCCCAGCATAAAATGTCTTTGTGCAAACA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACCCCATGCCATTACCCCCAGCATAAAATGTCTTTGTGCAAACA  444

seq1  ACTCCTTCAGGTAAAACCACTGCCGTGGTCTTACTCAGCATTTCCACTGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCAGGTAAAACCACTGCCGTGGTCTTACTCAGCATTTCCACTGC  494

seq1  TGTATGTAAGAGGGAAAGTAACAGCAGCAGATGCTGCGGAGAATGACAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAAGAGGGAAAGTAACAGCAGCAGATGCTGCGGAGAATGACAAA  544

seq1  CAGTACTACCCAGAGATTCCAAAAGACTAGAAATGCAAGTATGAATGAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTACCCAGAGATTCCAAAAGACTAGAAATGCAAGTATGAATGAAA  594

seq1  CAAAAAGTACTAACAGCCTATACAAAGAAATCCATTCACTAAAGTAAATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTACTAACAGCCTATACAAAGAAATCCATTCACTAAAGTAAATG  644

seq1  AACTCTCTGCAGGAGAAACTCTCAGCACATCTGAGAGCTGAAGAGATGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTGCAGGAGAAACTCTCAGCACATCTGAGAGCTGAAGAGATGCA  694

seq1  TTTAGAGTACTGTCTACTCGACAGGTACATTGTGATGGGTAATTTTTGCG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTACTGTCTACTCGACAGGTACATTGTGATGGGTAATTTTTGCG  744

seq1  TCAACCTGGATATCTAATATAGGCACCAGTTGTCAGGTCCACCCTAATAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGGATATCTAATATAGGCACCAGTTGTCAGGTCCACCCTAATAA  794

seq1  AGACATTACTGCGATTAATGCGGGGGTAAAATACTTTAGACCACGTCATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTACTGCGATTAATGCGGGGGTAAAATACTTTAGACCACGTCATT  844

seq1  TAATCAGTAGACCAGGAGTGTAGCAGATCGACCTGTCAAGTAAGTGGGCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGTAGACCAGGAGTGTAGCAGATCGACCTGTCAAGTAAGTGGGCC  894

seq1  CTGGACATGATCTTTCCCCCAAGAACTGTTTCCTGAAGAAGCCCCTGAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATGATCTTTCCCCCAAGAACTGTTTCCTGAAGAAGCCCCTGAGG  944

seq1  AGCACAGCACAGAAAGCCTGCCCAAGTTTCTAGTCCGCTGCCCTTTGGGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCACAGAAAGCCTGCCCAAGTTTCTAGTCCGCTGCCCTTTGGGA  994

seq1  TGTTCCCAGGAAGTCTACATTGCTGACATTACATGGACTTACAGGCTGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAAGTCTACATTGCTGACATTACATGGACTTACAGGCTGCT  1044

seq1  CATCTACCTGAAAAAAAAAAAAAAAAACTGTACATTTGCTGGTTTTCTAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCTGAAAAAAAAAAAAAAAAACTGTACATTTGCTGGTTTTCTAC  1094

seq1  AAGTACACAAATGAATTC  1109
      ||||||||||||||||||
seq2  AAGTACACAAATGAATTC  1112