BAC Information

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BAC

Clone NameB6Ng01-250P05
Chromosome16 (Build37)
Map Location 88,280,558 - 88,424,666
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250P05.bB6Ng01-250P05.g
ACCGA058349GA058350
length1,1191,113
definitionB6Ng01-250P05.b B6Ng01-250P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,280,558 - 88,281,684)(88,423,553 - 88,424,666)
sequence
gaattcaatcccctccctctcattaccattggaaggtcgggggcaaggct
ggaggaagatggagcacagcctccgtttttaaggtgaggccatctgatgt
ccagtgagggatgagcgcagggacacaatgtagttagatgtcaacaccaa
gacagggatcaaactggaggaaactggtctcatgtacagcctgaaggaat
gtgtgatctttagagaactttaatctccatagggagaaagaagaaaagat
atttgtataaatatgcatttaaagttgacagtgagcaatttgatatgacc
ccagtggaattttgggctcttgtgcctagttaagtttaatgacagataaa
taatgccagttccacataattggcttagagactatcaatgtcaggcatag
catagctgtttgttttcctacagcagtgtctcaattcatcccaaaggcac
caaatgcagatgtgccctgatgggcctgctcactacaaccttcaagctga
tggacaggggagtgactttcctcaaagatgtcatgatgaaggcaagcaag
aaatccttaaggctggaaggactctcattacagcagacttttcaggatgc
ctatctgcatgcaaatgactgcttcaatcacctagaatctgagaaatggc
tgctttatccaatcatgtttaaattggacaagagtaatgacaggaatcaa
tgtgaaagaaatattcccaatccacactcctaacaaaaagaacaaatttt
ccctgtccgtattcactgtaagttctcaataagtgcaaagaaatacaggc
agctatcgagtgccgagagaaagagaaatggtcttctccggggaagaaca
tactacctgattatttgataccaaacggtcagtattaaaaacatatgtaa
tatagactatacttatatatttatgaatatgtatatatgtaaatatatta
tgtatatgcatacatgtaagtaacaaaagagacatgaatttgaaagatca
tgaggggtctatcggagggtttagagagtagaaaggggaagtatatgata
catatgagtcttcaaaagtaagaataaaaaattctaaaaacaaattgtat
accacctgatgtgaagtct
gaattcaacaggaaggtttcagaaaagttcttgggttttctaagacattg
ggaaggaaagcatcacccttccctgtctgctgctgttagtaaatgacaac
caacttcctttccagtcaactccagtggcatctgtgggacttactcaagg
atgggcaggaaggctccaaagtgataactggtttctcaccttctgtagtt
tctagacagtacctgattcaatgtccccttggtcttcaaggccaggagct
tcttatcattttcttccaggtcttcttttccttgctttttattatattga
ttttgtttgaagggtcatacttgttcttcttatgagaactctttgaagta
cactgggcctatctatgcagataatacaggacagtctcttgactcttagg
atccttatttaatcaaagcttaaaacatctccattgccatgtaagataac
atatttataaattttaagaatgaggatataaaactctgaatgggccataa
cctacctgtcatatacaatacccagaaaagaattttgaatacaaattgaa
tactaagcaagtctcagaaaataatagaatttatggtaatgatttattag
cataactaaacttaaaataagtatacctccatgattatgttgacttttta
atttgaaaattttacaaaatttaatggaaaataaaaaaatattttctcta
ataaggctttgacttgttttgattcatgtctcaatatgcactggcaaagt
tgtcgaatgttaatccaagtgaataaattacttgtagcctttaatgaaag
gcaagaaggtataaatctgtatgagccttttggcttctcatgtataaatt
gatatgtaatgtctcctggaattttggcatctaggtaatgtcacttctat
aattaacctgtggtcaacctattcctgccttttaagaataaggttattgc
atccgtctcggaataagaaatacagtccatcaagctgtcatttcaggaac
cattacctcttgtttaagggaaatcttagcatacattctgaattcttaag
tttcctgaccctgaattccttatgccttggatatgaatagcaattcctat
actgattcacgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88280558_88281684
seq2: B6Ng01-250P05.b_49_1167

seq1  GAATTCAATCCCCTCCCTCTCATTACCATTGGAAGGTCGGGGGCAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCCTCCCTCTCATTACCATTGGAAGGTCGGGGGCAAGGCT  50

seq1  GGAGGAAGATGGAGCACAGCCTCCGTTTTTAAGGTGAGGCCATCTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGATGGAGCACAGCCTCCGTTTTTAAGGTGAGGCCATCTGATGT  100

seq1  CCAGTGAGGGATGAGCGCAGGGACACAATGTAGTTAGATGTCAACACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGGGATGAGCGCAGGGACACAATGTAGTTAGATGTCAACACCAA  150

seq1  GACAGGGATCAAACTGGAGGAAACTGGTCTCATGTACAGCCTGAAGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGATCAAACTGGAGGAAACTGGTCTCATGTACAGCCTGAAGGAAT  200

seq1  GTGTGATCTTTAGAGAACTTTAATCTCCATAGGGAGAAAGAAGAAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATCTTTAGAGAACTTTAATCTCCATAGGGAGAAAGAAGAAAAGAT  250

seq1  ATTTGTATAAATATGCATTTAAAGTTGACAGTGAGCAATTTGATATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAAATATGCATTTAAAGTTGACAGTGAGCAATTTGATATGACC  300

seq1  CCAGTGGAATTTTGGGCTCTTGTGCCTAGTTAAGTTTAATGACAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAATTTTGGGCTCTTGTGCCTAGTTAAGTTTAATGACAGATAAA  350

seq1  TAATGCCAGTTCCACATAATTGGCTTAGAGACTATCAATGTCAGGCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGTTCCACATAATTGGCTTAGAGACTATCAATGTCAGGCATAG  400

seq1  CATAGCTGTTTGTTTTCCTACAGCAGTGTCTCAATTCATCCCAAAGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGTTTGTTTTCCTACAGCAGTGTCTCAATTCATCCCAAAGGCAC  450

seq1  CAAATGCAGATGTGCCCTGATGGGCCTGCTCACTACAACCTTCAAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGATGTGCCCTGATGGGCCTGCTCACTACAACCTTCAAGCTGA  500

seq1  TGGACAGGGGAGTGACTTTCCTCAAAGATGTCATGATGAAGGCAAGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGGGAGTGACTTTCCTCAAAGATGTCATGATGAAGGCAAGCAAG  550

seq1  AAATCCTTAAGGCTGGAAGGACTCTCATTACAGCAGACTTTTCAGGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTAAGGCTGGAAGGACTCTCATTACAGCAGACTTTTCAGGATGC  600

seq1  CTATCTGCATGCAAATGACTGCTTCAATCACCTAGAATCTGAGAAATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGCATGCAAATGACTGCTTCAATCACCTAGAATCTGAGAAATGGC  650

seq1  TGCTTTATCCAATCATGTTTAAATTGGACAAGAGTAATGACAGGAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATCCAATCATGTTTAAATTGGACAAGAGTAATGACAGGAATCAA  700

seq1  TGTGAAAGAAATATTCCCAATCCACACTCCTAACAAAAAGAACAAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAAATATTCCCAATCCACACTCCTAACAAAAAGAACAAATTTT  750

seq1  CCCTGTCCGTATTCACTGTAAGTTCTCAATAAGTGCAAAGAAATACAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCGTATTCACTGTAAGTTCTCAATAAGTGCAAAGAAATACAGGC  800

seq1  AGCTATCGAGTGCCGAGAGAAAGAGAAATGGTCTTCTCCGGGGAAGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCGAGTGCCGAGAGAAAGAGAAATGGTCTTCTCCGGGGAAGAACA  850

seq1  TACTACCTGATTATTTGATACCAAACGGTCAGTATTAAAAACATATGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCTGATTATTTGATACCAAACGGTCAGTATTAAAAACATATGTAA  900

seq1  TATAGACTATACTTATATATTTATGAATATGTATATATGTAAATATATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACTATACTTATATATTTATGAATATGTATATATGTAAATATATTA  950

seq1  TGTATATGCATACATGTAAGTAACAAAAGAGAACATGAATTTGAAAGATC  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTATATGCATACATGTAAGTAACAAAAGAG-ACATGAATTTGAAAGATC  999

seq1  AATGAGGGGTCTATCGGAGGGTTTAGAAGGAGTAAGAAAGGGGGAAGTAA  1050
       ||||||||||||||||||||||||||  |||| ||||| |||||||| |
seq2  -ATGAGGGGTCTATCGGAGGGTTTAGA--GAGT-AGAAA-GGGGAAGT-A  1043

seq1  TATGATTACATATGAGTCTCAAAAAGTAAGATAAAAAATTTCTAAAAACA  1100
      ||||| |||||||||||||  ||||||||||  ||||| |||||||||||
seq2  TATGA-TACATATGAGTCTTCAAAAGTAAGAATAAAAAATTCTAAAAACA  1092

seq1  AATTGTATACCACTGAATGTGAAGTCT  1127
      |||||||||||||   |||||||||||
seq2  AATTGTATACCACCTGATGTGAAGTCT  1119

seq1: chr16_88423553_88424666
seq2: B6Ng01-250P05.g_67_1179 (reverse)

seq1  TCCGTG-ATCAGTATAGGGAATTTGCTA-TCATATCCAAGGCATAAGAAA  48
      |||||| |||||||||||  | |||||| |||||||||||||||||| ||
seq2  TCCGTGAATCAGTATAGG--AATTGCTATTCATATCCAAGGCATAAGGAA  48

seq1  TTCAGGGTCAGGAAACCTTAAGAATTCAAGATGTATGCT-AGATTTCCCT  97
      ||||||||||||||| ||||||||||||  ||||||||| ||||||||||
seq2  TTCAGGGTCAGGAAA-CTTAAGAATTCAGAATGTATGCTAAGATTTCCCT  97

seq1  TAAACAAGAGGTAATGGTTCCTGAATTGACAGCTTTGATGGACTGTATTT  147
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TAAACAAGAGGTAATGGTTCCTGAAATGACAGC-TTGATGGACTGTATTT  146

seq1  CTTATTCCGAGACGGATGCAATAACCTTATTCTTAAAAGGCAGGAATAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCCGAGACGGATGCAATAACCTTATTCTTAAAAGGCAGGAATAGG  196

seq1  TTGACCACAGGTTAATTATAGAAGTGACATTACCTAGATGCCAAAATTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACAGGTTAATTATAGAAGTGACATTACCTAGATGCCAAAATTCC  246

seq1  AGGAGACATTACATATCAATTTATACATGAGAAGCCAAAAGGCTCATACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACATTACATATCAATTTATACATGAGAAGCCAAAAGGCTCATACA  296

seq1  GATTTATACCTTCTTGCCTTTCATTAAAGGCTACAAGTAATTTATTCACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATACCTTCTTGCCTTTCATTAAAGGCTACAAGTAATTTATTCACT  346

seq1  TGGATTAACATTCGACAACTTTGCCAGTGCATATTGAGACATGAATCAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAACATTCGACAACTTTGCCAGTGCATATTGAGACATGAATCAAA  396

seq1  ACAAGTCAAAGCCTTATTAGAGAAAATATTTTTTTATTTTCCATTAAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAAAGCCTTATTAGAGAAAATATTTTTTTATTTTCCATTAAATT  446

seq1  TTGTAAAATTTTCAAATTAAAAAGTCAACATAATCATGGAGGTATACTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAATTTTCAAATTAAAAAGTCAACATAATCATGGAGGTATACTTA  496

seq1  TTTTAAGTTTAGTTATGCTAATAAATCATTACCATAAATTCTATTATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTAGTTATGCTAATAAATCATTACCATAAATTCTATTATTTT  546

seq1  CTGAGACTTGCTTAGTATTCAATTTGTATTCAAAATTCTTTTCTGGGTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTTGCTTAGTATTCAATTTGTATTCAAAATTCTTTTCTGGGTAT  596

seq1  TGTATATGACAGGTAGGTTATGGCCCATTCAGAGTTTTATATCCTCATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGACAGGTAGGTTATGGCCCATTCAGAGTTTTATATCCTCATTC  646

seq1  TTAAAATTTATAAATATGTTATCTTACATGGCAATGGAGATGTTTTAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTATAAATATGTTATCTTACATGGCAATGGAGATGTTTTAAGC  696

seq1  TTTGATTAAATAAGGATCCTAAGAGTCAAGAGACTGTCCTGTATTATCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAAATAAGGATCCTAAGAGTCAAGAGACTGTCCTGTATTATCTG  746

seq1  CATAGATAGGCCCAGTGTACTTCAAAGAGTTCTCATAAGAAGAACAAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATAGGCCCAGTGTACTTCAAAGAGTTCTCATAAGAAGAACAAGTA  796

seq1  TGACCCTTCAAACAAAATCAATATAATAAAAAGCAAGGAAAAGAAGACCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTCAAACAAAATCAATATAATAAAAAGCAAGGAAAAGAAGACCT  846

seq1  GGAAGAAAATGATAAGAAGCTCCTGGCCTTGAAGACCAAGGGGACATTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAATGATAAGAAGCTCCTGGCCTTGAAGACCAAGGGGACATTGA  896

seq1  ATCAGGTACTGTCTAGAAACTACAGAAGGTGAGAAACCAGTTATCACTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTACTGTCTAGAAACTACAGAAGGTGAGAAACCAGTTATCACTTT  946

seq1  GGAGCCTTCCTGCCCATCCTTGAGTAAGTCCCACAGATGCCACTGGAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTCCTGCCCATCCTTGAGTAAGTCCCACAGATGCCACTGGAGTT  996

seq1  GACTGGAAAGGAAGTTGGTTGTCATTTACTAACAGCAGCAGACAGGGAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAAGGAAGTTGGTTGTCATTTACTAACAGCAGCAGACAGGGAAG  1046

seq1  GGTGATGCTTTCCTTCCCAATGTCTTAGAAAACCCAAGAACTTTTCTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCTTTCCTTCCCAATGTCTTAGAAAACCCAAGAACTTTTCTGAA  1096

seq1  ACCTTCCTGTTGAATTC  1114
      |||||||||||||||||
seq2  ACCTTCCTGTTGAATTC  1113