BAC Information

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BAC

Clone NameB6Ng01-252I01
Chromosome16 (Build37)
Map Location 76,246,702 - 76,376,730
singlet/doubletdoublet
Overlap geneLOC100039457, Nrip1
Upstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik
Downstream geneLOC100039316, 1700063K16Rik, LOC665120, Usp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252I01.bB6Ng01-252I01.g
ACCGA059480GA059481
length1,1981,131
definitionB6Ng01-252I01.b B6Ng01-252I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,246,702 - 76,247,903)(76,375,609 - 76,376,730)
sequence
gaattctttggaaagacaatcttcacttcctgtggcgcactctttcacta
tgtggtaagacatctgcattgtttaagtctcaattttatttgcaaacaat
gaacagaggttggctatgactcgcaggaacaacacaaatacgaaacaggg
taacagcatgaagtagacactataggtgctttctctgagtgtttactttc
aaaggcactaatactttgtaagctttcaatatcattaggtcttacacttt
gaagaatttgagatgaactctccatcttctatatctaagtttaacaagtg
attgtcacgtgccagttatatttgctatgtatttgtatatttcattacca
aatgaaaatagctccacagaacttaatcatttatgtttagcaggaaacat
cgctgttcaacatttagtttatcagaaagtaatgaataaaaatacggcta
acccccttataaactcaagagatatcatattatggtataaaactttaaca
agttctttcaatcctttaagggaaagttcaaactgcagatacattgacaa
gaatttttaattttctttatattattacatcatcttctgtctactgaaat
atactattttacaactcatgatatataactgtgactacttgtatttctat
atttctctatgatctatatgggacttttcattttttattttatttatata
ttatttttttgtggtcctgttgctcaggtctggaccttctgtaactggca
cacactccagctatacattttgagagacagtcaaacagctttgcatctta
ttctagatttttcatctggtataatacctttctcctagcattatatcacc
tgagccaccttttgcttctgcacattccctgtcaccttatcacaatgctg
actgagaaggactacccgactcaggcactgtagcttctaaaataattgat
caaaacagtattggggttgtagaaaagagtcaggattccctgaaagtcta
gacaggacctcagggtttcagtccactgtcttccaagtttactatgtaga
caggagggatccctcagctatcccttagcctatcagctgttcctataata
tatacgtttatttgggagttccaggtcctcaatagtccaaagtgaacaga
atatgtcactcattaagcgaattgcgataggtcagaatttagcctaga

gaattccagtggcctgagaaacattaagaaagtttgtttgtttgtttgtt
tgtttgtttatttatattttatttgccttggtgttttgcctgcatgtatg
tctgtgtaagggtgtcagatccaggagttacagacagatagatgtgaact
gccatgtgggtgctgggaattgatcccgagtcctctgacagagtagacgg
tgttcttaagcactgagccatgtctctagagccaagtgatagactttgta
taacacataggtttaggtctataaaccgaatgacatcttttccattacac
acgcttcttatgagaactggcctccaaataacaaatcactgcagagacat
ttgtacattccctatactccaatatccacataatgattccccttagcctg
gacacttgtatttttataaatataaaattattaaatacacagtaggagct
gggagagaccagtcagcatgtatgcgactccattcctgggaacagagaaa
agttgtgtgtatttgtgtggctgtatgtgctgtgcacacgtgcagagttc
agaggataactttatggagcgtgtttccaaggatcagattcaggtagcca
ggcttatgcgctaagtgcttttacctttgagccatcttactgtctcagta
ctgattttctttctaacagaaagaataaactcaaaatgatcttctcacaa
ttagcaattctacataagctatgcagttcattcaacacacgtgtgttatc
agaagagtccaggattttacttattacattgggtgggggtggtctgcttt
ggtatatcgtctaatatatagctgttggagttttagcactgatactgggc
agcagaacaaacgagaattagcttgctgggggcaatctcggagatctaaa
acctccttaaaaagtgaagaatgtttttcagaagctgaacatcttggagt
gggcctcaaaatatctgtctccacgtcctgtcacgtgcagcccctccatg
gggagcctccactctccctacggccatttatgacttagcctacctttatt
gaatggtgaacaaggctatctggactctcaaatgtgtcaaagaaagaact
gccatcaagataggaaattgttgccctactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76246702_76247903
seq2: B6Ng01-252I01.b_48_1245

seq1  GAATTCTTTGGAAAGACAATCTTCACTTCCTGTGGCGCACTCTTTCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAAGACAATCTTCACTTCCTGTGGCGCACTCTTTCACTA  50

seq1  TGTGGTAAGACATCTGCATTGTTTAAGTCTCAATTTTATTTGCAAACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAAGACATCTGCATTGTTTAAGTCTCAATTTTATTTGCAAACAAT  100

seq1  GAACAGAGGTTGGCTATGACTCGCAGGAACAACACAAATACGAAACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGTTGGCTATGACTCGCAGGAACAACACAAATACGAAACAGGG  150

seq1  TAACAGCATGAAGTAGACACTATAGGTGCTTTCTCTGAGTGTTTACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATGAAGTAGACACTATAGGTGCTTTCTCTGAGTGTTTACTTTC  200

seq1  AAAGGCACTAATACTTTGTAAGCTTTCAATATCATTAGGTCTTACACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTAATACTTTGTAAGCTTTCAATATCATTAGGTCTTACACTTT  250

seq1  GAAGAATTTGAGATGAACTCTCCATCTTCTATATCTAAGTTTAACAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTGAGATGAACTCTCCATCTTCTATATCTAAGTTTAACAAGTG  300

seq1  ATTGTCACGTGCCAGTTATATTTGCTATGTATTTGTATATTTCATTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACGTGCCAGTTATATTTGCTATGTATTTGTATATTTCATTACCA  350

seq1  AATGAAAATAGCTCCACAGAACTTAATCATTTATGTTTAGCAGGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATAGCTCCACAGAACTTAATCATTTATGTTTAGCAGGAAACAT  400

seq1  CGCTGTTCAACATTTAGTTTATCAGAAAGTAATGAATAAAAATACGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTTCAACATTTAGTTTATCAGAAAGTAATGAATAAAAATACGGCTA  450

seq1  ACCCCCTTATAAACTCAAGAGATATCATATTATGGTATAAAACTTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTATAAACTCAAGAGATATCATATTATGGTATAAAACTTTAACA  500

seq1  AGTTCTTTCAATCCTTTAAGGGAAAGTTCAAACTGCAGATACATTGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCAATCCTTTAAGGGAAAGTTCAAACTGCAGATACATTGACAA  550

seq1  GAATTTTTAATTTTCTTTATATTATTACATCATCTTCTGTCTACTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAATTTTCTTTATATTATTACATCATCTTCTGTCTACTGAAAT  600

seq1  ATACTATTTTACAACTCATGATATATAACTGTGACTACTTGTATTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTTACAACTCATGATATATAACTGTGACTACTTGTATTTCTAT  650

seq1  ATTTCTCTATGATCTATATGGGACTTTTCATTTTTTATTTTATTTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTATGATCTATATGGGACTTTTCATTTTTTATTTTATTTATATA  700

seq1  TTATTTTTTTGTGGTCCTGTTGCTCAGGTCTGGACCTTCTGTAACTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTGTGGTCCTGTTGCTCAGGTCTGGACCTTCTGTAACTGGCA  750

seq1  CACACTCCAGCTATACATTTTGAGAGACAGTCAAACAGCTTTGCATCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCAGCTATACATTTTGAGAGACAGTCAAACAGCTTTGCATCTTA  800

seq1  TTCTAGATTTTTCATCTGGTATAATACCTTTCTCCTAGCATTATATCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATTTTTCATCTGGTATAATACCTTTCTCCTAGCATTATATCACC  850

seq1  TGAGCCACC-TTTGCTTCTGCACATT-CCTGTCACCTTATCACAATGCTG  898
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  TGAGCCACCTTTTGCTTCTGCACATTCCCTGTCACCTTATCACAATGCTG  900

seq1  ACTGAGAAGGACTA-CCGACTCAGGCACTGTAGCTTCTAAAATAATTGAT  947
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGGACTACCCGACTCAGGCACTGTAGCTTCTAAAATAATTGAT  950

seq1  CAAAACAGTATT-GGGTTGTAGAAAAGAGTCAGGATTCCCTG-AAGTCTA  995
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CAAAACAGTATTGGGGTTGTAGAAAAGAGTCAGGATTCCCTGAAAGTCTA  1000

seq1  GACAGGACCTCAGGGTTTCAGTCCACTGTCTTCCAAGTTTACTATGTAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGACCTCAGGGTTTCAGTCCACTGTCTTCCAAGTTTACTATGTAGA  1050

seq1  CA-GAGGGATCCCCAAGCTATCCC-TAGCTATTCAGCTTGTTTTCTATAA  1093
      || ||||||||||  ||||||||| ||||   ||||||   || ||||||
seq2  CAGGAGGGATCCCTCAGCTATCCCTTAGCCTATCAGCT--GTTCCTATAA  1098

seq1  TATATTACGTTTATTTTGGAAGTCCAG--TCTCAATAAGGTCAAAAGTG-  1140
      |||| ||||||||||| |||  |||||   |||||||  ||| |||||| 
seq2  TATA-TACGTTTATTTGGGAGTTCCAGGTCCTCAATA--GTCCAAAGTGA  1145

seq1  ACAGAAATAGTACAACTACAATAAAGCAAAAATATGCAGTAGGGGTCAGA  1190
      ||||||   ||   |||   || |||| ||    |||  ||  |||||||
seq2  ACAGAATATGT--CACT--CATTAAGCGAA---TTGCGATA--GGTCAGA  1186

seq1  GTTTAGCCTAGA  1202
       |||||||||||
seq2  ATTTAGCCTAGA  1198


seq1: chr16_76375609_76376730
seq2: B6Ng01-252I01.g_67_1197 (reverse)

seq1  CAGTAGGCAAACATTTCCTTCTCTTTTGATTGGCAGTTTCTTCTCTGGAA  50
      |||||||  |||| ||  | || | |||| ||||||||  |||| ||  |
seq2  CAGTAGGGCAACAATT--TCCTATCTTGA-TGGCAGTTCTTTCTTTG--A  45

seq1  CACA-TTGAGAGTCCAGATAG-CTTG-TCACAATTAATATAAAGGTAAGC  97
      |||| |||||||||||||||| |||| |||| ||| | ||||||||| ||
seq2  CACATTTGAGAGTCCAGATAGCCTTGTTCACCATTCA-ATAAAGGTAGGC  94

seq1  TAAGTAATAAATGGCCTGTA-GGAGAGT-GAAGCT-CCCATGGA-GGGCT  143
      ||||| |||||||||| ||| ||||||| || ||| |||||||| |||||
seq2  TAAGTCATAAATGGCC-GTAGGGAGAGTGGAGGCTCCCCATGGAGGGGCT  143

seq1  GCA-GTGACA-GACGTGGAGACAGATA-TTTGA-GCCCACT-CAAG-TG-  186
      ||| |||||| |||||||||||||||| ||||| ||||||| |||| || 
seq2  GCACGTGACAGGACGTGGAGACAGATATTTTGAGGCCCACTCCAAGATGT  193

seq1  TCA--CTCTGAAAAACATTC-TCACTTTTTAAGGAGGTTTTAGATCTCCG  233
      |||   |||||||||||||| |||||||||||||||||||||||||||||
seq2  TCAGCTTCTGAAAAACATTCTTCACTTTTTAAGGAGGTTTTAGATCTCCG  243

seq1  AGATTG-CCCCAGCAAGCTAAATCTCGTTTGTTCTGCTTGCCCAGTATCA  282
      |||||| |||||||||||||| ||||||||||||||| ||||||||||||
seq2  AGATTGCCCCCAGCAAGCTAATTCTCGTTTGTTCTGC-TGCCCAGTATCA  292

seq1  GTGCTAAAACTCCAACAGCTATATATTAGACGATATACCAAAGCAGACCA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAAACTCCAACAGCTATATATTAGACGATATACCAAAGCAGACCA  342

seq1  CCCCCACCCAATGTAATAAGTAAAATCCTGGACTCTTCTTGATAACACAC  382
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCCCACCCAATGTAATAAGTAAAATCCTGGACTCTTC-TGATAACACAC  391

seq1  GTGTGTTGAATGAACTGCATAGCTTATGTAGAATTGCTAATTGTGAGAAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGAATGAACTGCATAGCTTATGTAGAATTGCTAATTGTGAGAAG  441

seq1  ATCATTTTGAGTTTATTCTTTCTGTTAGAAAGAAAATCAGTACTGAGACA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTGAGTTTATTCTTTCTGTTAGAAAGAAAATCAGTACTGAGACA  491

seq1  GTAAGATGGCTCAAAGGTAAAAGCACTTAGCGCATAAGCCTGGCTACCTG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATGGCTCAAAGGTAAAAGCACTTAGCGCATAAGCCTGGCTACCTG  541

seq1  AATCTGATCCTTGGAAACACGCTCCATAAAGTTATCCTCTGAACTCTGCA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATCCTTGGAAACACGCTCCATAAAGTTATCCTCTGAACTCTGCA  591

seq1  CGTGTGCACAGCACATACAGCCACACAAATACACACAACTTTTCTCTGTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCACAGCACATACAGCCACACAAATACACACAACTTTTCTCTGTT  641

seq1  CCCAGGAATGGAGTCGCATACATGCTGACTGGTCTCTCCCAGCTCCTACT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAATGGAGTCGCATACATGCTGACTGGTCTCTCCCAGCTCCTACT  691

seq1  GTGTATTTAATAATTTTATATTTATAAAAATACAAGTGTCCAGGCTAAGG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTAATAATTTTATATTTATAAAAATACAAGTGTCCAGGCTAAGG  741

seq1  GGAATCATTATGTGGATATTGGAGTATAGGGAATGTACAAATGTCTCTGC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATTATGTGGATATTGGAGTATAGGGAATGTACAAATGTCTCTGC  791

seq1  AGTGATTTGTTATTTGGAGGCCAGTTCTCATAAGAAGCGTGTGTAATGGA  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTGTTATTTGGAGGCCAGTTCTCATAAGAAGCGTGTGTAATGGA  841

seq1  AAAGATGTCATTCGGTTTATAGACCTAAACCTATGTGTTATACAAAGTCT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCATTCGGTTTATAGACCTAAACCTATGTGTTATACAAAGTCT  891

seq1  ATCACTTGGCTCTAGAGACATGGCTCAGTGCTTAAGAACACCGTCTACTC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGGCTCTAGAGACATGGCTCAGTGCTTAAGAACACCGTCTACTC  941

seq1  TGTCAGAGGACTCGGGATCAATTCCCAGCACCCACATGGCAGTTCACATC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAGGACTCGGGATCAATTCCCAGCACCCACATGGCAGTTCACATC  991

seq1  TATCTGTCTGTAACTCCTGGATCTGACACCCTTACACAGACATACATGCA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCTGTAACTCCTGGATCTGACACCCTTACACAGACATACATGCA  1041

seq1  GGCAAAACACCAAGGCAAATAAAATATAAATAAACAAACAAACAAACAAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACACCAAGGCAAATAAAATATAAATAAACAAACAAACAAACAAA  1091

seq1  CAAACAAACTTTCTTAATGTTTCTCAGGCCACTGGAATTC  1122
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACTTTCTTAATGTTTCTCAGGCCACTGGAATTC  1131


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