BAC Information

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BAC

Clone NameB6Ng01-253F19
Chromosome16 (Build37)
Map Location 81,503,008 - 81,504,174
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253F19.bB6Ng01-253F19.g
ACCGA060118GA060119
length1,1741,162
definitionB6Ng01-253F19.b B6Ng01-253F19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttttgctctgtaccccattttttcttttttattagatatt
ttctttatttacatttcaaatgttatcccctttcctagtttcccctccga
aaatgccctatccccatttttatatgggttatttggtttatggagtctaa
cttaatgagttctttatatattttggaaattagccctctatcagatgatg
ggttagtgaaaaactcttccaatctttaggttgcctttttgtgtttttga
gtgtcctttgccttacagaagctttttggttgaagacgtcccatttatct
attattgatcttagtgtctgagccattggtgttctgttcagtaaattttc
ccctgtgccaatcagttctacggtattttgcagtttctcttcaatttgat
tcagtgtatgtttttatgttgaaatccttaacagaattgggcttttcttt
gtgcagtgtgatgaatatggaccaatttgcatttctctacatacagattg
ccagttagacaagctccgtttgttgaagattctttcttttttccacttta
tggttttgacttctttgtcagatatcaagtgtctgtatgtgggtgggttt
atttctaggtcttcagatctatttcattgatcaatgtttcttccctggta
ttcataccatgcagttatgtatcactattgttgtgtagtactacttgagg
tcagggatggtgattcattcagaaattcttatattgttcagaaatgtttt
ggatatcatgggattttttgtctttccatataaagttgaaaattgctgtt
cccatgtctgtgaagagttgttttggattttgatgggaattgcattgaac
atctagaatgcttttggtaagatagccattttcactatgttaatctttct
gatccatgcgcatgggaggtcctttccatcttctgaggacttcttcgcca
acattcacgtgaaactgaacaacactctctcatgataccttggtcagagg
aaatttaaaaaataaataaataagaagaaataaagactttagagttatga
aatgagcacaacataccaaactaatggacacatgaaagcgtttctagagg
aactcatagctctggatgcttcagagaaccgtgagagccatatcttagca
gccttgtacaaccatcttatagct

gaattcccatggtacctggactgatttcagctaattgccatagctgattc
ttcatacgtctcaacatatagtagacctgtatctatgaaatcatttattg
aattagcctcaaaatgtgccaaaagatatattagctttttactcccttga
tagttttcagtgaataaatcaaaagtgaggaaattcagagggctgagaag
actcaatgtgcttcaggaaatttttgaaatgcagtaaattcttcactaat
taagggggctaacttcttcacaaaataagtaatgagttcaagggagaaaa
tgtagtagcaggaaagtcattttagattacagtgcaaaatattgtgtgtt
tagactgtgaaccaaatatgccttgtcttgaggttttgagttttgattta
tttaatttttaattactgaacatctcttatgtgtcaaatataaatccaga
tactgtaaagaaaagaacattgtctgcagttcaaaaacttgtgtcttaat
taggagactaaaagtcaccataagctgctgaaatactgaacactctgaca
aatgttcttgactgctttcatgattgaatgggtagcatcgagcatatgtg
tgcaaagtgataaagccataagattactaggcattcagctctatggaatt
tcccttataaatatgtcagttgttaaccggaatgccttcaaagttgttat
gaattcttggccatctgggaaaaaaaaaactggctgtgaggcagcaatgt
acaaataacacacagcagagatggtgaaggatcttagcacaaaagaatgt
ttacacagaaatttgtaaattcacaagactttggcatttaagggttgtga
gttgctgattttatgaggttgtaaagggatattgtaacttttcttgctag
acacaggcaggacatgaagttcctaagggatttctaaattgataaagcag
agcttgtgagctagcaaaagagataaaatgccaggagcctcctgacctag
aatgtgttaaaggaagacaccacaggtgtgcttaagactgatgggtcctc
cagaatattctagccctctactatactgatgcttgtgatactgtaaaagg
tcctaaacctttctcattcaatctgagattaaacccaattgcctttagtt
ggaatttaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_81503008_81504174
seq2: B6Ng01-253F19.g_64_1225

seq1  GAATTCCCATGGTACCTGGACTGATTTCAGCTAATTGCCATAGCTGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGGTACCTGGACTGATTTCAGCTAATTGCCATAGCTGATTC  50

seq1  TTCATACGTCTCAACATATAGTAGACCTGTATCTATGAAATCATTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACGTCTCAACATATAGTAGACCTGTATCTATGAAATCATTTATTG  100

seq1  AATTAGCCTCAAAATGTGCCAAAAGATATATTAGCTTTTTACTCCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCCTCAAAATGTGCCAAAAGATATATTAGCTTTTTACTCCCTTGA  150

seq1  TAGTTTTCAGTGAATAAATCAAAAGTGAGGAAATTCAGAGGGCTGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCAGTGAATAAATCAAAAGTGAGGAAATTCAGAGGGCTGAGAAG  200

seq1  ACTCAATGTGCTTCAGGAAATTTTTGAAATGCAGTAAATTCTTCACTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGTGCTTCAGGAAATTTTTGAAATGCAGTAAATTCTTCACTAAT  250

seq1  TAAGGGGGCTAACTTCTTCACAAAATAAGTAATGAGTTCAAGGGAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGGCTAACTTCTTCACAAAATAAGTAATGAGTTCAAGGGAGAAAA  300

seq1  TGTAGTAGCAGGAAAGTCATTTTAGATTACAGTGCAAAATATTGTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGCAGGAAAGTCATTTTAGATTACAGTGCAAAATATTGTGTGTT  350

seq1  TAGACTGTGAACCAAATATGCCTTGTCTTGAGGTTTTGAGTTTTGATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTGAACCAAATATGCCTTGTCTTGAGGTTTTGAGTTTTGATTTA  400

seq1  TTTAATTTTTAATTACTGAACATCTCTTATGTGTCAAATATAAATCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTAATTACTGAACATCTCTTATGTGTCAAATATAAATCCAGA  450

seq1  TACTGTAAAGAAAAGAACATTGTCTGCAGTTCAAAAACTTGTGTCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAAGAAAAGAACATTGTCTGCAGTTCAAAAACTTGTGTCTTAAT  500

seq1  TAGGAGACTAAAAGTCACCATAAGCTGCTGAAATACTGAACACTCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACTAAAAGTCACCATAAGCTGCTGAAATACTGAACACTCTGACA  550

seq1  AATGTTCTTGACTGCTTTCATGATTGAATGGGTAGCATCGAGCATATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTGACTGCTTTCATGATTGAATGGGTAGCATCGAGCATATGTG  600

seq1  TGCAAAGTGATAAAGCCATAAGATTACTAGGCATTCAGCTCTATGGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTGATAAAGCCATAAGATTACTAGGCATTCAGCTCTATGGAATT  650

seq1  TCCCTTATAAATATGTCAGTTGTTAACCGGAATGCCTTCAAAGTTGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATAAATATGTCAGTTGTTAACCGGAATGCCTTCAAAGTTGTTAT  700

seq1  GAATTCTTGGCCATCTGGGAAAAAAAAAACTGGCTGTGAGGCAGCAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCCATCTGGGAAAAAAAAAACTGGCTGTGAGGCAGCAATGT  750

seq1  ACAAATAACACACAGCAGAGATGGTGAAGGATCTTAGCACAAAAGAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACACACAGCAGAGATGGTGAAGGATCTTAGCACAAAAGAATGT  800

seq1  TTACACAGAAATTTGTAAATTCACAAGACTTTGGCATTTAAGGGTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGAAATTTGTAAATTCACAAGACTTTGGCATTTAAGGGTTGTGA  850

seq1  GTTGCTGATTTTATGAGGTTGT-AAGGGATATTGTAACTTTTCTTGCTAG  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTGCTGATTTTATGAGGTTGTAAAGGGATATTGTAACTTTTCTTGCTAG  900

seq1  ACACAGGCAGGACATGAAGTTCCTAAGGGATTTCTAAAATTGATAAAGCA  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACACAGGCAGGACATGAAGTTCCTAAGGGATTTCT-AAATTGATAAAGCA  949

seq1  GAGCTTGTGAGCTAGCAAAAAGAGATAAAAATGCCAGGAGCCTCCTGACC  999
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  GAGCTTGTGAGCTAGC-AAAAGAGAT-AAAATGCCAGGAGCCTCCTGACC  997

seq1  TAGAATGTGTTAAAGGAAGACA-CACAGGTGTGGCTTTAAAGACTGATGG  1048
      |||||||||||||||||||||| ||||||||| ||||  |||||||||||
seq2  TAGAATGTGTTAAAGGAAGACACCACAGGTGT-GCTT--AAGACTGATGG  1044

seq1  --TCTCCAG-ATATTCTAGCCCTCTAACTATACTGAATGCTTGTTGATAA  1095
         |||||| ||||||||||||||| ||||||||| ||||||| ||||| 
seq2  GTCCTCCAGAATATTCTAGCCCTCT-ACTATACTG-ATGCTTG-TGATA-  1090

seq1  CTTGTAAAAAGGTCCTAAAAACTTTCTCATTCATTCTGAAGATTAAAAAC  1145
        ||| |||||||||| ||| |||||||||||| |||| ||||||||  |
seq2  -CTGT-AAAAGGTCCT-AAACCTTTCTCATTCAATCTG-AGATTAAACCC  1136

seq1  CAATG-CTTTAGTTG---ATTAACAC  1167
       | || |||||||||    |||||||
seq2  AATTGCCTTTAGTTGGAATTTAACAC  1162


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