BAC Information

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BAC

Clone NameB6Ng01-257B05
Chromosome16 (Build37)
Map Location 92,234,887 - 92,329,826
singlet/doubletdoublet
Overlap geneKcne2, 1190017O12Rik, 4930563D23Rik
Upstream geneOlig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
Downstream geneKcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257B05.bB6Ng01-257B05.g
ACCGA062867GA062868
length1,0851,112
definitionB6Ng01-257B05.b B6Ng01-257B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,328,745 - 92,329,826)(92,234,887 - 92,235,990)
sequence
gaattcacgccctctgcaagaataaaaagcattcttatctgctgagctat
ctctctggtctcctgcactttggttttctggcgtgcaaacacgttcaaac
aattttaaatatggctatatttgatgatgttatatcaactattcaaaaac
ttagtgttttaaactgttacattttgaaaagaaggtgctgtgtgtgtgtt
ggtgggttcttgcctatcggacacagaaagcttccgtaagctgtccccgg
cactcacctcttgatggtttggttatgtgtctaccttctgaacctaggca
ctttgtctcatctgggcctttctgtttcatagcaatcaagtggacacccc
aagaagccttcaaccagacccagtccagctccctcctgcgtgaccccgtc
gaggggaagaacagcactggctctgccaggaccctgaggctgctggatgc
aaccagcgccgcctggtacatcctcaccatcatcggcatctacgggctga
tcttcctcttccggctggccagcaacatcctcgggaaaactaagaggtcc
ttggaggatgtttactactcaagcttaacttctgagctcaaaaggaaagg
gtttcagagcaagatggcccattgtccgtcactgatcatcagcaacgcag
ccgcccttcagcctcagcagctcagcctagagccgacgtgtgaagacggc
aggctccacgtgggagcccaggtggtcccctgaaggtcaaggccgccaga
ccagtactgggaggccgcagaaggtttgcaggtgggacagttttggggcc
tgtgatcttgagaaaagaacccagtcctggaatagggcagggtaagcatc
tctggccatggacacttggggctatcagagtgtgaacaaaccgcaagcag
cttgtcttcagttgacgacggggtgtcagcagtcccagcttgctgtcttc
agtgatggagtcttcacaggtgaaggagtagtgacagtcatcagatgctg
ttgccaggtgtttctggtgtgattcagaggagacagttgaatccacaggt
tggaagggatccagggttctcagatggaatcagga
gaattcaaaatgtaattctagtgtttactggcctgtgacctttggcttgt
gatctgagaactgacgtctgtaaggctggagagtaagaacaatcgtgttt
accatggtgataatgaaaaggaatgtatgtgcagagcagagccaagttgg
tgttaatgtgtaaacagagggaaactggtgacaggaatgaggatggcctg
actgtaggcactgggcatctgagagtccacagaatctgattagctgtgag
tcccgagataaacctttggcagcatgaaagagggattacagcggtaggct
tctgagagacaggacagttaggagacagaggcgagaggcacagaggccag
ttgagatggtcgtaaacagcacggtgtgaaaagcctctggagatgcagct
tagacacctcattctcccacatcctgagacatccctcatatgtgtgggtc
acagcaaaggaagctgcccaatggccagcaagggaaatatgggcgccagc
cagagttttgattaaagtggcaggtataccttttatgtcacctctcactg
ttcagatgacccaaatatgcagaagaattctgatccaaacacctaattat
tacagacaacgtagccatttcctccctacgttgcttttggtcgtggtatt
tctcacagcaacagaaagcaaacttgaacagcctggagcgtttgaatgga
gtagaaagacagcgggtgtgcgtctccctgacctttcggtcagccacctg
attttcctttctctaccaagcccctaccacaccttgcttgtgtcacatga
cccctttcctcagccacagttgacagacataggctcaacggcagtttaat
gttttctcatcagggagttggaactttgatcagagaatgaggtcttgagg
acaggccgtgggcttatcttttttagcagcttgttgtgggtaaagacccc
tctacttcctgtaggagagagggcctcaggggaattggtgggtctgcttc
gcttaaaggcagtctcacacccgcttgggagatccagactattatttgtt
ttacctccctgagttactttaccacttgcttactgttcctattaccaaaa
atagaattatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92328745_92329826
seq2: B6Ng01-257B05.b_43_1127 (reverse)

seq1  TCCTGAATCCATCTGAGAACCCTGG-TCCC-TCCAACCTGTGGATTCAAC  48
      |||||| |||||||||||||||||| |||| |||||||||||||||||||
seq2  TCCTGATTCCATCTGAGAACCCTGGATCCCTTCCAACCTGTGGATTCAAC  50

seq1  TGTCTCCTCTG-ATCACACCAGAAACACCTGGCAACAGCATCTGATGACT  97
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCTGAATCACACCAGAAACACCTGGCAACAGCATCTGATGACT  100

seq1  GTCACTACTCCTTCACCTGTTGAGACTCCATCACCTGAAGACAGC-AGCT  146
      ||||||||||||||||||||  ||||||||||| ||||||||||| ||||
seq2  GTCACTACTCCTTCACCTGTGAAGACTCCATCA-CTGAAGACAGCAAGCT  149

seq1  GGGGACTGCTGACACCCCGTCGTCACCTGAAGACAAGCTGCTTGCGGTTT  196
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -GGGACTGCTGACACCCCGTCGTCAACTGAAGACAAGCTGCTTGCGGTTT  198

seq1  GTTCACACTCTGATAGCCCCAAGTGTCCATGGCCAGAGATGCTTACCCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTCTGATAGCCCCAAGTGTCCATGGCCAGAGATGCTTACCCTG  248

seq1  CCCTATTCCAGGACTGGGTTCTTTTCTCAAGATCACAGGCCCC-AAACTG  295
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTATTCCAGGACTGGGTTCTTTTCTCAAGATCACAGGCCCCAAAACTG  298

seq1  TCCCACCTGCAAACCTTCTGCGGCCTCCCAGTACTGGTCTGGCGGCCTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGCAAACCTTCTGCGGCCTCCCAGTACTGGTCTGGCGGCCTTG  348

seq1  ACCTTCAGGGGACCACCTGGGCTCCCACGTGGAGCCTGCCGTCTTCACAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGGGGACCACCTGGGCTCCCACGTGGAGCCTGCCGTCTTCACAC  398

seq1  GTCGGCTCTAGGCTGAGCTGCTGAGGCTGAAGGGCGGCTGCGTTGCTGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCTCTAGGCTGAGCTGCTGAGGCTGAAGGGCGGCTGCGTTGCTGAT  448

seq1  GATCAGTGACGGACAATGGGCCATCTTGCTCTGAAACCCTTTCCTTTTGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGACGGACAATGGGCCATCTTGCTCTGAAACCCTTTCCTTTTGA  498

seq1  GCTCAGAAGTTAAGCTTGAGTAGTAAACATCCTCCAAGGACCTCTTAGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAGTTAAGCTTGAGTAGTAAACATCCTCCAAGGACCTCTTAGTT  548

seq1  TTCCCGAGGATGTTGCTGGCCAGCCGGAAGAGGAAGATCAGCCCGTAGAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAGGATGTTGCTGGCCAGCCGGAAGAGGAAGATCAGCCCGTAGAT  598

seq1  GCCGATGATGGTGAGGATGTACCAGGCGGCGCTGGTTGCATCCAGCAGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATGATGGTGAGGATGTACCAGGCGGCGCTGGTTGCATCCAGCAGCC  648

seq1  TCAGGGTCCTGGCAGAGCCAGTGCTGTTCTTCCCCTCGACGGGGTCACGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCCTGGCAGAGCCAGTGCTGTTCTTCCCCTCGACGGGGTCACGC  698

seq1  AGGAGGGAGCTGGACTGGGTCTGGTTGAAGGCTTCTTGGGGTGTCCACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGCTGGACTGGGTCTGGTTGAAGGCTTCTTGGGGTGTCCACTT  748

seq1  GATTGCTATGAAACAGAAAGGCCCAGATGAGACAAAGTGCCTAGGTTCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTATGAAACAGAAAGGCCCAGATGAGACAAAGTGCCTAGGTTCAG  798

seq1  AAGGTAGACACATAACCAAACCATCAAGAGGTGAGTGCCGGGGACAGCTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGACACATAACCAAACCATCAAGAGGTGAGTGCCGGGGACAGCTT  848

seq1  ACGGAAGCTTTCTGTGTCCGATAGGCAAGAACCCACCAACACACACACAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGCTTTCTGTGTCCGATAGGCAAGAACCCACCAACACACACACAG  898

seq1  CACCTTCTTTTCAAAATGTAACAGTTTAAAACACTAAGTTTTTGAATAGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTTTTCAAAATGTAACAGTTTAAAACACTAAGTTTTTGAATAGT  948

seq1  TGATATAACATCATCAAATATAGCCATATTTAAAATTGTTTGAACGTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAACATCATCAAATATAGCCATATTTAAAATTGTTTGAACGTGTT  998

seq1  TGCACGCCAGAAAACCAAAGTGCAGGAGACCAGAGAGATAGCTCAGCAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCCAGAAAACCAAAGTGCAGGAGACCAGAGAGATAGCTCAGCAGA  1048

seq1  TAAGAATGCTTTTTATTCTTGCAGAGGGCGTGAATTC  1082
      |||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGCTTTTTATTCTTGCAGAGGGCGTGAATTC  1085

seq1: chr16_92234887_92235990
seq2: B6Ng01-257B05.g_68_1179

seq1  GAATTCAAAATGTAATTCTAGTGTTTACTGGCCTGTGACCTTTGGCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATGTAATTCTAGTGTTTACTGGCCTGTGACCTTTGGCTTGT  50

seq1  GATCTGAGAACTGACGTCTGTAAGGCTGGAGAGTAAGAACAATCGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGAACTGACGTCTGTAAGGCTGGAGAGTAAGAACAATCGTGTTT  100

seq1  ACCATGGTGATAATGAAAAGGAATGTATGTGCAGAGCAGAGCCAAGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTGATAATGAAAAGGAATGTATGTGCAGAGCAGAGCCAAGTTGG  150

seq1  TGTTAATGTGTAAACAGAGGGAAACTGGTGACAGGAATGAGGATGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGTGTAAACAGAGGGAAACTGGTGACAGGAATGAGGATGGCCTG  200

seq1  ACTGTAGGCACTGGGCATCTGAGAGTCCACAGAATCTGATTAGCTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGCACTGGGCATCTGAGAGTCCACAGAATCTGATTAGCTGTGAG  250

seq1  TCCCGAGATAAACCTTTGGCAGCATGAAAGAGGGATTACAGCGGTAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGATAAACCTTTGGCAGCATGAAAGAGGGATTACAGCGGTAGGCT  300

seq1  TCTGAGAGACAGGACAGTTAGGAGACAGAGGCGAGAGGCACAGAGGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGACAGGACAGTTAGGAGACAGAGGCGAGAGGCACAGAGGCCAG  350

seq1  TTGAGATGGTCGTAAACAGCACGGTGTGAAAAGCCTCTGGAGATGCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGTCGTAAACAGCACGGTGTGAAAAGCCTCTGGAGATGCAGCT  400

seq1  TAGACACCTCATTCTCCCACATCCTGAGACATCCCTCATATGTGTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCTCATTCTCCCACATCCTGAGACATCCCTCATATGTGTGGGTC  450

seq1  ACAGCAAAGGAAGCTGCCCAATGGCCAGCAAGGGAAATATGGGCGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAGGAAGCTGCCCAATGGCCAGCAAGGGAAATATGGGCGCCAGC  500

seq1  CAGAGTTTTGATTAAAGTGGCAGGTATACCTTTTATGTCACCTCTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTTGATTAAAGTGGCAGGTATACCTTTTATGTCACCTCTCACTG  550

seq1  TTCAGATGACCCAAATATGCAGAAGAATTCTGATCCAAACACCTAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGACCCAAATATGCAGAAGAATTCTGATCCAAACACCTAATTAT  600

seq1  TACAGACAACGTAGCCATTTCCTCCCTACGTTGCTTTTGGTCGTGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAACGTAGCCATTTCCTCCCTACGTTGCTTTTGGTCGTGGTATT  650

seq1  TCTCACAGCAACAGAAAGCAAACTTGAACAGCCTGGAGCGTTTGAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGCAACAGAAAGCAAACTTGAACAGCCTGGAGCGTTTGAATGGA  700

seq1  GTAGAAAGACAGCGGGTGTGCGTCTCCCTGACCTTTCGGTCAGCCACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGACAGCGGGTGTGCGTCTCCCTGACCTTTCGGTCAGCCACCTG  750

seq1  ATTTTCCTTTCTCTACCAAGCCCCTACCACACCTTGCTTGTGTCACATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTCTCTACCAAGCCCCTACCACACCTTGCTTGTGTCACATGA  800

seq1  -CCCTTTCCTCAGGCCACAGTTGACAGACATAGGCTCAAACGGCAGTTTA  849
       ||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  CCCCTTTCCTCA-GCCACAGTTGACAGACATAGGCTC-AACGGCAGTTTA  848

seq1  ATGTTTTCTCATCAGGGAGTTGGAACTTTGATCAGAGAATGAGGTCTTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTCATCAGGGAGTTGGAACTTTGATCAGAGAATGAGGTCTTGA  898

seq1  GGACAGGCCGTGGGCTTATC-TTTTTAGCAGCT--GTGTGGGTAAAGA-C  945
      |||||||||||||||||||| ||||||||||||   |||||||||||| |
seq2  GGACAGGCCGTGGGCTTATCTTTTTTAGCAGCTTGTTGTGGGTAAAGACC  948

seq1  CCTCTACTCCCTGTAGGAGAGAGGGCCTCAGGGGAAATTGTGGGTCTGC-  994
      |||||||| ||||||||||||||||||||||||||| | |||||||||| 
seq2  CCTCTACTTCCTGTAGGAGAGAGGGCCTCAGGGGAATTGGTGGGTCTGCT  998

seq1  TCGCCTAAAGGGCAGTCTCACA-CCGCTTGGGAGAATCCAGACTATTAAT  1043
      |||| |||| |||||||||||| ||||||||||| ||||||||||||| |
seq2  TCGCTTAAA-GGCAGTCTCACACCCGCTTGGGAG-ATCCAGACTATTATT  1046

seq1  TGTTTTACCT--CTGAGTTAC-TTAACAC-TGCTTACTGTTTCTTATAAC  1089
      ||||||||||  ||||||||| ||| ||| ||||||||||| ||  || |
seq2  TGTTTTACCTCCCTGAGTTACTTTACCACTTGCTTACTGTTCCTATTACC  1096

seq1  CAAAATA-AATTATGG  1104
       |||||| ||||||||
seq2  AAAAATAGAATTATGG  1112