BAC Information

Click to search

BAC

Clone NameB6Ng01-262B23
Chromosome16 (Build37)
Map Location 44,376,979 - 44,497,287
singlet/doubletdoublet
Overlap geneCcdc52, Wdr52, Boc
Upstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1
Downstream geneLOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B23.bB6Ng01-262B23.g
ACCGA066622GA066623
length340473
definitionB6Ng01-262B23.b B6Ng01-262B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,376,979 - 44,377,318)(44,496,809 - 44,497,287)
sequence
ccacaggaagagttgcctgttaaactatctcaggggccaacccccacaga
aaacttgaatctggccaataatttcccaacccatattttcgagccagctg
tgatgctaacaccacccaggcagaagagcaactcagaattctctcctctc
caggatggtaagcatgcttctcctatatttatatggaagctgtgattttt
tttttcctcttcacttatatgataatgtatatatgtgtgtatgttgtatg
tgtgtgtgtgtatgtatatatgtaaagtgagttgcaatgcatgtgtacat
tacatacatacacgcacaagcactcacatgcattttttag

agaggtttcagggcagagccgtagctcttctgagtcagagcccatagtga
ggcagaacttcacggcagtttctgtgatggaaactatagggcagagagac
ggtgtggggggaggggaccgagggaaagaataaccttcaaaaatatgcct
ctgcggcctacttcctccagcgaggcccaacttcccccaaaatcgcacta
gcatctggggaccaaccaggggacaatgcctaaaggggactgttggtccc
ctcattaatgccatcacattagtgccagtgagatgcttcaataggtaaaa
gtgcttcctgctaagcctgaagagccaaattcaagctccaggacccacat
tcacagtgtgtggcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtaaacgtcagcatcatggaaagacctcgttttccttctggtaagataag
ggcaccagtcttctcttctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_44376979_44377318
seq2: B6Ng01-262B23.b_51_390

seq1  CCACAGGAAGAGTTGCCTGTTAAACTATCTCAGGGGCCAACCCCCACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAAGAGTTGCCTGTTAAACTATCTCAGGGGCCAACCCCCACAGA  50

seq1  AAACTTGAATCTGGCCAATAATTTCCCAACCCATATTTTCGAGCCAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAATCTGGCCAATAATTTCCCAACCCATATTTTCGAGCCAGCTG  100

seq1  TGATGCTAACACCACCCAGGCAGAAGAGCAACTCAGAATTCTCTCCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAACACCACCCAGGCAGAAGAGCAACTCAGAATTCTCTCCTCTC  150

seq1  CAGGATGGTAAGCATGCTTCTCCTATATTTATATGGAAGCTGTGATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGTAAGCATGCTTCTCCTATATTTATATGGAAGCTGTGATTTTT  200

seq1  TTTTTCCTCTTCACTTATATGATAATGTATATATGTGTGTATGTTGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTTCACTTATATGATAATGTATATATGTGTGTATGTTGTATG  250

seq1  TGTGTGTGTGTATGTATATATGTAAAGTGAGTTGTAATGTATGTGTACAT  300
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TGTGTGTGTGTATGTATATATGTAAAGTGAGTTGCAATGCATGTGTACAT  300

seq1  TACATACATACACGCACATGCACACACATGCATTTTTTAG  340
      |||||||||||||||||| |||| ||||||||||||||||
seq2  TACATACATACACGCACAAGCACTCACATGCATTTTTTAG  340


seq1: chr16_44496809_44497287
seq2: B6Ng01-262B23.g_65_543 (reverse)

seq1  CTGCAGAAGAGAAGGCTGGTGCCCTTATCCTGCCAGAAGGAAAACGAGGT  50
      |||||||||||||| |||||||||||||| | ||||||||||||||||||
seq2  CTGCAGAAGAGAAGACTGGTGCCCTTATCTTACCAGAAGGAAAACGAGGT  50

seq1  CTTTCCACGATGCTGAGGTTTATACACACACACACACACACACACACACA  100
      ||||||| |||||||| ||||| |||||||||||||||||||||||||||
seq2  CTTTCCATGATGCTGACGTTTACACACACACACACACACACACACACACA  100

seq1  CACACACCTGCCACACACTGTGAATGTGGGTCCTGGAGCTTGAATTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCTGCCACACACTGTGAATGTGGGTCCTGGAGCTTGAATTTGGC  150

seq1  TCTTCAGGCTTAGCAGGAAGCACTTTTACCTATTGAAGCATCTCACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGCTTAGCAGGAAGCACTTTTACCTATTGAAGCATCTCACTGGC  200

seq1  ACTAATGTGATGGCATTAATGAGGGGACCAACAGTCCCCTTTAGGCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTGATGGCATTAATGAGGGGACCAACAGTCCCCTTTAGGCATTG  250

seq1  TCCCCTGGTTGGTCCCCAGATGCTAGTGCGATTTTGGGGGAAGTTGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGTTGGTCCCCAGATGCTAGTGCGATTTTGGGGGAAGTTGGGCC  300

seq1  TCGCTGGAGGAAGTAGGCCGCAGAGGCATATTTTTGAAGGTTATTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGAGGAAGTAGGCCGCAGAGGCATATTTTTGAAGGTTATTCTTTC  350

seq1  CCTCGGTCCCCTCCCCCCACACCGTCTCTCTGCCCTATAGTTTCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGTCCCCTCCCCCCACACCGTCTCTCTGCCCTATAGTTTCCATCAC  400

seq1  AGAAACTGCCGTGAAGTTCTGCCTCACTATGGGCTCTGACTCAGAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCCGTGAAGTTCTGCCTCACTATGGGCTCTGACTCAGAAGAGC  450

seq1  TACGGCTCTGCCCTGAAACCTCTGAATTC  479
      |||||||||||||||||||||||||||||
seq2  TACGGCTCTGCCCTGAAACCTCTGAATTC  479


| Home | SequenceCutter | Blast | Download |