BAC Information

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BAC

Clone NameB6Ng01-269A24
Chromosome16 (Build37)
Map Location 5,945,849 - 6,097,593
singlet/doubletdoublet
Overlap geneA2bp1, LOC100042445
Upstream geneAnks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269A24.bB6Ng01-269A24.g
ACCGA071759GA071760
length1,143452
definitionB6Ng01-269A24.b B6Ng01-269A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,945,849 - 5,946,983)(6,097,136 - 6,097,593)
sequence
ttatctgtaaagagtgatcataagggccctgcctctgactcactcaacca
gaacatttacctccaagttagtttgtttctcctctttccagcctggctgc
atcagatggttcatgcctattttccttggaaacactgcagcagccctaga
acaatatggaccatgccatcactaagggctctgcacagatgcctttttgt
cacatgtgttgattaccgagaacagtgtgattaatctccctctctgatgt
ggcttagtgatctccatttgtctattagcagaaattctctagatgagttt
ttatagtggtacataaacacattaatcagtcacttctccattcaatagcc
gtccatccttaactttatccagccatccacatatccactaatctcttcat
ctagctgcccctacttcctcttttagctatccatctatgatggtttgtat
attcttgggctagggagtggcagcatttggaggtgtggccttgtccaggt
gtgacctggttggagtaagtgtgtcactgtgggtgtgagcttaagatcct
cactctagttgcctggaagtcagtcttccactagcagcctttggatgaag
acgtagaactctcagctctgcctgtgccatgcctgcctggatactgccat
gctcccaccttgatgataatggactgaacctctgaacctgtaagccagcc
ccaagtaaatgttttttataagacttgccttggtcatggtgtctgttcac
agcagtaaaactctaactaagacaccatccatctgtgtatagtcacatcc
acctgtctgttcatctatccatccttctgtaatccatttttctatccttc
cattccttcatcttccctctatcatccatgtattcattcgtccatccatc
tcattttcttctacaatctatgagggactttgaacaactggggaggtgtt
gtgcaagagtgaccaagtgtgcttgtattttatttacagatattttcttg
gaaagattttgagtcctccttgctttctgacgacaacttgaaggcctggg
tttaagtgtctgcttattgtggtgtagcacatggaataaaatacatgtat
agaatttagtccacatgatctggcatgtgtgacactgtccttc

acgataaagctcgctgtcaactgacagtaacatcaatgtcacagcacaaa
gggacgggtgtccctcaatagaggatcaaccctgagccattaaccagtgc
tgggcagctctgccatcttggtggacagttactctcaggacaagtgtgtg
agcagagccagaactgtcagagttgaggaaggcatttctcttatctctgt
ggttatgtttccatccttccttgctcccctcatttctctgtctgtcctac
tccatctctcttcaattaaaataaaaatgtcccccagaggtaactaaaag
gaaataaaaccctccaagtatctttgctactagaacgccactcactgtag
acttccaggattctggaacgtttgcctttgcttcccctgtcccctgtccc
ctttctctctctctctctctctctctctctctctctctctctctctctct
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5945849_5946983
seq2: B6Ng01-269A24.b_62_1204

seq1  TTATCTGTAAAGAGTGATCATAAGGGCCCTGCCTCTGACTCACTCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAAAGAGTGATCATAAGGGCCCTGCCTCTGACTCACTCAACCA  50

seq1  GAACATTTACCTCCAAGTTAGTTTGTTTCTCCTCTTTCCAGCCTGGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTACCTCCAAGTTAGTTTGTTTCTCCTCTTTCCAGCCTGGCTGC  100

seq1  ATCAGATGGTTCATGCCTATTTTCCTTGGAAACACTGCAGCAGCCCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGGTTCATGCCTATTTTCCTTGGAAACACTGCAGCAGCCCTAGA  150

seq1  ACAATATGGACCATGCCATCACTAAGGGCTCTGCACAGATGCCTTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGGACCATGCCATCACTAAGGGCTCTGCACAGATGCCTTTTTGT  200

seq1  CACATGTGTTGATTACCGAGAACAGTGTGATTAATCTCCCTCTCTGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTTGATTACCGAGAACAGTGTGATTAATCTCCCTCTCTGATGT  250

seq1  GGCTTAGTGATCTCCATTTGTCTATTAGCAGAAATTCTCTAGATGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTGATCTCCATTTGTCTATTAGCAGAAATTCTCTAGATGAGTTT  300

seq1  TTATAGTGGTACATAAACACATTAATCAGTCACTTCTCCATTCAATAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGGTACATAAACACATTAATCAGTCACTTCTCCATTCAATAGCC  350

seq1  GTCCATCCTTAACTTTATCCAGCCATCCACATATCCACTAATCTCTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCTTAACTTTATCCAGCCATCCACATATCCACTAATCTCTTCAT  400

seq1  CTAGCTGCCCCTACTTCCTCTTTTAGCTATCCATCTATGATGGTTTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCCCCTACTTCCTCTTTTAGCTATCCATCTATGATGGTTTGTAT  450

seq1  ATTCTTGGGCTAGGGAGTGGCAGCATTTGGAGGTGTGGCCTTGTCCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGGCTAGGGAGTGGCAGCATTTGGAGGTGTGGCCTTGTCCAGGT  500

seq1  GTGACCTGGTTGGAGTAAGTGTGTCACTGTGGGTGTGAGCTTAAGATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGGTTGGAGTAAGTGTGTCACTGTGGGTGTGAGCTTAAGATCCT  550

seq1  CACTCTAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGATGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTTTGGATGAAG  600

seq1  ACGTAGAACTCTCAGCTCTGCCTGTGCCATGCCTGCCTGGATACTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGAACTCTCAGCTCTGCCTGTGCCATGCCTGCCTGGATACTGCCAT  650

seq1  GCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCC  700

seq1  CCAAGTAAATGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAAATGTTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCAC  750

seq1  AGCAGTAAAACTCTAACTAAGACACCATCCATCTGTGTATAGTCACATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAACTCTAACTAAGACACCATCCATCTGTGTATAGTCACATCC  800

seq1  ACCTGTCTGTTCATCTATCCATCCTTCTGTAATCCATTTTTCTATCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTGTTCATCTATCCATCCTTCTGTAATCCATTTTTCTATCCTTC  850

seq1  CATTCCTTCATCTTCCCTCTATCATCCATGTATTCATTCGTCCATCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCATCTTCCCTCTATCATCCATGTATTCATTCGTCCATCCATC  900

seq1  TCATTTTCTTCTACAATCTATGAGGGACTTTGAACAACT-GGGAGGTGTT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCATTTTCTTCTACAATCTATGAGGGACTTTGAACAACTGGGGAGGTGTT  950

seq1  GTGC-AGAGTGACCAAGTGTGCTTGTATTTTAATTACAGATATTT--CTG  996
      |||| ||||||||||||||||||||||||||| ||||||||||||   ||
seq2  GTGCAAGAGTGACCAAGTGTGCTTGTATTTTATTTACAGATATTTTCTTG  1000

seq1  GAAGGATCTTGAGT-CTCCTGCTTTTCTGACAGAC-ACCTGAAGG-CTGG  1043
      ||| ||| |||||| |||||   |||||||| ||| || |||||| ||||
seq2  GAAAGATTTTGAGTCCTCCTTGCTTTCTGAC-GACAACTTGAAGGCCTGG  1049

seq1  G-TTAAGTGTCTGC-TATTGTGGTGTAGCACATTGATAAAAATACATGGA  1091
      | |||||||||||| |||||||||||||||||| ||  |||||||||| |
seq2  GTTTAAGTGTCTGCTTATTGTGGTGTAGCACATGGAATAAAATACATGTA  1099

seq1  TAGA--TTAGT-CACATGATCTGGGCAGGTGTGAACACTGTCGCTTC  1135
      ||||  ||||| |||||||||| |||| ||||| |||||||| ||||
seq2  TAGAATTTAGTCCACATGATCT-GGCATGTGTG-ACACTGTC-CTTC  1143


seq1: chr16_6097136_6097593
seq2: B6Ng01-269A24.g_69_526 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  50

seq1  AGGGGACAGGGGACAGGGGAAGCAAAGGCAAACGTTCCAGAATCCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACAGGGGACAGGGGAAGCAAAGGCAAACGTTCCAGAATCCTGGAA  100

seq1  GTCTACAGTGAGTGGCGTTCTAGTAGCAAAGATACTTGGAGGGTTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGTGAGTGGCGTTCTAGTAGCAAAGATACTTGGAGGGTTTTATT  150

seq1  TCCTTTTAGTTACCTCTGGGGGACATTTTTATTTTAATTGAAGAGAGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAGTTACCTCTGGGGGACATTTTTATTTTAATTGAAGAGAGATG  200

seq1  GAGTAGGACAGACAGAGAAATGAGGGGAGCAAGGAAGGATGGAAACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGACAGACAGAGAAATGAGGGGAGCAAGGAAGGATGGAAACATAA  250

seq1  CCACAGAGATAAGAGAAATGCCTTCCTCAACTCTGACAGTTCTGGCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGATAAGAGAAATGCCTTCCTCAACTCTGACAGTTCTGGCTCTG  300

seq1  CTCACACACTTGTCCTGAGAGTAACTGTCCACCAAGATGGCAGAGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACTTGTCCTGAGAGTAACTGTCCACCAAGATGGCAGAGCTGCC  350

seq1  CAGCACTGGTTAATGGCTCAGGGTTGATCCTCTATTGAGGGACACCCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGTTAATGGCTCAGGGTTGATCCTCTATTGAGGGACACCCGTC  400

seq1  CCTTTGTGCTGTGACATTGATGTTACTGTCAGTTGACAGCGAGCTTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGCTGTGACATTGATGTTACTGTCAGTTGACAGCGAGCTTTATC  450

seq1  GTGAATTC  458
      ||||||||
seq2  GTGAATTC  458


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