BAC Information

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BAC

Clone NameB6Ng01-271B16
Chromosome16 (Build37)
Map Location 24,868,892 - 24,981,184
singlet/doubletdoublet
Overlap geneLpp
Upstream geneSst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, A730098P11Rik
Downstream gene5430420C16Rik, Trp63, LOC100043571, Leprel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271B16.bB6Ng01-271B16.g
ACCGA073275GA073276
length1,083324
definitionB6Ng01-271B16.b B6Ng01-271B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,980,101 - 24,981,184)(24,868,892 - 24,869,215)
sequence
gaattcctgaggcatgggttgcaattttaaacatgcacaagtaattaaac
aggtttttttttttttttgctctaaatgttaaaattaaaactgtcagact
agaaaatcatcatgtcataaagattaaaaaaaaaagaaaaagacacggaa
gagctggggatgctggggtgccagggcacatgccgagcacatgaggccct
agttcaactcccagtactatataaaagagataaaaagatatttgtggagt
ttaaaaaatttaaagtgactatacttctagaacggtgttagctatagagg
gacctttatattattatttatacctttctgtaatatttaaggtattccat
aatttaaaggtatatatctgtagaagatttaaagaaagctttgagaaatc
tcattctgagatactgactttacaataatggccaactgcaactgcaaagc
gaggtgtctcctcttaacgaagcgaactggctccagttggcaagcaagtg
tttcactggctaataagagttcgcataaagattccaggcaggcattccgc
atatttttacctcagaaagacaatttggttttcagcgattgtctttgaaa
gtgtggtgtgaatgtcacgttgatgataggaaaatgtctcctgcagtatg
tacttgagttacagaggattgtaagaataataaactctggtttcacaatc
tttcccagcttttttttctcttttttaaagaagatgaaacatggtcctat
aatttcattttatgtgtcccgatttgcaattttcacgcaaaagagattta
ggtttgggtcactataaagtgaaagaaagaaagataagaatttgattcat
tttaatacttatctttctgaagataaatattaattgcagtaaccatgctt
atatattagtgaagtttcacagtgctttaaaggatgaagagttggataga
tttataaatgtaccaaaagcaagcctgacagtcttatatccagagagtgt
ggtgagctaactcctcaggtgggatgtggaaatacaacgggcttcagaat
acaccttagatctgccttctttagccacagtgg
tttgtgataacggcattgattgagatcctcatgaagtacataaataaatg
agcagtttgtgttggaagcctaactccaaagcttggggttgatattagac
aactacatgattatctttagcacacactgaattaacttgattgcctgtta
atttttctgttagtaatttggtgacagaagaagaggcatacaccttgggg
taggaagaaaggcttcatgaacaacttaatgggaaaggcccaaaactgta
gacaggtgtcctttattagctttctgtggctctgacaaagaccatgaccc
caagcagcatggggaggaaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24980101_24981184
seq2: B6Ng01-271B16.b_44_1126 (reverse)

seq1  CCACTGT-GCTAAAG-AGGCAGAATTCT-AGGTGTATCTGGAAGGCCCGT  47
      ||||||| ||||||| |||||||  ||| ||||||||   ||| ||||||
seq2  CCACTGTGGCTAAAGAAGGCAGA--TCTAAGGTGTATTCTGAA-GCCCGT  47

seq1  TGTATTTCCACAATCCCACCCTGA-GAGTTAGCTCACCACACTCTCTGGA  96
      ||||||||||| |||||| ||||| |||||||||||||||||||||||||
seq2  TGTATTTCCAC-ATCCCA-CCTGAGGAGTTAGCTCACCACACTCTCTGGA  95

seq1  TATAAGACTGTCAGGCTTGCTTTTGGTACATTTATAAATCTATCCAACTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTGTCAGGCTTGCTTTTGGTACATTTATAAATCTATCCAACTC  145

seq1  TTCATCC-TTAAAGCACTGTGAAACTTCACCTAATATATAAGCATGGTTA  195
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCATCCTTTAAAGCACTGTGAAACTTCA-CTAATATATAAGCATGGTTA  194

seq1  CTGCAATTAATATTTATCTTCAGAAAGATAAGTATTAAAATGAATCAAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTAATATTTATCTTCAGAAAGATAAGTATTAAAATGAATCAAAT  244

seq1  TCTTATCTTTCTTTCTTTCACTTTATAGTGACCCAAACCTAAATCTCTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTTTCTTTCTTTCACTTTATAGTGACCCAAACCTAAATCTCTTT  294

seq1  TGCCTGAAAATTGCAAATCGGGACACATAAAATGAAATTATAGGACCATG  345
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGAAAATTGCAAATCGGGACACATAAAATGAAATTATAGGACCATG  344

seq1  TTTCATCTTCTTTAAAAAAGAGAAAAAAAAGCTGGGAAAGATTGTGAAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTTCTTTAAAAAAGAGAAAAAAAAGCTGGGAAAGATTGTGAAAC  394

seq1  CAGAGTTTATTATTCTTACAATCCTCTGTAACTCAAGTACATACTGCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTATTATTCTTACAATCCTCTGTAACTCAAGTACATACTGCAGG  444

seq1  AGACATTTTCCTATCATCAACGTGACATTCACACCACACTTTCAAAGACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTCCTATCATCAACGTGACATTCACACCACACTTTCAAAGACA  494

seq1  ATCGCTGAAAACCAAATTGTCTTTCTGAGGTAAAAATATGCGGAATGCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGAAAACCAAATTGTCTTTCTGAGGTAAAAATATGCGGAATGCCT  544

seq1  GCCTGGAATCTTTATGCGAACTCTTATTAGCCAGTGAAACACTTGCTTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAATCTTTATGCGAACTCTTATTAGCCAGTGAAACACTTGCTTGC  594

seq1  CAACTGGAGCCAGTTCGCTTCGTTAAGAGGAGACACCTCGCTTTGCAGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAGCCAGTTCGCTTCGTTAAGAGGAGACACCTCGCTTTGCAGTT  644

seq1  GCAGTTGGCCATTATTGTAAAGTCAGTATCTCAGAATGAGATTTCTCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGCCATTATTGTAAAGTCAGTATCTCAGAATGAGATTTCTCAAA  694

seq1  GCTTTCTTTAAATCTTCTACAGATATATACCTTTAAATTATGGAATACCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTAAATCTTCTACAGATATATACCTTTAAATTATGGAATACCT  744

seq1  TAAATATTACAGAAAGGTATAAATAATAATATAAAGGTCCCTCTATAGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTACAGAAAGGTATAAATAATAATATAAAGGTCCCTCTATAGCT  794

seq1  AACACCGTTCTAGAAGTATAGTCACTTTAAATTTTTTAAACTCCACAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCGTTCTAGAAGTATAGTCACTTTAAATTTTTTAAACTCCACAAAT  844

seq1  ATCTTTTTATCTCTTTTATATAGTACTGGGAGTTGAACTAGGGCCTCATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTATCTCTTTTATATAGTACTGGGAGTTGAACTAGGGCCTCATG  894

seq1  TGCTCGGCATGTGCCCTGGCACCCCAGCATCCCCAGCTCTTCCGTGTCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGGCATGTGCCCTGGCACCCCAGCATCCCCAGCTCTTCCGTGTCTT  944

seq1  TTTCTTTTTTTTTTAATCTTTATGACATGATGATTTTCTAGTCTGACAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTAATCTTTATGACATGATGATTTTCTAGTCTGACAGT  994

seq1  TTTAATTTTAACATTTAGAGCAAAAAAAAAAAAAAACCTGTTTAATTACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAACATTTAGAGCAAAAAAAAAAAAAAACCTGTTTAATTACT  1044

seq1  TGTGCATGTTTAAAATTGCAACCCATGCCTCAGGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTTTAAAATTGCAACCCATGCCTCAGGAATTC  1083

seq1: chr16_24868892_24869215
seq2: B6Ng01-271B16.g_75_398

seq1  TTTGTGATAACGGCATTGATTGAGATCCTCATGAAGTACATAAATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATAACGGCATTGATTGAGATCCTCATGAAGTACATAAATAAATG  50

seq1  AGCAGTTTGTGTTGGAAGCCTAACTCCAAAGCTTGGGGTTGATATTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTGTGTTGGAAGCCTAACTCCAAAGCTTGGGGTTGATATTAGAC  100

seq1  AACTACATGATTATCTTTAGCACACACTGAATTAACTTGATTGCCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATGATTATCTTTAGCACACACTGAATTAACTTGATTGCCTGTTA  150

seq1  ATTTTTCTGTTAGTAATTTGGTGACAGAAGAAGAGGCATACACCTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTTAGTAATTTGGTGACAGAAGAAGAGGCATACACCTTGGGG  200

seq1  TAGGAAGAAAGGCTTCATGAACAACTTAATGGGAAAGGCCCAAAACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAAAGGCTTCATGAACAACTTAATGGGAAAGGCCCAAAACTGTA  250

seq1  GACAGGTGTCCTTTATTAGCTTTCTGTGGCTCTGACAAAGACCATGACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGTCCTTTATTAGCTTTCTGTGGCTCTGACAAAGACCATGACCC  300

seq1  CAAGCAGCATGGGGAGGAAGGGGG  324
      ||||||||||||||||||||||||
seq2  CAAGCAGCATGGGGAGGAAGGGGG  324