BAC Information

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BAC

Clone NameB6Ng01-272C02
Chromosome16 (Build37)
Map Location 87,285,942 - 87,287,088
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272C02.bB6Ng01-272C02.g
ACCGA074033GA074034
length1,154835
definitionB6Ng01-272C02.b B6Ng01-272C02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtggcatgtgccctttaagtgagacaaggtgtgcagaaaacat
aataaggaaccagacagactctgggtcatgtggacaagacaggaaagcct
ggatctaccactgaaccaatgtgaaggggcaaggttcatgtctgcccagg
agctgcagagcaaacattgccctctgagtactctggtttcagacttttgg
tcagcaaaactttaagagaatgacttctcactaatttaagacatgcagtt
agctgtaactcattatgaaacacctcagcgtccctgtgtttgtaaacgac
ctggaaacttgcaagctttcaacagaacatatgtaaacccattgacctac
cacgtttcatggtgctgtccaattgacagcagaaaatgtgtcatggccta
cacactgtgtgtcaaagtattttggatgtcaaatatttccttaaaggtgt
tttccgctaaaatgcaagactattcaacgaacattccccttcttctaagg
tggaaagtgaagcaataagagtttgcctaaatatggatacatataatcaa
aatcattcaaatgtcacacagtcaggacaacgcagtaaactcagtaggaa
tgctcatgagttgcccacgaggtgagatacttggaagctacgtacgtgaa
cattgaaagcagcagtgtcagtacaactgaatggaagtattcataaaaat
gttgtttggctcagcagataataactaaatatttgggaactggaaggaag
gaaatgtacaagcagtcaaaagccgcaaattccatccaggaaacatggaa
tccacacaacatatcacaggtttgggctctttgtataacacacaatggat
ctgtttcaaattactcaatgacttcagaatccataagtaaccacagggag
atcaataatagatcagcccaagaggagcctctatttttatgtctaagcct
ggaaagggagggttctatgtaaaataaggattcaagtacgaagtatggga
atttccctttatgggccaccaggtaattccatacatgtgttgaatagaac
tatccaacaccttagattttttataagatgcaaatagtgttccttagtct
cacttgaatgatgtagtacctgatggtgttcccaaggataagttctgata
cttc

gaattctggtcaaggtgaggtttcacctgtattacatagcacatcagtag
ttgtaatttgaaagatgatacaagagacgtagacataagtatgttccaga
gggatgtcttgatgaggattcagtctcaagtgtgtggtaaggtagaagac
acacatagcattacctattccttccctagcacagggcacacctataaatg
tatgaagaatgaattgagcccctccccccatgtgggtcaaatatggtgtc
ctgcgtccggcccagggctctggctgctggatgaggctgatgcggggagt
ttggcagcgcgcacccccatggtaggcgaaggctgtgagacgccccagga
ccccgcttcgggggtggggaaggcgcaatctgaagtccacacagaatctc
cgggcctgtacagaggctggggaagaaaggttctcactctcagacatccc
agatgccactgtatgccatggaagagctgagaacaaagtgggagcccgtg
ggtggactgtgacctggggtctaagggaaaaaaggacgggaggagagagc
tctggcagattctcacagggacgagagtccttgtcttgtgcagcggctct
tgggttggtggaagccgtggtggagaatgcagggaggtctcccgggcggg
aggttagatgctggccctttagtggaagacctgctccattgctccagcac
agtgagtcccgatgggaagaggcagtccatggttttaaggcgtttattgt
agaaaggcagagagagggaacgagtagggaagtagaggctggccatggcc
atgtggagagaaggggggaaggggataagggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87285942_87287088
seq2: B6Ng01-272C02.b_42_1195

seq1  GAATTCAGTGGCATGTGCCCTTTAAGTGAGACAAGGTGTGCAGAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCATGTGCCCTTTAAGTGAGACAAGGTGTGCAGAAAACAT  50

seq1  AATAAGGAACCAGACAGACTCTGGGTCATGTGGACAAGACAGGAAAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAACCAGACAGACTCTGGGTCATGTGGACAAGACAGGAAAGCCT  100

seq1  GGATCTACCACTGAACCAATGTGAAGGGGCAAGGTTCATGTCTGCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACCACTGAACCAATGTGAAGGGGCAAGGTTCATGTCTGCCCAGG  150

seq1  AGCTGCAGAGCAAACATTGCCCTCTGAGTACTCTGGTTTCAGACTTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGAGCAAACATTGCCCTCTGAGTACTCTGGTTTCAGACTTTTGG  200

seq1  TCAGCAAAACTTTAAGAGAATGACTTCTCACTAATTTAAGACATGCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAACTTTAAGAGAATGACTTCTCACTAATTTAAGACATGCAGTT  250

seq1  AGCTGTAACTCATTATGAAACACCTCAGCGTCCCTGTGTTTGTAAACGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAACTCATTATGAAACACCTCAGCGTCCCTGTGTTTGTAAACGAC  300

seq1  CTGGAAACTTGCAAGCTTTCAACAGAACATATGTAAACCCATTGACCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACTTGCAAGCTTTCAACAGAACATATGTAAACCCATTGACCTAC  350

seq1  CACGTTTCATGGTGCTGTCCAATTGACAGCAGAAAATGTGTCATGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTTCATGGTGCTGTCCAATTGACAGCAGAAAATGTGTCATGGCCTA  400

seq1  CACACTGTGTGTCAAAGTATTTTGGATGTCAAATATTTCCTTAAAGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGTGTCAAAGTATTTTGGATGTCAAATATTTCCTTAAAGGTGT  450

seq1  TTTCCGCTAAAATGCAAGACTATTCAACGAACATTCCCCTTCTTCTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGCTAAAATGCAAGACTATTCAACGAACATTCCCCTTCTTCTAAGG  500

seq1  TGGAAAGTGAAGCAATAAGAGTTTGCCTAAATATGGATACATATAATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTGAAGCAATAAGAGTTTGCCTAAATATGGATACATATAATCAA  550

seq1  AATCATTCAAATGTCACACAGTCAGGACAACGCAGTAAACTCAGTAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCAAATGTCACACAGTCAGGACAACGCAGTAAACTCAGTAGGAA  600

seq1  TGCTCATGAGTTGCCCACGAGGTGAGATACTTGGAAGCTACGTACGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGAGTTGCCCACGAGGTGAGATACTTGGAAGCTACGTACGTGAA  650

seq1  CATTGAAAGCAGCAGTGTCAGTACAACTGAATGGAAGTATTCATAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAAGCAGCAGTGTCAGTACAACTGAATGGAAGTATTCATAAAAAT  700

seq1  GTTGTTTGGCTCAGCAGATAATAACTAAATATTTGGGAACTGGAAGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGGCTCAGCAGATAATAACTAAATATTTGGGAACTGGAAGGAAG  750

seq1  GAAATGTACAAGCAGTCAAAAGCCGCAAATTCCATCCAGGAAACATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTACAAGCAGTCAAAAGCCGCAAATTCCATCCAGGAAACATGGAA  800

seq1  TCCACACAACATATCACAGGTTTGGGCTCTTTGTATAACACACAATGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAACATATCACAGGTTTGGGCTCTTTGTATAACACACAATGGAT  850

seq1  CTGTTTCAAATTACTCAATGACTTCAGAATCCATAAGTAACCACA-GGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGTTTCAAATTACTCAATGACTTCAGAATCCATAAGTAACCACAGGGAG  900

seq1  ATCAATAATAGATCAG-CCAAGAGGAGCCTCTA-TTTTATGTCTAAGCCT  947
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  ATCAATAATAGATCAGCCCAAGAGGAGCCTCTATTTTTATGTCTAAGCCT  950

seq1  GGAAA-GGAGGGTTCTATGTAAAATAA-GATTCAAGTACGAAGTAT-GGA  994
      ||||| ||||||||||||||||||||| |||||||||||||||||| |||
seq2  GGAAAGGGAGGGTTCTATGTAAAATAAGGATTCAAGTACGAAGTATGGGA  1000

seq1  ATTT-CCTTTAT-GGCCACAAGGTAATTCCATTACATGTGTTG-ATAGAA  1041
      |||| ||||||| |||||| ||||||||||| ||||||||||| ||||||
seq2  ATTTCCCTTTATGGGCCACCAGGTAATTCCA-TACATGTGTTGAATAGAA  1049

seq1  CTAT-CAACACC-TAGA-TTTTTATAAGGATTGCAAATAGGTGTCCCTTA  1088
      |||| ||||||| |||| ||||||||||   |||||||| |||| |||||
seq2  CTATCCAACACCTTAGATTTTTTATAAG--ATGCAAATA-GTGTTCCTTA  1096

seq1  AGTTCTCACCTG-ATGATGTAGTACCCTGAT-GTG-TCCAAGGGTTAAGT  1135
         |||||| || ||||||||||| |||||| ||| ||| | || |||||
seq2  --GTCTCACTTGAATGATGTAGTA-CCTGATGGTGTTCCCAAGGATAAGT  1143

seq1  TCTGATAACTTC  1147
      |||||| |||||
seq2  TCTGAT-ACTTC  1154


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