BAC Information

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BAC

Clone NameB6Ng01-272H03
Chromosome16 (Build37)
Map Location 92,163,861 - 92,278,745
singlet/doubletdoublet
Overlap genenone
Upstream geneOlig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
Downstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H03.bB6Ng01-272H03.g
ACCGA074269GA074270
length1,1321,146
definitionB6Ng01-272H03.b B6Ng01-272H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,163,861 - 92,164,992)(92,277,573 - 92,278,745)
sequence
gaattctagagtttgtaaacctctgggatgttctaggtcgtgctgggatc
ctaggaaatgcccaatgcttctgtgcagacaggtggtgactcgggtggag
ggggtggacggcacactgtgactaaataaggccctctctgctgagactca
gagagacccagaattgtctgtggccagtattgtctgagtttcctgacaat
acaatagcatgagcagttgtatatgactgtctaaccacagggtcataaaa
aggcccattgaagacataaacaagcctgttggttgcattacagaatgcct
tcccctgggaagttaaaacaaaaacagactctggcatccaggcttcagcc
tcacttctgtcacaggccaatctagaaggtagggctacggcttcctttgc
aggtctctggccttccttggtcatgtgatcttaaaccctttcaactctgc
cagacagggagggtgctcaggagtagagaagttagaagtcaacttgaaat
tccacccagactggtgggtcccggggttcctcttataccctctagggcat
gtgaaaggggagccctcgtcccctgccttatgacctctgagtaattgtgt
tttcattttgggaattggaattccctcccagccttggacttcagattcta
gaataatctttgacttcatcagacaggcccaagcaagtcctgtgacctgt
gcagggactcagctatgcccacctgaggctctgtgaaaccaagacaacct
cgtgaactccttttgtggcacagcggaagccggactgctcctgggtgaca
agtacagagtgagcaggctttgctctgcctaggaaatcatacctgccccg
tgttgcccgcaccctagagacgttgatgtattgagggttctttaaaacat
tttttttgtcataataagaaactttacttaggcttcctttaaattttttt
ttttaacatacaaatagcatatatgttaattctcaaactcctggtgtgtt
ttgcttggtgggtgttgcacaatacagttgctccttatttactggagtac
ggccagtttaactgtatgttggacattcttttctacatcggggagcatgg
tttccatttcttattgcaaattcctttactct
gaattcaagcaggtcaggaagcaggaactgatgcagaggccatggaggga
tgttgcttactggcttgctcagcctgctctcttatagaacccaagactac
cagcccagggatggtaccacccacaatgggccctccacccttgatcacta
attgagaaagtgccccacagctggatctcattaaggcacttccccagttg
aagttcctttctctgtgacaactccggcctgtgtcaagttgacacacaaa
accagccagtacacttgatataacaagtgtagctgctactacattaagct
gaaacaagaaggctccattttgaaggggccactttgaagcttattctccc
ctctgctcagattcccattctttcatcttcctcaaaatctaaaccttgat
cctatgtagagctcaaagcgcatatgctgccctgctcagaaccatagaaa
gggggttgaccagttggcttattgctagttctggtgagcagacacttttg
tgtcttcctgttcctgattgaactgcaccctgatctgctgccagtagaat
gcagaattggaggcacttctgaatctctgtgctgaggggaggaaatcaag
tctatgtagggaagcccctgttggagcagaggagacagaagtgcccggca
acacaggtgacaagaaaattcaacaggaccaatagaatgagaaaagccct
caccagaatgaaatgaaagttttgtatggaaaacttaagatcaaagacag
tagtcactattgaacaatgacttgagaggttcaagaagtgaaagaaatat
ctccagtataagaactagagagatggaaacctagagagagagtgagaaac
tggtggtaaaacagaaaggcaaagagagacagagacagagacacacacag
agactaggacacacatagagacagagaccactagagacagagaccgagac
gagactctagagacttgagacggagagacgagacccctggaaggagagac
gagacccaagacgagagataccgagacgaggcccacccgagaacgaacga
ccgagacgagagaccgagacccacagagagatgccaaccgaaacacagat
gaagaaaccctgctggggagctaacttctgaccacttggcctacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92163861_92164992
seq2: B6Ng01-272H03.b_45_1176

seq1  GAATTCTAGAGTTTGTAAACCTCTGGGATGTTCTAGGTCGTGCTGGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGTTTGTAAACCTCTGGGATGTTCTAGGTCGTGCTGGGATC  50

seq1  CTAGGAAATGCCCAATGCTTCTGTGCAGACAGGTGGTGACTCGGGTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAATGCCCAATGCTTCTGTGCAGACAGGTGGTGACTCGGGTGGAG  100

seq1  GGGGTGGACGGCACACTGTGACTAAATAAGGCCCTCTCTGCTGAGACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGACGGCACACTGTGACTAAATAAGGCCCTCTCTGCTGAGACTCA  150

seq1  GAGAGACCCAGAATTGTCTGTGGCCAGTATTGTCTGAGTTTCCTGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCAGAATTGTCTGTGGCCAGTATTGTCTGAGTTTCCTGACAAT  200

seq1  ACAATAGCATGAGCAGTTGTATATGACTGTCTAACCACAGGGTCATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCATGAGCAGTTGTATATGACTGTCTAACCACAGGGTCATAAAA  250

seq1  AGGCCCATTGAAGACATAAACAAGCCTGTTGGTTGCATTACAGAATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCATTGAAGACATAAACAAGCCTGTTGGTTGCATTACAGAATGCCT  300

seq1  TCCCCTGGGAAGTTAAAACAAAAACAGACTCTGGCATCCAGGCTTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGGGAAGTTAAAACAAAAACAGACTCTGGCATCCAGGCTTCAGCC  350

seq1  TCACTTCTGTCACAGGCCAATCTAGAAGGTAGGGCTACGGCTTCCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGTCACAGGCCAATCTAGAAGGTAGGGCTACGGCTTCCTTTGC  400

seq1  AGGTCTCTGGCCTTCCTTGGTCATGTGATCTTAAACCCTTTCAACTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTGGCCTTCCTTGGTCATGTGATCTTAAACCCTTTCAACTCTGC  450

seq1  CAGACAGGGAGGGTGCTCAGGAGTAGAGAAGTTAGAAGTCAACTTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGAGGGTGCTCAGGAGTAGAGAAGTTAGAAGTCAACTTGAAAT  500

seq1  TCCACCCAGACTGGTGGGTCCCGGGGTTCCTCTTATACCCTCTAGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCAGACTGGTGGGTCCCGGGGTTCCTCTTATACCCTCTAGGGCAT  550

seq1  GTGAAAGGGGAGCCCTCGTCCCCTGCCTTATGACCTCTGAGTAATTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGGGAGCCCTCGTCCCCTGCCTTATGACCTCTGAGTAATTGTGT  600

seq1  TTTCATTTTGGGAATTGGAATTCCCTCCCAGCCTTGGACTTCAGATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTGGGAATTGGAATTCCCTCCCAGCCTTGGACTTCAGATTCTA  650

seq1  GAATAATCTTTGACTTCATCAGACAGGCCCAAGCAAGTCCTGTGACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCTTTGACTTCATCAGACAGGCCCAAGCAAGTCCTGTGACCTGT  700

seq1  GCAGGGACTCAGCTATGCCCACCTGAGGCTCTGTGAAACCAAGACAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACTCAGCTATGCCCACCTGAGGCTCTGTGAAACCAAGACAACCT  750

seq1  CGTGAACTCCTTTTGTGGCACAGCGGAAGCCGGACTGCTCCTGGGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACTCCTTTTGTGGCACAGCGGAAGCCGGACTGCTCCTGGGTGACA  800

seq1  AGTACAGAGTGAGCAGGCTTTGCTCTGCCTAGGAAATCATACCTGCCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGAGTGAGCAGGCTTTGCTCTGCCTAGGAAATCATACCTGCCCCG  850

seq1  TGTTGCCCGCACCCTAGAGACGTTGATGTATTGAGGGTTCTTTAAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCCGCACCCTAGAGACGTTGATGTATTGAGGGTTCTTTAAAACAT  900

seq1  TTTTTTTGTCATAATAAGAAACTTTACTTAGGCTTCCTTTAAA-TTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTTTGTCATAATAAGAAACTTTACTTAGGCTTCCTTTAAATTTTTTT  950

seq1  TTTTAACATACAAATAGCATATATGTT-ATTCTCAAACTCCTGGTGTGTT  998
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTAACATACAAATAGCATATATGTTAATTCTCAAACTCCTGGTGTGTT  1000

seq1  TTGCTTGGTGGGTGTTGCACAATACAG-TGCTCC-TATTTACTGGAGGTT  1046
      ||||||||||||||||||||||||||| |||||| ||||||||||||  |
seq2  TTGCTTGGTGGGTGTTGCACAATACAGTTGCTCCTTATTTACTGGAG--T  1048

seq1  ACGGCCCAGTTAACTGTAATGTGGGACA-TCTTTTCTTACATCGGGGAAG  1095
      ||||||   |||||||| |||| ||||| ||||||| |||||||||| ||
seq2  ACGGCCAGTTTAACTGT-ATGTTGGACATTCTTTTC-TACATCGGGG-AG  1095

seq1  CGTTGTTTTCCATTCTTATTTCACATCCCTTTACTCT  1132
      | | |||| |  |||||||| || || ||||||||||
seq2  CATGGTTTCCATTTCTTATTGCAAATTCCTTTACTCT  1132

seq1: chr16_92277573_92278745
seq2: B6Ng01-272H03.g_65_1210 (reverse)

seq1  GTGTAGGCAAGGTGGTCAGAAGTTAGCTCACAACCAGTGTTTCTTCATCT  50
      |||||||| | |||||||||||||||||| | | ||| ||||||||||||
seq2  GTGTAGGCCAAGTGGTCAGAAGTTAGCTCCCCAGCAGGGTTTCTTCATCT  50

seq1  GTGTTCTGTGTTTGCATCTCTCTGTGTGTCTCTGTGTCTCTCTGTCTCTG  100
      ||||| |  ||| ||||||||||||| ||||| || ||||   ||||| |
seq2  GTGTT-TCGGTTGGCATCTCTCTGTGGGTCTCGGTCTCTC---GTCTCGG  96

seq1  TGTCTGTTTCTGTCTCTGTGTGTGCCTCTGTCTCTGTGTATCTCTCTGTC  150
          |  |||  |||| | ||| ||||| |||||   ||||||||| |||
seq2  ----TCGTTCGTTCTC-GGGTGGGCCTC-GTCTC--GGTATCTCTC-GTC  137

seq1  TTTGTGTGTCTCTGTCTCTCTTTCTATGTGTGTCTCTGTCTCTCTGTCTC  200
      |   || ||||| ||||||| ||| | | || ||   ||||||| |||||
seq2  T---TGGGTCTC-GTCTCTCCTTCCAGGGGTCTC---GTCTCTCCGTCTC  180

seq1  TATGTCTCTATGTATGTCTCTGTCTCTGTGTCTCTGTCTCTATGTGTGTC  250
       | |||||||     ||||| |||||   ||||||||||||| ||| |||
seq2  -AAGTCTCTA---GAGTCTC-GTCTC--GGTCTCTGTCTCTA-GTG-GTC  221

seq1  TCTGTCTCTATGTGTGT-CTTGTCTCTGTGTGTGTCTCTGTCTCTGTCTC  299
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  TCTGTCTCTATGTGTGTCCTAGTCTCTGTGTGTGTCTCTGTCTCTGTCTC  271

seq1  TCTTTGCC-TTCTGTTTTACCACCAGTTTCTCACTCTCTCTCTAGGTTTC  348
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCTTTCTGTTTTACCACCAGTTTCTCACTCTCTCTCTAGGTTTC  321

seq1  CATCTCTCTAGTTCTTATACTGGAGATATTTCTTTCACTTCTTGAACCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTAGTTCTTATACTGGAGATATTTCTTTCACTTCTTGAACCTC  371

seq1  TCAAGTCATTGTTCAATAGTGACTACTGTCTTTGATCTTAAGTTTTCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCATTGTTCAATAGTGACTACTGTCTTTGATCTTAAGTTTTCCAT  421

seq1  ACAAAACTTTCATTTCATTCTGGTGAGGGCTTTTCTCATTCTATTGGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTTTCATTTCATTCTGGTGAGGGCTTTTCTCATTCTATTGGTCC  471

seq1  TGTTGAATTTTCTTGTCACCTGTGTTGCCGGGCACTTCTGTCTCCTCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATTTTCTTGTCACCTGTGTTGCCGGGCACTTCTGTCTCCTCTGC  521

seq1  TCCAACAGGGGCTTCCCTACATAGACTTGATTTCCTCCCCTCAGCACAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGGGGCTTCCCTACATAGACTTGATTTCCTCCCCTCAGCACAGA  571

seq1  GATTCAGAAGTGCCTCCAATTCTGCATTCTACTGGCAGCAGATCAGGGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAGTGCCTCCAATTCTGCATTCTACTGGCAGCAGATCAGGGTG  621

seq1  CAGTTCAATCAGGAACAGGAAGACACAAAAGTGTCTGCTCACCAGAACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAATCAGGAACAGGAAGACACAAAAGTGTCTGCTCACCAGAACTA  671

seq1  GCAATAAGCCAACTGGTCAACCCCCTTTCTATGGTTCTGAGCAGGGCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGCCAACTGGTCAACCCCCTTTCTATGGTTCTGAGCAGGGCAGC  721

seq1  ATATGCGCTTTGAGCTCTACATAGGATCAAGGTTTAGATTTTGAGGAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGCTTTGAGCTCTACATAGGATCAAGGTTTAGATTTTGAGGAAGA  771

seq1  TGAAAGAATGGGAATCTGAGCAGAGGGGAGAATAAGCTTCAAAGTGGCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAATGGGAATCTGAGCAGAGGGGAGAATAAGCTTCAAAGTGGCCC  821

seq1  CTTCAAAATGGAGCCTTCTTGTTTCAGCTTAATGTAGTAGCAGCTACACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATGGAGCCTTCTTGTTTCAGCTTAATGTAGTAGCAGCTACACT  871

seq1  TGTTATATCAAGTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATCAAGTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCC  921

seq1  GGAGTTGTCACAGAGAAAGGAACTTCAACTGGGGAAGTGCCTTAATGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGTCACAGAGAAAGGAACTTCAACTGGGGAAGTGCCTTAATGAGA  971

seq1  TCCAGCTGTGGGGCACTTTCTCAATTAGTGATCAAGGGTGGAGGGCCCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTGGGGCACTTTCTCAATTAGTGATCAAGGGTGGAGGGCCCAT  1021

seq1  TGTGGGTGGTACCATCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGTACCATCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGC  1071

seq1  AGGCTGAGCAAGCCAGTAAGCAACATCCCTCCATGGCCTCTGCATCAGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGCAAGCCAGTAAGCAACATCCCTCCATGGCCTCTGCATCAGTT  1121

seq1  CCTGCTTCCTGACCTGCTTGAATTC  1173
      |||||||||||||||||||||||||
seq2  CCTGCTTCCTGACCTGCTTGAATTC  1146