BAC Information

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BAC

Clone NameB6Ng01-275G23
Chromosome16 (Build37)
Map Location 65,496,283 - 65,595,311
singlet/doubletdoublet
Overlap genePou1f1, Chmp2b
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream geneEG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275G23.bB6Ng01-275G23.g
ACCGA076474GA076475
length1,0181,149
definitionB6Ng01-275G23.b B6Ng01-275G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,594,295 - 65,595,311)(65,496,283 - 65,497,458)
sequence
gaattcctggtttcaacagtagaacactgcctgaacttgtagtggaagcc
atgcccattgttctgctttctgcaacgtggatgttaattaaagttgctga
acaaggcagcaatgagtgtgcatactatcttgttgatgtgtatgtggact
gtaggtacatatgtatacaagcacacagacatcatcatgcaacaagtagg
aacttgtaccactctctttcatccattttttctcttttataatctgtatt
ttttcactaatagagttttcttatttaagccagaaataataaaaaaaaaa
attcctgtcatctcttcatagttactccacatctatgatagccaaccgaa
taatacagatactaactacctgatgtctctacaatccgagatacctcatc
tctcctcacaatcactggcaaatatgaaggtgattgtgacgatgttgtag
catgcggccctgaaatccggctcatccttttgctgtctactgccttcaac
agggaacatcctaaatcaaaatattatatacttcatttatcttcctaaaa
ttagacagtaactctttgtggtcttcaatatcaaatttcaaagccatcta
aacatccaaaggagtttatgagtccctctgtattcagcttatcaactatt
gccacagttctagaacaaaatgcaagagcaatctgggaccatattccaaa
agtggatagaaaggaaaagggaggagatgagttggctctggtgtctgtaa
agacatcctagtttcccacagaaacacactactactactactactactac
tactactactactactactactacttctactctgaaaatagaagggtgtc
tctcttctcttgatctaagctgagaatcaggatcttcaacaaaattaggt
tctgaatctcattccagcactatgcttttaaaatggacttaatagcagct
ttaaaaaaaagctaattctggctcttaggctcttggtcttttctcttgcc
cccttgctccccttttct

gaattctttaaagccatagaaaagatcagaatgcactgcatgagtgaagg
ccgcactagtgaaatattagttaatcgtctggggtctctttttatgggtt
caatagagaggtaggcctggtggtttgaatgaccagtttctcaagtaggt
gcgtgtagttgaacatttggtccctagctggtggcactgagaggaggagc
aaccttgctagaggaagacggtcccagggagcaggcgttgagagattata
gcttcccccaacttttagttccctctctgctttgtgttggaggttgtggg
tgtgctctctaagcttcctgcccggatgtaagttgctgtgccccctgtgg
cattgtggacttcccttctggatgcctaatcaaagtaaacctttatacac
tacccatggttattatttcttattacagaatcaggaaagtaactaacgtg
gaattttggatagttctctattataattgatagactcgtgtaattttttt
tttcttctgagcatgcctctacccacgatgcacctcatatcaattgtacg
tagtttcatagacatcagagggtacatgagggactctctctacaagttca
cttggaggattcagtgtccctgactgggcatgcacccaaaatctgtccag
gtaggatgatgggtcttctattctttcctacaggatacactgagtatatt
taaatagaaactgcccgagtataattgttgttggggaaggggcaacttat
cctattgttcagagtgcttggagtgaggcagccctgcattgatcgggaga
aggagtgtgttcagtacttgcaggtgaggaagctagatggccacctttat
tcttagaagagggagcattcataacccaaaccaggtggcgtccagctcac
taaaccatttcttatgtatgcctattctgagtatattgtttactatcaaa
acatatatctgggtatcttctaataatagtacttttacggtgtacagaca
cagtaaacttttcacagctctgggtttcactcatgtctagaaaaagaatg
tccatacatcgtgcctttttttatgtgaattcaattttttccgaggaagg
atgctgaatggaacttcattaatgtaactgggagtcatgtaccctaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65594295_65595311
seq2: B6Ng01-275G23.b_49_1066 (reverse)

seq1  AGAAAAGGGGAGCAAGGGGGCAAGAG-AAAGA-CAAGAGCCTAAGAGCCA  48
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  AGAAAAGGGGAGCAAGGGGGCAAGAGAAAAGACCAAGAGCCTAAGAGCCA  50

seq1  GAATTAGCTTTTTTTTAAAGCTGCTATTAAGTCCATTTTTAAAAGCATAG  98
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATTAGCTTTTTTTTAAAGCTGCTATTAAGTCCA-TTTTAAAAGCATAG  99

seq1  TGCTGGAATGAGATTCAGAACCTAATTTTGTTGAAGATCCTGATTCTCAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAATGAGATTCAGAACCTAATTTTGTTGAAGATCCTGATTCTCAG  149

seq1  CTTAGATCAAGAGAAGAGAGACACCCTTCTATTTTCAGAGTAGAAGTAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATCAAGAGAAGAGAGACACCCTTCTATTTTCAGAGTAGAAGTAGT  199

seq1  AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTGTTTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTGTGTTTCT  249

seq1  GTGGGAAACTAGGATGTCTTTACAGACACCAGAGCCAACTCATCTCCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAACTAGGATGTCTTTACAGACACCAGAGCCAACTCATCTCCTCC  299

seq1  CTTTTCCTTTCTATCCACTTTTGGAATATGGTCCCAGATTGCTCTTGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTCTATCCACTTTTGGAATATGGTCCCAGATTGCTCTTGCAT  349

seq1  TTTGTTCTAGAACTGTGGCAATAGTTGATAAGCTGAATACAGAGGGACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAGAACTGTGGCAATAGTTGATAAGCTGAATACAGAGGGACTC  399

seq1  ATAAACTCCTTTGGATGTTTAGATGGCTTTGAAATTTGATATTGAAGACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCCTTTGGATGTTTAGATGGCTTTGAAATTTGATATTGAAGACC  449

seq1  ACAAAGAGTTACTGTCTAATTTTAGGAAGATAAATGAAGTATATAATATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGTTACTGTCTAATTTTAGGAAGATAAATGAAGTATATAATATT  499

seq1  TTGATTTAGGATGTTCCCTGTTGAAGGCAGTAGACAGCAAAAGGATGAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAGGATGTTCCCTGTTGAAGGCAGTAGACAGCAAAAGGATGAGC  549

seq1  CGGATTTCAGGGCCGCATGCTACAACATCGTCACAATCACCTTCATATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCAGGGCCGCATGCTACAACATCGTCACAATCACCTTCATATTT  599

seq1  GCCAGTGATTGTGAGGAGAGATGAGGTATCTCGGATTGTAGAGACATCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGATTGTGAGGAGAGATGAGGTATCTCGGATTGTAGAGACATCAG  649

seq1  GTAGTTAGTATCTGTATTATTCGGTTGGCTATCATAGATGTGGAGTAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGTATCTGTATTATTCGGTTGGCTATCATAGATGTGGAGTAACT  699

seq1  ATGAAGAGATGACAGGAATTTTTTTTTTTATTATTTCTGGCTTAAATAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGATGACAGGAATTTTTTTTTTTATTATTTCTGGCTTAAATAAG  749

seq1  AAAACTCTATTAGTGAAAAAATACAGATTATAAAAGAGAAAAAATGGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTATTAGTGAAAAAATACAGATTATAAAAGAGAAAAAATGGATG  799

seq1  AAAGAGAGTGGTACAAGTTCCTACTTGTTGCATGATGATGTCTGTGTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGTGGTACAAGTTCCTACTTGTTGCATGATGATGTCTGTGTGCT  849

seq1  TGTATACATATGTACCTACAGTCCACATACACATCAACAAGATAGTATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATATGTACCTACAGTCCACATACACATCAACAAGATAGTATGC  899

seq1  ACACTCATTGCTGCCTTGTTCAGCAACTTTAATTAACATCCACGTTGCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATTGCTGCCTTGTTCAGCAACTTTAATTAACATCCACGTTGCAG  949

seq1  AAAGCAGAACAATGGGCATGGCTTCCACTACAAGTTCAGGCAGTGTTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAACAATGGGCATGGCTTCCACTACAAGTTCAGGCAGTGTTCTA  999

seq1  CTGTTGAAACCAGGAATTC  1017
      |||||||||||||||||||
seq2  CTGTTGAAACCAGGAATTC  1018


seq1: chr16_65496283_65497458
seq2: B6Ng01-275G23.g_66_1214

seq1  GAATTCTTTAAAGCCATAGAAAAGATCAGAATGCACTGCATGAGTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGCCATAGAAAAGATCAGAATGCACTGCATGAGTGAAGG  50

seq1  CCGCACTAGTGAAATATTAGTTAATCGTCTGGGGTCTCTTTTTATGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTAGTGAAATATTAGTTAATCGTCTGGGGTCTCTTTTTATGGGTT  100

seq1  CAATAGAGAGGTAGGCCTGGTGGTTTGAATGACCAGTTTCTCAAGTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGAGGTAGGCCTGGTGGTTTGAATGACCAGTTTCTCAAGTAGGT  150

seq1  GCGTGTAGTTGAACATTTGGTCCCTAGCTGGTGGCACTGAGAGGAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAGTTGAACATTTGGTCCCTAGCTGGTGGCACTGAGAGGAGGAGC  200

seq1  AACCTTGCTAGAGGAAGACGGTCCCAGGGAGCAGGCGTTGAGAGATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGCTAGAGGAAGACGGTCCCAGGGAGCAGGCGTTGAGAGATTATA  250

seq1  GCTTCCCCCAACTTTTAGTTCCCTCTCTGCTTTGTGTTGGAGGTTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCCAACTTTTAGTTCCCTCTCTGCTTTGTGTTGGAGGTTGTGGG  300

seq1  TGTGCTCTCTAAGCTTCCTGCCCGGATGTAAGTTGCTGTGCCCCCTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTCTAAGCTTCCTGCCCGGATGTAAGTTGCTGTGCCCCCTGTGG  350

seq1  CATTGTGGACTTCCCTTCTGGATGCCTAATCAAAGTAAACCTTTATACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGACTTCCCTTCTGGATGCCTAATCAAAGTAAACCTTTATACAC  400

seq1  TACCCATGGTTATTATTTCTTATTACAGAATCAGGAAAGTAACTAACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATGGTTATTATTTCTTATTACAGAATCAGGAAAGTAACTAACGTG  450

seq1  GAATTTTGGATAGTTCTCTATTATAATTGATAGACTCGTGTAATTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGGATAGTTCTCTATTATAATTGATAGACTCGTGTAATTTTTTT  500

seq1  TTTCTTCTGAGCATGCCTCTACCCACGATGCACCTCATATCAATTGTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGAGCATGCCTCTACCCACGATGCACCTCATATCAATTGTACG  550

seq1  TAGTTTCATAGACATCAGAGGGTACATGAGGGACTCTCTCTACAAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCATAGACATCAGAGGGTACATGAGGGACTCTCTCTACAAGTTCA  600

seq1  CTTGGAGGATTCAGTGTCCCTGACTGGGCATGCACCCAAAATCTGTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGATTCAGTGTCCCTGACTGGGCATGCACCCAAAATCTGTCCAG  650

seq1  GTAGGATGATGGGTCTTCTATTCTTTCCTACAGGATACACTGAGTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGATGGGTCTTCTATTCTTTCCTACAGGATACACTGAGTATATT  700

seq1  TAAATAGAAACTGCCCGAGTATAATTGTTGTTGGGGAAGGGGCAACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAAACTGCCCGAGTATAATTGTTGTTGGGGAAGGGGCAACTTAT  750

seq1  CCTATTGTTCAGAGTGCTTGGAGTGAGGCAGCCCTGCATTGATC-GGAGA  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTATTGTTCAGAGTGCTTGGAGTGAGGCAGCCCTGCATTGATCGGGAGA  800

seq1  AGGAGTGTGTTCAGTACTTGCAGGTGAGGAAGCTAGATGGCCACCTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTGTTCAGTACTTGCAGGTGAGGAAGCTAGATGGCCACCTTTAT  850

seq1  TCTTAGAAGAGGGAGCATTCATAACCCAAACCAGGTGGCGTCCCAGCTCA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTTAGAAGAGGGAGCATTCATAACCCAAACCAGGTGGCGT-CCAGCTCA  899

seq1  CTAAACCATTTCTTATGTATGCCTAATTCTGAGTATAATTGTTTACTAAT  949
      |||||||||||||||||||||||| ||||||||||| |||||||||| ||
seq2  CTAAACCATTTCTTATGTATGCCT-ATTCTGAGTAT-ATTGTTTACT-AT  946

seq1  CAAAACATATATCTGGGTATCTTCTAAATAAATAGTACTTTAAGGGTTGT  999
      |||||||||||||||||||||||||||   ||||||||||| | |||   
seq2  CAAAACATATATCTGGGTATCTTCTAA--TAATAGTACTTTTACGGT--G  992

seq1  TACAGACACAAGTAAAACTTTTCACAGCTCCTGGGTTTCACTCATTGGTC  1049
      ||||||||| ||| ||||||||||||||| |||||||||||||||  || 
seq2  TACAGACAC-AGT-AAACTTTTCACAGCT-CTGGGTTTCACTCAT--GT-  1036

seq1  CTAGAAAAAGAATGTCCATACATTCTGTTGCTTTTTTTTTATGTGATTTC  1099
      |||||||||||||||||||||||  ||      ||||||||||||| |||
seq2  CTAGAAAAAGAATGTCCATACATCGTG----CCTTTTTTTATGTGAATTC  1082

seq1  ATTTTTTTTTCCGAAGAAAGAATTGCCTGAATTTTGTGACATCTCATATA  1149
      |   |||||||||| ||| ||  || |||||     ||  |  |||| ||
seq2  A--ATTTTTTCCGAGGAAGGA--TG-CTGAA-----TGGAACTTCAT-TA  1121

seq1  ATTAGTAACT-GGAGTCATGAA--CTAAGG  1176
      ||  |||||| ||||||||| |  ||||||
seq2  AT--GTAACTGGGAGTCATGTACCCTAAGG  1149


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