BAC Information

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BAC

Clone NameB6Ng01-275L17
Chromosome16 (Build37)
Map Location 6,732,735 - 6,822,707
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneLOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L17.bB6Ng01-275L17.g
ACCGA076689GA076690
length1,2051,200
definitionB6Ng01-275L17.b B6Ng01-275L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,732,735 - 6,733,937)(6,821,511 - 6,822,707)
sequence
gaattcccatgcaggcgtcttttctggacacagactctttacagttgtat
cgggtatcatgaccagtttaaatatccttgagagactgatttataaccaa
actgggagggagggttaaaaagggaaggctagctgaattatcttcaagtc
actctcagggaagatctctgagtgggctgcaagaagggctggccttggaa
ggttccacgtggtactcaccatctgtgttgtgccaaatacaaggtctggt
gactgtcatgattcacgttagagactcaacattattgtcagctttgtaag
atgtttcatgatggaatgaagcaaactggattccctgaagatactctaat
attgcttctactaaaaaaattggaggtgcaatcttttatcttgtctcact
gctctaaatgagacaataccctaacaacacaacccaattaaaactaaggg
aggaagggttcactgcagctcatgagtaggaggagagtctatcgtgcttg
taggagcttgaagcaactgctcacattgttatcgccttcaggaagcagag
agcaatggatggtcacactcagctcatgttccgctttcctaccaagtcca
tggagtgctgctgtccataccttctcacagagattcacttaatctagata
atctctcccaggaatatccagaggtttgtctcccagacgattctagatct
ggccgagttgtaaatcaaaattacccatcatacctcttgatgctggaagt
tattcatatctagtgatttgtctgatgaactgagcaggcacatctacttg
agcaggtgtgcatgtaaattacagtggaggccagtgttgctatctccaaa
gagaccacggccaagtgtgctcactgtgcttagaaggttgcacagccatc
tcaaggggctgattccgtataaaagaagagtcattttgtcctcaggtgag
atgtctctgaaggacattttaatctgctgagtcagcattcagtaaggtct
aggttataggaaaatcacatccctgctgagctatgggctttggagccacc
ctacatttgaccacactttatagtaacagtaggttagcttaagaacacag
taagagcatcaagtgcagttctgcttattggagaaattatatagcattga
ctttataagtgacatagagtcctcgatctcaggcttaagcgggtgaaacc
actcg
gaattccaggacactcagggttatacagagaaaccctgtctcaaaaagac
caaaccaaaccaaaccaaaaaaaaacaacaaccaaaaaaatagtagccca
taactttaatcttagcactcagtaggcagaggcagttctagggttctagg
ccagcatggtctacagagcttcgcttgctaactcataacagatgtttcct
gtggctatgtccattcagtggactggtcttgatgtagataaatcttaaaa
tagaacatatagacctctaagacctcagctaacattctaagggaaaaaaa
actctgcattttaaataaacaaaaaacctactctttataagacaggattc
agaaggcaactgtcaaagaaattaacccaagcacccgaaactgcacaaaa
actcctcggtacacttctgcagttccttaactagctaattaagcaggcca
gatatttctagctgtcacagcttgagggtagttgggttctgcaaagatgt
ggcttgagttctaggactaacctcacatgccaaatataagcccccaaccc
ttctccaaccttcatttagcagcaaccctgactgtctccaatcctcctgg
cctactcaggtactctggggattctgagtcatgtcccataactggaaaac
aagttgtgaaatcagcaagcagatttggcctcaaatgaagcactacaacg
aggcaggttcttgtaacagtgcatcactcactttacttctctgtgagttc
aggataaagagaatcttctgattaatgtgtaaaatgtttactctggccca
tggccccaatgaccacaggttttagtgttctcacaccaagtgtttcaaga
actcaggaatagtgtaggaatgtccttgctccttcctcccacaagtgaac
tgacctattttaattgtttaaggatacttgttagtatttgcttattattc
attccactattgaccacctcagcctaacaatgagaagaaaacacaggagg
tcaggaagaacaaaacaattttgtgacctctatgcaccatctgcttctct
cctcatgctgctgtgaagctgcctgcccagacctgcctcctgggtggaat
ctgaagaatcacaggcagagatgagatgtaattccgagtcactgaagacc
aaacttcagtaacataagtttctgtaacatactgaaaacacaaaattttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6732735_6733937
seq2: B6Ng01-275L17.b_45_1248

seq1  GAATTCCCATGCAGGCGTCTTTTCTGGACACAGACTCTTTACAGTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGCAGGCGTCTTTTCTGGACACAGACTCTTTACAGTTGTAT  50

seq1  CGGGTATCATGACCAGTTTAAATATCCTTGAGAGACTGATTTATAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTATCATGACCAGTTTAAATATCCTTGAGAGACTGATTTATAACCAA  100

seq1  ACTGGGAGGGAGGGTTAAAAAGGGAAGGCTAGCTGAATTATCTTCAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGGGAGGGTTAAAAAGGGAAGGCTAGCTGAATTATCTTCAAGTC  150

seq1  ACTCTCAGGGAAGATCTCTGAGTGGGCTGCAAGAAGGGCTGGCCTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGGGAAGATCTCTGAGTGGGCTGCAAGAAGGGCTGGCCTTGGAA  200

seq1  GGTTCCACGTGGTACTCACCATCTGTGTTGTGCCAAATACAAGGTCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACGTGGTACTCACCATCTGTGTTGTGCCAAATACAAGGTCTGGT  250

seq1  GACTGTCATGATTCACGTTAGAGACTCAACATTATTGTCAGCTTTGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCATGATTCACGTTAGAGACTCAACATTATTGTCAGCTTTGTAAG  300

seq1  ATGTTTCATGATGGAATGAAGCAAACTGGATTCCCTGAAGATACTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATGATGGAATGAAGCAAACTGGATTCCCTGAAGATACTCTAAT  350

seq1  ATTGCTTCTACTAAAAAAATTGGAGGTGCAATCTTTTATCTTGTCTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTACTAAAAAAATTGGAGGTGCAATCTTTTATCTTGTCTCACT  400

seq1  GCTCTAAATGAGACAATACCCTAACAACACAACCCAATTAAAACTAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAATGAGACAATACCCTAACAACACAACCCAATTAAAACTAAGGG  450

seq1  AGGAAGGGTTCACTGCAGCTCATGAGTAGGAGGAGAGTCTATCGTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGTTCACTGCAGCTCATGAGTAGGAGGAGAGTCTATCGTGCTTG  500

seq1  TAGGAGCTTGAAGCAACTGCTCACATTGTTATCGCCTTCAGGAAGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTTGAAGCAACTGCTCACATTGTTATCGCCTTCAGGAAGCAGAG  550

seq1  AGCAATGGATGGTCACACTCAGCTCATGTTCCGCTTTCCTACCAAGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGATGGTCACACTCAGCTCATGTTCCGCTTTCCTACCAAGTCCA  600

seq1  TGGAGTGCTGCTGTCCATACCTTCTCACAGAGATTCACTTAATCTAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCTGCTGTCCATACCTTCTCACAGAGATTCACTTAATCTAGATA  650

seq1  ATCTCTCCCAGGAATATCCAGAGGTTTGTCTCCCAGACGATTCTAGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCAGGAATATCCAGAGGTTTGTCTCCCAGACGATTCTAGATCT  700

seq1  GGCCGAGTTGTAAATCAAAATTACCCATCATACCTCTTGATGCTGGAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGTTGTAAATCAAAATTACCCATCATACCTCTTGATGCTGGAAGT  750

seq1  TATTCATATCTAGTGATTTGTCTGATGAACTGAGCAGGCACATCTACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATCTAGTGATTTGTCTGATGAACTGAGCAGGCACATCTACTTG  800

seq1  AGCAGGTGTGCATGTAAATTACAGTGGAGGCCAGTGTTGCTATCTCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGTGCATGTAAATTACAGTGGAGGCCAGTGTTGCTATCTCCAAA  850

seq1  GAGACCACGGCCAAGTGTGCTCACTGTGCTTAGAAGGTTGCACAGCCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCACGGCCAAGTGTGCTCACTGTGCTTAGAAGGTTGCACAGCCATC  900

seq1  TCAAGGGGCTGATTCCGTATAAAAGAAGAGTCATTTTGTCCTCAGGTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGCTGATTCCGTATAAAAGAAGAGTCATTTTGTCCTCAGGTGAG  950

seq1  ATGTCTCTGAAGGACATTTTAATCTGCTGAGTCAGCATTCAGGTAAGGTC  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGTCTCTGAAGGACATTTTAATCTGCTGAGTCAGCATTCA-GTAAGGTC  999

seq1  TAGGTTATAGGAAAATCACATCCTTGCTGAGCTAT-GGCCTTGGAG-CAC  1048
      ||||||||||||||||||||||| ||||||||||| ||| |||||| |||
seq2  TAGGTTATAGGAAAATCACATCCCTGCTGAGCTATGGGCTTTGGAGCCAC  1049

seq1  CCTACA-TTGACCACAACTTTATAAGTAACAGTAGG-TAGCTT-AGACCA  1095
      |||||| |||||||| ||||||| |||||||||||| |||||| ||| ||
seq2  CCTACATTTGACCAC-ACTTTAT-AGTAACAGTAGGTTAGCTTAAGAACA  1097

seq1  CAGTAGGAGCATCAAGTGGCAGTTTCTGGCTTATTTTGAAGAA--TATAT  1143
      ||||| ||||||||||| |||| |||| |||||  ||| ||||  |||||
seq2  CAGTAAGAGCATCAAGT-GCAG-TTCT-GCTTA--TTGGAGAAATTATAT  1142

seq1  AGCAAATGACTTTATAAAGTGAC-TAGAGTTTCTCGATCTCAGG-TTAA-  1190
      ||| | ||||||||| ||||||| ||||| | |||||||||||| |||| 
seq2  AGC-ATTGACTTTAT-AAGTGACATAGAG-TCCTCGATCTCAGGCTTAAG  1189

seq1  -GGGTG-AACCACTC  1203
       ||||| ||||||||
seq2  CGGGTGAAACCACTC  1204

seq1: chr16_6821511_6822707
seq2: B6Ng01-275L17.g_67_1266 (reverse)

seq1  CAAAATTT--GGTTTTCAGGTAGT--CAGAAATTTATGTTACTGAAATTT  46
      ||||||||   ||||||||   ||  |||||| ||||||||||||| |||
seq2  CAAAATTTTGTGTTTTCAGTATGTTACAGAAACTTATGTTACTGAAGTTT  50

seq1  TGTGTCCTTCAGTTGCTCTGAAATTACCATCCTCATCTCTG-CTGTGAAT  95
       ||   |||||||  ||| | ||||| ||| |||||||||| ||||| ||
seq2  GGT---CTTCAGTGACTC-GGAATTA-CAT-CTCATCTCTGCCTGTG-AT  93

seq1  TCTTCAGATTCCACCCA-GAGGCAGGTCCTGGGCAGGCAGCTTCACAGCA  144
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  TCTTCAGATTCCACCCAGGAGGCAGGT-CTGGGCAGGCAGCTTCACAGCA  142

seq1  GCATGGAGGAAGAGAAGCAGATGGGTGCATAGAGGTCACAAAA-TGTTT-  192
      |||| |||| |||||||||||| |||||||||||||||||||| ||||| 
seq2  GCAT-GAGG-AGAGAAGCAGAT-GGTGCATAGAGGTCACAAAATTGTTTT  189

seq1  -GTCTTCCTGACCT-CTGTGTTTTC-TCTCATTG-TAGGCTGA-GTGGTC  237
        |||||||||||| |||||||||| |||||||| |||||||| ||||||
seq2  GTTCTTCCTGACCTCCTGTGTTTTCTTCTCATTGTTAGGCTGAGGTGGTC  239

seq1  AATAGT-GAATGAATAATAAGCAAATACTAACAAGTATCCTTAAACAATT  286
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGAATGAATAATAAGCAAATACTAACAAGTATCCTTAAACAATT  289

seq1  AAAATAGGTCAGTTCACTTGTGGGAGGAAGGAGCAAGGACATTCCTACAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGTCAGTTCACTTGTGGGAGGAAGGAGCAAGGACATTCCTACAC  339

seq1  TATTCCTGAGTTCTTGAAACACTTGGTGTGAGAACACTAAAACCTGTGGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGAGTTCTTGAAACACTTGGTGTGAGAACACTAAAACCTGTGGT  389

seq1  CATTGGGGCCATGGGCCAGAGTAAACATTTTACACATTAATCAGAAGATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGCCATGGGCCAGAGTAAACATTTTACACATTAATCAGAAGATT  439

seq1  CTCTTTATCCTGAACTCACAGAGAAGTAAAGTGAGTGATGCACTGTTACA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATCCTGAACTCACAGAGAAGTAAAGTGAGTGATGCACTGTTACA  489

seq1  AGAACCTGCCTCGTTGTAGTGCTTCATTTGAGGCCAAATCTGCTTGCTGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGCCTCGTTGTAGTGCTTCATTTGAGGCCAAATCTGCTTGCTGA  539

seq1  TTTCACAACTTGTTTTCCAGTTATGGGACATGACTCAGAATCCCCAGAGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAACTTGTTTTCCAGTTATGGGACATGACTCAGAATCCCCAGAGT  589

seq1  ACCTGAGTAGGCCAGGAGGATTGGAGACAGTCAGGGTTGCTGCTAAATGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGTAGGCCAGGAGGATTGGAGACAGTCAGGGTTGCTGCTAAATGA  639

seq1  AGGTTGGAGAAGGGTTGGGGGCTTATATTTGGCATGTGAGGTTAGTCCTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAGAAGGGTTGGGGGCTTATATTTGGCATGTGAGGTTAGTCCTA  689

seq1  GAACTCAAGCCACATCTTTGCAGAACCCAACTACCCTCAAGCTGTGACAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGCCACATCTTTGCAGAACCCAACTACCCTCAAGCTGTGACAG  739

seq1  CTAGAAATATCTGGCCTGCTTAATTAGCTAGTTAAGGAACTGCAGAAGTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATATCTGGCCTGCTTAATTAGCTAGTTAAGGAACTGCAGAAGTG  789

seq1  TACCGAGGAGTTTTTGTGCAGTTTCGGGTGCTTGGGTTAATTTCTTTGAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAGGAGTTTTTGTGCAGTTTCGGGTGCTTGGGTTAATTTCTTTGAC  839

seq1  AGTTGCCTTCTGAATCCTGTCTTATAAAGAGTAGGTTTTTTGTTTATTTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTTCTGAATCCTGTCTTATAAAGAGTAGGTTTTTTGTTTATTTA  889

seq1  AAATGCAGAGTTTTTTTTCCCTTAGAATGTTAGCTGAGGTCTTAGAGGTC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAGTTTTTTTTCCCTTAGAATGTTAGCTGAGGTCTTAGAGGTC  939

seq1  TATATGTTCTATTTTAAGATTTATCTACATCAAGACCAGTCCACTGAATG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTCTATTTTAAGATTTATCTACATCAAGACCAGTCCACTGAATG  989

seq1  GACATAGCCACAGGAAACATCTGTTATGAGTTAGCAAGCGAAGCTCTGTA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGCCACAGGAAACATCTGTTATGAGTTAGCAAGCGAAGCTCTGTA  1039

seq1  GACCATGCTGGCCTAGAACCCTAGAACTGCCTCTGCCTACTGAGTGCTAA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGCTGGCCTAGAACCCTAGAACTGCCTCTGCCTACTGAGTGCTAA  1089

seq1  GATTAAAGTTATGGGCTACTATTTTTTTGGTTGTTGTTTTTTTTTGGTTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGTTATGGGCTACTATTTTTTTGGTTGTTGTTTTTTTTTGGTTT  1139

seq1  GGTTTGGTTTGGTCTTTTTGAGACAGGGTTTCTCTGTATAACCCTGAGTG  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTGGTCTTTTTGAGACAGGGTTTCTCTGTATAACCCTGAGTG  1189

seq1  TCCTGGAATTC  1197
      |||||||||||
seq2  TCCTGGAATTC  1200