BAC Information

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BAC

Clone NameB6Ng01-278A02
Chromosome16 (Build37)
Map Location 20,485,108 - 20,592,161
singlet/doubletdoublet
Overlap geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055
Upstream geneOlfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5
Downstream geneEG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278A02.bB6Ng01-278A02.g
ACCGA078369GA078370
length1,1181,064
definitionB6Ng01-278A02.b B6Ng01-278A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,485,108 - 20,486,245)(20,591,086 - 20,592,161)
sequence
gaattcctcagataaccttaaaggtaaaggtccaggaggcagcagaagcc
acccactctgtgctctagatgctagagtcttaactatgggaagcctggac
cccaggccctatattatgttgtgattagaactaagaaaacaataaactct
acttccaaccctaacagctgtaaataggatccaccgaagctcaccctggg
ggacctccacgggaagagttcctgtttaatgtctcgaagaaactccctag
gtggttcccttatgcagattcctgtagtcatacacagcaggtagcaggtt
aattccaggaacggaggtcaagtgtatttccaggccccagagactacctg
gtttgctttcactacagcttaaccaagaatattagttaaggttttcattg
ctgtaaagaaataatatgaccaaggcaattctcataaaaaacagcactta
attgggttacaggttctgaggttcaatccaatatcatcatggcaggaagc
atggcattgtccaagcagggatggcactggaggagttgagagttttatat
cttgttctgaaggcaaccggaagaagactgtcttccaggaagctaagagg
agagtctcaaagcccacccctacagtgacacactttctccaacaaggcta
tatctcctaatagtgccactccttgggccaagcatattcaaaccaccaca
ccaagcatgcatcttctgaattgtttgcactggaggagaactcacccctt
tgtgtcctcatgcatgttataccacatgtgcttgtctataatggagaaga
gggcaggctcctctaaatctagattctaggcttccctgtacagcaagcca
ttccattctcactccgctgctgcaggcattgaagattgtgctgcagttgg
acttgagccctaatcatgaaggataaaactttaggaaatcaacgctgttc
acatctggaaacccagttagactcctcagccaagtgttttccagaatcga
gaggatgggaactctctttaggagacagagactctgacactggacaactt
gtgcttctctgtcatcagtcaggtatagagaagttagcacgttcataata
cattcaagacagagaaaa
gaattccataaggagaaagcatttgagtaactctcagagaacaagcacaa
acacattagttagagccagcggatggtagagctgagcagtataaattgag
ctttagctaggagtgagaacctgggctgttagacaggacagtggatttga
ttctggagctagtccgttcataggttcaccggaactcatgtgtgtagtct
aagaggcaagggactgaggaggagatagcctgcctcaacctaaagagact
atggctacctgaacagtagaggtctttggtaccctgtaagctactttgtg
cctattgtgtctgcctggctgcgaaggacagactcagcctgggccacatt
ctttcagtaccaggttcaggttagatgcccagtccatgactgctggataa
aggggtaaccaatggatggaaaataaaatcagcgtctggaagaagaaagg
aggctggcgatgttagcggaggcacgagggtgcaagaacctgagctggca
ttcgagggcgcgggctcgggctcgggctcggagcttaccctgtgcgcagc
ggcggggtgtagaggtccctagtcccgggcccagagcgcgacagcaggcg
gcctgtgatcggcgccggctatgcaactggaaggagacgcgccgtccggc
cgcctcggcctcgaagccagataccacctccgcctcagccagagggtaca
cgaacacgcctgcgagcaggaacaggcagacctgctctcgaaccccacct
ggcatttgctacctccccgcgcccgcaccaggtctcaccttccaccggct
ggggctgtgggttgtggtaggtaagccgggcacgcagctgaggcagggtc
ccttggcatagcccggacgcagagtcggtgagcggcagcggcgtccagct
ggtgggggcagtacaggccaggcattggtgcccaccctgcgtgacagggg
ctggatgaggggccactcgctcagcgtcatgaactagctatgcacctgac
ctatcgggtacctggacctggggatgaagcttgcaaggagcaaggctgaa
ttcagagacccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_20485108_20486245
seq2: B6Ng01-278A02.b_46_1163

seq1  GAATTCCTCAGATAACCTTAAAGGTAAAGGTCCAGGAGGCAGCAGAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGATAACCTTAAAGGTAAAGGTCCAGGAGGCAGCAGAAGCC  50

seq1  ACCCACTCTGTGCTCTAGATGCTAGAGTCTTAACTATGGGAAGCCTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCTGTGCTCTAGATGCTAGAGTCTTAACTATGGGAAGCCTGGAC  100

seq1  CCCAGGCCCTATATTATGTTGTGATTAGAACTAAGAAAACAATAAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCCTATATTATGTTGTGATTAGAACTAAGAAAACAATAAACTCT  150

seq1  ACTTCCAACCCTAACAGCTGTAAATAGGATCCACCGAAGCTCACCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAACCCTAACAGCTGTAAATAGGATCCACCGAAGCTCACCCTGGG  200

seq1  GGACCTCCACGGGAAGAGTTCCTGTTTAATGTCTCGAAGAAACTCCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCACGGGAAGAGTTCCTGTTTAATGTCTCGAAGAAACTCCCTAG  250

seq1  GTGGTTCCCTTATGCAGATTCCTGTAGTCATACACAGCAGGTAGCAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCCTTATGCAGATTCCTGTAGTCATACACAGCAGGTAGCAGGTT  300

seq1  AATTCCAGGAACGGAGGTCAAGTGTATTTCCAGGCCCCAGAGACTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGGAACGGAGGTCAAGTGTATTTCCAGGCCCCAGAGACTACCTG  350

seq1  GTTTGCTTTCACTACAGCTTAACCAAGAATATTAGTTAAGGTTTTCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTCACTACAGCTTAACCAAGAATATTAGTTAAGGTTTTCATTG  400

seq1  CTGTAAAGAAATAATATGACCAAGGCAATTCTCATAAAAAACAGCACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGAAATAATATGACCAAGGCAATTCTCATAAAAAACAGCACTTA  450

seq1  ATTGGGTTACAGGTTCTGAGGTTCAATCCAATATCATCATGGCAGGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTTACAGGTTCTGAGGTTCAATCCAATATCATCATGGCAGGAAGC  500

seq1  ATGGCATTGTCCAAGCAGGGATGGCACTGGAGGAGTTGAGAGTTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTGTCCAAGCAGGGATGGCACTGGAGGAGTTGAGAGTTTTATAT  550

seq1  CTTGTTCTGAAGGCAACCGGAAGAAGACTGTCTTCCAGGAAGCTAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGAAGGCAACCGGAAGAAGACTGTCTTCCAGGAAGCTAAGAGG  600

seq1  AGAGTCTCAAAGCCCACCCCTACAGTGACACACTTTCTCCAACAAGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCAAAGCCCACCCCTACAGTGACACACTTTCTCCAACAAGGCTA  650

seq1  TATCTCCTAATAGTGCCACTCCTTGGGCCAAGCATATTCAAACCACCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTAATAGTGCCACTCCTTGGGCCAAGCATATTCAAACCACCACA  700

seq1  CCAAGCATGCATCTTCTGAATTGTTTGCACTGGAGGAGAACTCACCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATGCATCTTCTGAATTGTTTGCACTGGAGGAGAACTCACCCCTT  750

seq1  TGTGTCCTCATGCATGTTATACCACATGTGCTTGTCTATAATGGAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCATGCATGTTATACCACATGTGCTTGTCTATAATGGAGAAGA  800

seq1  GGGCAGGGCTCCTCTAAATCTAGATTCTAGGCTTCCCTGTACAGCAAGCC  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCA-GGCTCCTCTAAATCTAGATTCTAGGCTTCCCTGTACAGCAAGCC  849

seq1  ATTCCATTCTCACTCCGCTGCTGCAGGCATTGAAGATTGTGCTGCAGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTCTCACTCCGCTGCTGCAGGCATTGAAGATTGTGCTGCAGTTG  899

seq1  GACTTGAGCCCTAATCATGAAGGATAAAAACTTTAGGAAATCAACGCTGT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACTTGAGCCCTAATCATGAAGGAT-AAAACTTTAGGAAATCAACGCTGT  948

seq1  TCACATCTGGAAACCCAGTTAGACTCCTCAGCCAAGGTTGTTTTCCAGAA  1000
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  TCACATCTGGAAACCCAGTTAGACTCCTCAGCCAAG--TGTTTTCCAGAA  996

seq1  TCGAAGAGGATGGGAACTCCTCTTTAGGAGACAAGAAGGACTCTGACACT  1050
      ||| |||||||||||||| ||||||||||||| |||  ||||||||||||
seq2  TCG-AGAGGATGGGAACT-CTCTTTAGGAGAC-AGA--GACTCTGACACT  1041

seq1  GGGACAAACTTGTTGCTTCTCTGTCAATCAGTCAGGGTAATTAGAGAAGG  1100
       |||| |||||| |||||||||||| |||||||| ||||  |||||||| 
seq2  -GGAC-AACTTG-TGCTTCTCTGTC-ATCAGTCA-GGTA--TAGAGAAG-  1083

seq1  TTTAGCCACGGTCATAATAACATTCAGGACAGAGAAAA  1138
       |||| |||| ||||||| ||||||| |||||||||||
seq2  -TTAG-CACGTTCATAAT-ACATTCAAGACAGAGAAAA  1118

seq1: chr16_20591086_20592161
seq2: B6Ng01-278A02.g_67_1130 (reverse)

seq1  GGGGGGTCTCCCGACTCAGCCTTGCTCCCTCTGCAAGCTTTCATCCCCAG  50
      ||||||||||   | |||||||||||||   ||||||| |||||||||||
seq2  GGGGGGTCTCTGAATTCAGCCTTGCTCC--TTGCAAGC-TTCATCCCCAG  47

seq1  GTCCCCAGGTACCCGATAGGGTCAGGTGGCATAGCTAGTTTTCATGACGC  100
      ||  |||||||||||||| |||||||| ||||||||||  ||||||||||
seq2  GT--CCAGGTACCCGATA-GGTCAGGT-GCATAGCTAG--TTCATGACGC  91

seq1  TGGAGCGAGGTGCCCCTCATCCAGCCCCTGTTCACGCAGGGTGGGCACC-  149
      | |||||||  ||||||||||||||||||| |||||||||||||||||| 
seq2  T-GAGCGAGTGGCCCCTCATCCAGCCCCTG-TCACGCAGGGTGGGCACCA  139

seq1  ATGCCTGGCCTGTACTG-CCCCACCAGCTGGACGCCGCTGCCGCTCACCG  198
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGCCTGGCCTGTACTGCCCCCACCAGCTGGACGCCGCTGCCGCTCACCG  189

seq1  ACTCCTGCGTCCGGGCCTATGCCAAGGGACCCTGCCTCAGCCTGCGTGCC  248
      ||| ||||||||||| |||||||||||||||||||||||| |||||||||
seq2  ACT-CTGCGTCCGGG-CTATGCCAAGGGACCCTGCCTCAG-CTGCGTGCC  236

seq1  CGGCTTACCTACCACAACCCACAGCCCCAGCCGGTGGAAGGTGAGACCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTACCTACCACAACCCACAGCCCCAGCCGGTGGAAGGTGAGACCTG  286

seq1  GTGCGGGCGCGGGGAGGTAGCAAATGCCAGGTGGGGTTCGAGAGCAGGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGGCGCGGGGAGGTAGCAAATGCCAGGTGGGGTTCGAGAGCAGGTC  336

seq1  TGCCTGTTCCTGCTCGCAGGCGTGTTCGTGTACCCTCTGGCTGAGGCGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTCCTGCTCGCAGGCGTGTTCGTGTACCCTCTGGCTGAGGCGGA  386

seq1  GGTGGTATCTGGCTTCGAGGCCGAGGCGGCCGGACGGCGCGTCTCCTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATCTGGCTTCGAGGCCGAGGCGGCCGGACGGCGCGTCTCCTTCC  436

seq1  AGTTGCATAGCCGGCGCCGATCACAGGCCGCCTGCTGTCGCGCTCTGGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATAGCCGGCGCCGATCACAGGCCGCCTGCTGTCGCGCTCTGGGC  486

seq1  CCGGGACTAGGGACCTCTACACCCCGCCGCTGCGCACAGGGTAAGCTCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGACTAGGGACCTCTACACCCCGCCGCTGCGCACAGGGTAAGCTCCG  536

seq1  AGCCCGAGCCCGAGCCCGCGCCCTCGAATGCCAGCTCAGGTTCTTGCACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGAGCCCGAGCCCGCGCCCTCGAATGCCAGCTCAGGTTCTTGCACC  586

seq1  CTCGTGCCTCCGCTAACATCGCCAGCCTCCTTTCTTCTTCCAGACGCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCCTCCGCTAACATCGCCAGCCTCCTTTCTTCTTCCAGACGCTGA  636

seq1  TTTTATTTTCCATCCATTGGTTACCCCTTTATCCAGCAGTCATGGACTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCCATCCATTGGTTACCCCTTTATCCAGCAGTCATGGACTGG  686

seq1  GCATCTAACCTGAACCTGGTACTGAAAGAATGTGGCCCAGGCTGAGTCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAACCTGAACCTGGTACTGAAAGAATGTGGCCCAGGCTGAGTCTG  736

seq1  TCCTTCGCAGCCAGGCAGACACAATAGGCACAAAGTAGCTTACAGGGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGCAGCCAGGCAGACACAATAGGCACAAAGTAGCTTACAGGGTAC  786

seq1  CAAAGACCTCTACTGTTCAGGTAGCCATAGTCTCTTTAGGTTGAGGCAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCTCTACTGTTCAGGTAGCCATAGTCTCTTTAGGTTGAGGCAGG  836

seq1  CTATCTCCTCCTCAGTCCCTTGCCTCTTAGACTACACACATGAGTTCCGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCTCCTCAGTCCCTTGCCTCTTAGACTACACACATGAGTTCCGG  886

seq1  TGAACCTATGAACGGACTAGCTCCAGAATCAAATCCACTGTCCTGTCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTATGAACGGACTAGCTCCAGAATCAAATCCACTGTCCTGTCTAA  936

seq1  CAGCCCAGGTTCTCACTCCTAGCTAAAGCTCAATTTATACTGCTCAGCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGGTTCTCACTCCTAGCTAAAGCTCAATTTATACTGCTCAGCTC  986

seq1  TACCATCCGCTGGCTCTAACTAATGTGTTTGTGCTTGTTCTCTGAGAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCGCTGGCTCTAACTAATGTGTTTGTGCTTGTTCTCTGAGAGTT  1036

seq1  ACTCAAATGCTTTCTCCTTATGGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  ACTCAAATGCTTTCTCCTTATGGAATTC  1064