BAC Information

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BAC

Clone NameB6Ng01-279B19
Chromosome16 (Build37)
Map Location 57,315,660 - 57,452,624
singlet/doubletdoublet
Overlap gene2610528E23Rik, 4631422O05Rik
Upstream geneLOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c
Downstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279B19.bB6Ng01-279B19.g
ACCGA079176GA079177
length1,1461,143
definitionB6Ng01-279B19.b B6Ng01-279B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,315,660 - 57,316,806)(57,451,510 - 57,452,624)
sequence
gaattctatcaccccatttagctagttggcttgaaagagtctggggtaca
gcccaaatactattttacaattggaactccacaacaacaaaactaaaata
cttaattaataaagattttttaaaaattggggggatagagtacttgctct
atagcccaggctagactcaaacttgtgatactactatctctggagttctg
ggattcaggacccgctctaacagacttgccatgattaaagttcttattta
caggaagaatcaaccaagttctacaccaatactttttaaaggtgtgagat
gtccttttgtgagtttagtatcttatcttcattggagacatttacctctt
gaagcatctgataagattgtatactgaataattaatattttcagtaaaag
aaaagtacattcataaatcttggtattcaattctgcaaatacatttttaa
tgtccgatataaatcactaacagttaaaaatgtctagatggaggaacaag
gattaagagtgtgtgcgtggaaaagggatacattttcaacgtggagcacc
taactacaaaacagtcaaaacctgaacccagtttgttccttaggaaaaca
gaagcctggctgtacctggtaggtgcagttcttctaattctatcacggaa
cggctgctgctgtaatggtctctgatcagcttctgaaggtcctcaggggt
ccctggtttgggctctgattttgcaagaatatcagaaattttcttctaaa
acaagagaagggggtgggggagagaaagcagaacacagactttataatgg
cctatggtagaggttcatttttctggcatttaaatggcatatagcattta
gtgatagctgagaaagaacttgagttttaaacaatccctcatgggaagcc
tcatgacatagtgagtgcttgaaaaatgaagagatgctctagcgggcctc
ctgtaatgtctggtttgcatctttttagacgtgaaaatttttccacctca
gcacaaaatgtttttctggtaaaagtcctagaagtcttgttctatgggaa
cttctttttactctatacgatctgtacacctctttgaagattggattcgg
agaactccgtgcaccctgtttagatgcagccccaggctggaacttc
gaattcaattttatgtgcttagcaaatgagtggaaaaagacatagagtgc
gttcagacaagtctcccgagcttatgctcagtgaagctgtactgtggccc
taacctgagattagatagatagttagatagatagatagatagatagattg
attgattgattgattttcctcagtccatgtgtattcccatttgcctctca
gggtaagcatcttgccttgcccaatgtaatgtcgttttgtacagcatgtt
tcataaacacaagccaactattccattccatcttttatgcaaccaaagac
atgttatctatgccaaggctttagaggaaatccatctgggtctagcctac
taagaaacattatcttgtcttcctgcaggaggccgtcctagcacaagctg
aagggttttttccctttaagtagtctctaaaaatcctaacctccaaatga
aaatcacccccttcaggagactgctcatattcaaacaggaaattttaatt
agggtgttctaaaattttcttaatcccaagagcatatgtcagttgccgaa
tgtatcgtcggttttctctgtaatatgccaagccattaggattagtattg
aacagactaaatatcagtgttcccataacaaaactgttaagccaactgtg
gtagcatgtaccatactaagtatgggtagcctgtgcccagcctttgggag
gcaagaagatcaggagttcgagggcagctttggtgacgtgttaatttgag
gttagcttgaggtacaaaagaccctgtttccaacaataacaataaacctg
tgttaccactgaaggcaatggagagaagccaagtgaaatggagagaaacc
gggtgagaacagcagtgaacgactgacccatcagagacgagggaaaagct
gagtgaagagaatgttgtgctatgggagcctgatcaaggtcaatcccaag
gctcccccatgggaaggatagagcaatctgtcctgcagcttgtcttctga
accttccacgtgtgctggtggtgttgtggtacaacaagcacttgtggtgc
cgtggagtgcacacccacggagcgaaggaaactaaaaataaaccaaaatt
ttctatgagatgggccttactggccaaaaaaaaacccctaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_57315660_57316806
seq2: B6Ng01-279B19.b_49_1194

seq1  GAATTCTATCACCCCATTTAGCTAGTTGGCTTGAAAGAGTCTGGGGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCACCCCATTTAGCTAGTTGGCTTGAAAGAGTCTGGGGTACA  50

seq1  GCCCAAATACTATTTTACAATTGGAACTCCACAACAACAAAACTAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATACTATTTTACAATTGGAACTCCACAACAACAAAACTAAAATA  100

seq1  CTTAATTAATAAAGATTTTTTAAAAATTGGGGGGATAGAGTACTTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAATAAAGATTTTTTAAAAATTGGGGGGATAGAGTACTTGCTCT  150

seq1  ATAGCCCAGGCTAGACTCAAACTTGTGATACTACTATCTCTGGAGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCAGGCTAGACTCAAACTTGTGATACTACTATCTCTGGAGTTCTG  200

seq1  GGATTCAGGACCCGCTCTAACAGACTTGCCATGATTAAAGTTCTTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGGACCCGCTCTAACAGACTTGCCATGATTAAAGTTCTTATTTA  250

seq1  CAGGAAGAATCAACCAAGTTCTACACCAATACTTTTTAAAGGTGTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAATCAACCAAGTTCTACACCAATACTTTTTAAAGGTGTGAGAT  300

seq1  GTCCTTTTGTGAGTTTAGTATCTTATCTTCATTGGAGACATTTACCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTGTGAGTTTAGTATCTTATCTTCATTGGAGACATTTACCTCTT  350

seq1  GAAGCATCTGATAAGATTGTATACTGAATAATTAATATTTTCAGTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCTGATAAGATTGTATACTGAATAATTAATATTTTCAGTAAAAG  400

seq1  AAAAGTACATTCATAAATCTTGGTATTCAATTCTGCAAATACATTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACATTCATAAATCTTGGTATTCAATTCTGCAAATACATTTTTAA  450

seq1  TGTCCGATATAAATCACTAACAGTTAAAAATGTCTAGATGGAGGAACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGATATAAATCACTAACAGTTAAAAATGTCTAGATGGAGGAACAAG  500

seq1  GATTAAGAGTGTGTGCGTGGAAAAGGGATACATTTTCAACGTGGAGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGAGTGTGTGCGTGGAAAAGGGATACATTTTCAACGTGGAGCACC  550

seq1  TAACTACAAAACAGTCAAAACCTGAACCCAGTTTGTTCCTTAGGAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAAAACAGTCAAAACCTGAACCCAGTTTGTTCCTTAGGAAAACA  600

seq1  GAAGCCTGGCTGTACCTGGTAGGTGCAGTTCTTCTAATTCTATCACGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGGCTGTACCTGGTAGGTGCAGTTCTTCTAATTCTATCACGGAA  650

seq1  CGGCTGCTGCTGTAATGGTCTCTGATCAGCTTCTGAAGGTCCTCAGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCTGCTGTAATGGTCTCTGATCAGCTTCTGAAGGTCCTCAGGGGT  700

seq1  CCCTGGTTTGGGCTCTGATTTTGCAAGAATATCAGAAATTTTCTTCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTTGGGCTCTGATTTTGCAAGAATATCAGAAATTTTCTTCTAAA  750

seq1  ACAAGAGAAGGGGGTGGGGGAGAGAAAGCAGAACACAGACTTTATAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAAGGGGGTGGGGGAGAGAAAGCAGAACACAGACTTTATAATGG  800

seq1  CCTATGGTAGAGGTTCATTTTTCTGGCATTTAAATGGCATATAGCATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGTAGAGGTTCATTTTTCTGGCATTTAAATGGCATATAGCATTTA  850

seq1  GTGATAGCTGAGAAAGAACTTGAGTTTTAAACAATCCCTCATGGGAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGCTGAGAAAGAACTTGAGTTTTAAACAATCCCTCATGGGAAGCC  900

seq1  TCATGACATAGTGAGTGCTTGAAAAATGAAGAGATGCTCTAGCGGGCTCC  950
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TCATGACATAGTGAGTGCTTGAAAAATGAAGAGATGCTCTAGCGGGCCTC  950

seq1  CTGTAATGTCTGGTTTGCATC-TTTTAGACGTGAAAA-TTTTCCA-CTCA  997
      ||||||||||||||||||||| ||||||||||||||| ||||||| ||||
seq2  CTGTAATGTCTGGTTTGCATCTTTTTAGACGTGAAAATTTTTCCACCTCA  1000

seq1  GCACAAAATG-TTTTCTGTTAAAAGTCTTAGAAGTCTTGTTCTATGGAAA  1046
      |||||||||| ||||||| |||||||| ||||||||||||||||||| ||
seq2  GCACAAAATGTTTTTCTGGTAAAAGTCCTAGAAGTCTTGTTCTATGGGAA  1050

seq1  CTTCTTTTTAACTCCTATACGATCTGTACA-CTCTTGAAAGAATGGGATT  1095
      ||||||||| ||| |||||||||||||||| |||||  ||| || |||||
seq2  CTTCTTTTT-ACT-CTATACGATCTGTACACCTCTTTGAAG-ATTGGATT  1097

seq1  TGGAGAACTTCCGGTGCACCCTGTTTAGATGGCGAGCCCCAGGCTGG-AC  1144
       ||||||||  | ||||||||||||||||||   ||||||||||||| ||
seq2  CGGAGAACT--CCGTGCACCCTGTTTAGATG--CAGCCCCAGGCTGGAAC  1143

seq1  TTC  1147
      |||
seq2  TTC  1146

seq1: chr16_57451510_57452624
seq2: B6Ng01-279B19.g_67_1209 (reverse)

seq1  ATTTAGGG--TTTTTTTTGGCAGGTATGGCC--ACTCATAGAAA---TTT  43
      ||||||||  |||||||||||  ||| ||||   ||||||||||   || 
seq2  ATTTAGGGGTTTTTTTTTGGCCAGTAAGGCCCATCTCATAGAAAATTTTG  50

seq1  GTTTAATTT---TTTTGTTCTCTCTCTGTGTGTGCACT-CAC-GCA-CAC  87
      ||||| |||   |||  ||| |||  || ||||||||| ||| ||| |||
seq2  GTTTATTTTTAGTTTCCTTCGCTCCGTGGGTGTGCACTCCACGGCACCAC  100

seq1  AAGTGCTTG-TGTA-CAC-ACACCA-CAGCACACGTGGA--GGTCAGAAG  131
      ||||||||| |||| ||| |||||| |||||||||||||  | |||||||
seq2  AAGTGCTTGTTGTACCACAACACCACCAGCACACGTGGAAGGTTCAGAAG  150

seq1  ACAAGCTGCA-GACAG-TTGCTCTATCCTT-CCAT-GGGGAGCC-TGGGA  176
      |||||||||| ||||| ||||||||||||| |||| |||||||| |||||
seq2  ACAAGCTGCAGGACAGATTGCTCTATCCTTCCCATGGGGGAGCCTTGGGA  200

seq1  TTGA-CTTGATCAGGCT-CCATAGCACAAACATCTCTTCACTCAGCTTTT  224
      |||| |||||||||||| |||||||||||   ||||||||||||||||||
seq2  TTGACCTTGATCAGGCTCCCATAGCACAACATTCTCTTCACTCAGCTTTT  250

seq1  -CCTCGTCTCTGATGGGTCAGTCGTTCACTGCTGTTCTCA-CCGGTTTCT  272
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCTCGTCTCTGATGGGTCAGTCGTTCACTGCTGTTCTCACCCGGTTTCT  300

seq1  CTCCATTTCACTTGGCTTCTCTCCATTGCCTTCAGTGGTAACACAGGTTT  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTCACTTGGCTTCTCTCCATTGCCTTCAGTGGTAACACAGGTTT  350

seq1  ATTGTTATTGTTGGAAACAGGGTCTTTTGTACCTCAAGCTAACCTCAAAT  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATTGTTGGAAACAGGGTCTTTTGTACCTCAAGCTAACCTCAAAT  400

seq1  TAACACGTCACCAAAGCTGCCCTCGAACTCCTGATCTTCTTGCCTCCCAA  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGTCACCAAAGCTGCCCTCGAACTCCTGATCTTCTTGCCTCCCAA  450

seq1  AGGCTGGGCACAGGCTACCCATACTTAGTATGGTACATGCTACCACAGTT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGCACAGGCTACCCATACTTAGTATGGTACATGCTACCACAGTT  500

seq1  GGCTTAACAGTTTTGTTATGGGAACACTGATATTTAGTCTGTTCAATACT  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACAGTTTTGTTATGGGAACACTGATATTTAGTCTGTTCAATACT  550

seq1  AATCCTAATGGCTTGGCATATTACAGAGAAAACCGACGATACATTCGGCA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAATGGCTTGGCATATTACAGAGAAAACCGACGATACATTCGGCA  600

seq1  ACTGACATATGCTCTTGGGATTAAGAAAATTTTAGAACACCCTAATTAAA  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATATGCTCTTGGGATTAAGAAAATTTTAGAACACCCTAATTAAA  650

seq1  ATTTCCTGTTTGAATATGAGCAGTCTCCTGAAGGGGGTGATTTTCATTTG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTTTGAATATGAGCAGTCTCCTGAAGGGGGTGATTTTCATTTG  700

seq1  GAGGTTAGGATTTTTAGAGACTACTTAAAGGGAAAAAACCCTTCAGCTTG  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGGATTTTTAGAGACTACTTAAAGGGAAAAAACCCTTCAGCTTG  750

seq1  TGCTAGGACGGCCTCCTGCAGGAAGACAAGATAATGTTTCTTAGTAGGCT  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGACGGCCTCCTGCAGGAAGACAAGATAATGTTTCTTAGTAGGCT  800

seq1  AGACCCAGATGGATTTCCTCTAAAGCCTTGGCATAGATAACATGTCTTTG  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGATGGATTTCCTCTAAAGCCTTGGCATAGATAACATGTCTTTG  850

seq1  GTTGCATAAAAGATGGAATGGAATAGTTGGCTTGTGTTTATGAAACATGC  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATAAAAGATGGAATGGAATAGTTGGCTTGTGTTTATGAAACATGC  900

seq1  TGTACAAAACGACATTACATTGGGCAAGGCAAGATGCTTACCCTGAGAGG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAACGACATTACATTGGGCAAGGCAAGATGCTTACCCTGAGAGG  950

seq1  CAAATGGGAATACACATGGACTGAGGAAAATCAATCAATCAATCAATCTA  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGAATACACATGGACTGAGGAAAATCAATCAATCAATCAATCTA  1000

seq1  TCTATCTATCTATCTATCTAACTATCTATCTAATCTCAGGTTAGGGCCAC  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTAACTATCTATCTAATCTCAGGTTAGGGCCAC  1050

seq1  AGTACAGCTTCACTGAGCATAAGCTCGGGAGACTTGTCTGAACGCACTCT  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCTTCACTGAGCATAAGCTCGGGAGACTTGTCTGAACGCACTCT  1100

seq1  ATGTCTTTTTCCACTCATTTGCTAAGCACATAAAATTGAATTC  1115
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTTTCCACTCATTTGCTAAGCACATAAAATTGAATTC  1143