BAC Information

Click to search

BAC

Clone NameB6Ng01-282E16
Chromosome16 (Build37)
Map Location 61,275,974 - 61,276,325
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170, LOC100043524
Downstream geneLOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282E16.bB6Ng01-282E16.g
ACCGA081548GA081549
length1,171960
definitionB6Ng01-282E16.b B6Ng01-282E16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccatagagggaatctaacaggcaggatcctagagggaattg
tgacccctgtggtttaaatttaaaatgtgccccacaggcccttgtaccct
tgcccctcattttttggtgctctgtggggttggaatgtgcagacttgctg
atggaagtacgtcactgaggccaatctagtttataacattgttccacttc
ctgctctctccccctccctctcttcctctccctccactctctctgcttcc
tatatgtggatgatcacacagcttcctgttcccaccaccatgcctgtctg
ttgccataccttctgccatgatgaactctattgccctagagccataagct
caaacaaaccctttcttcttccttaagtcgcttctggtcatagtgtttat
cacagcaacagaaatgtaacttaagaaatgataacatgtgcagaggtgca
gagcactgccagcaatacatgagcatgtggctctagatgaatactgacac
gggaatgttggtgttatgtcttatgctgtgcttaattctgctactgtgat
gtaactccaaccaaaagccacttagggaggaaagggttttcagcttacag
ttaaagtccatcacaaaaagaggtctggggcaggaacttaaacaggaacc
ggaagcagaacccatgagagaacactgcctgctgagttgctggctcatac
gcttatgttcagcctgactggggaatggtactgcccctggtgggctggac
tctatttcatcaactaacaatcaagacaatccccctagacatgccacagg
acaatcttatctgagtaatctctcttgagaggtctttctcatatgactct
aggctgtgtcaagttgataatttgagctaattagaacatactacatcttt
agaactaaattattcagcaatgatacataggaaatctgatgtgctaataa
caaactactgtaaaattctaactcttcctgaagtttttaaaaagtgacta
aattaatgttctaattaatgttgtacattgtaatagtgactaactagaaa
atgcatatggataacttcaattggggcaagaatagaaacatataccttgg
atactagacttccaggaaaagataccgtacattgaatgtatatttaacgt
taatatttttaggttaattta

gaattcctgatctttccaagacttttttcatgaatgggtgttggatcttg
tcaaatgcattctcagcaactaatgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacgttgatggatttctgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcagttagcaagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttagttatcagagtaattgtggcttcatagaatgagttg
ggtagaattccctttacttctattttgtggaatagtttgtgcagaactgg
gattagatcttctttgaaggtctggtagaactctgcactaaacccatctg
gtcccgggctttttttggttgggagactattaatgactgcttctatttcc
ttaggggatatgcgactgtttagaacgttaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
ttaggatgtttgtccctgtgccctctagtgagtctagctaagggtttatc
tatctttgtttgattttctcaaagaaccaactcctcgttttggttaattc
tttgaatagttctttcttgtttctactttggttgatttcacccctgagtt
tgattatttcctgccgtctactcctccttgggttgaatttgcttcccttt
tctctagagcttttagatgtgttgtcaggctgctagtatgtgctctctcc
ccgtttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_61275974_61276325
seq2: B6Ng01-282E16.g_603_958 (reverse)

seq1  AGCAAATTCAACC--AAGAGGAGTAGAAGGCAGGAAATAATCAAATTCAG  48
      |||||||||||||  | |||||||||| ||||||||||||||||| ||||
seq2  AGCAAATTCAACCCAAGGAGGAGTAGACGGCAGGAAATAATCAAACTCAG  50

seq1  GGGCAAAATCAACC-AAGTGGAAACAAG-AAGAACTATTCAAAGAATCAA  96
      |||  ||||||||| |||| |||||||| |||||||||||||||||| ||
seq2  GGGTGAAATCAACCAAAGTAGAAACAAGAAAGAACTATTCAAAGAATTAA  100

seq1  CC-AAATGAGGAGCTGGTTCTTTGAGAAAATCAA--CAAGATAGATAAAC  143
      || ||| |||||| ||||||||||||||||||||   |||||||||||||
seq2  CCAAAACGAGGAGTTGGTTCTTTGAGAAAATCAAACAAAGATAGATAAAC  150

seq1  CCTTAGCCAGAGTCACGAAAGGGCAAAGG--AAATCATTC-CAATTAACA  190
      ||||||| ||| |||| | |||||| |||   || ||| |  ||||||||
seq2  CCTTAGCTAGACTCACTAGAGGGCACAGGGACAAACATCCTAAATTAACA  200

seq1  AAATCAGAAATGAAAAGGGAGACATAACAACATATTCTGAAGAAATCCAA  240
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  AAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA  250

seq1  AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAA  290
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAA  300

seq1  CCTAGATGAAATGGACAAGTTTCTAGACAGATACCAGGTACCAAAGTTAA  340
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAA  350

seq1  CTCAAGATCAGG  352
            ||||||
seq2  ------ATCAGG  356


| Home | SequenceCutter | Blast | Download |