BAC Information

Click to search

BAC

Clone NameB6Ng01-282E17
Chromosome16 (Build37)
Map Location 47,412,027 - 47,413,151
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282E17.bB6Ng01-282E17.g
ACCGA081550GA081551
length1,1741,130
definitionB6Ng01-282E17.b B6Ng01-282E17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattgaatttgctttgtcctgtctgactactgctgggaatgatg
tttattcttataagtggttggtagacctactgagactctccagtagaaaa
ctattttttttcctttgcaagtggtaaccaaatggagatagcttttggat
tagggatggaggcatgtgtccagttcccctctcagcactgagataccctc
tggcttagacctgtgcatgctgccacagttatgtttgtcagcttggttag
ttccatggagtcctccacactctctggcacttatactctttcttcccgct
gcttctgaagagttctttgaacccttaggagagggaatggatagacagtg
tacttaagactgagctcacacataatctttttaaaaattggttattttat
ttatttacatttcaaatgttgccctccttcccagttttccctccgcaaac
ctcgatgccatcccctctccactcccctctgcctgtaagatggtgattcc
taacaccccccatccacccactcctgcctcacccctctagcatcccccta
tactagggcatcaaacctacacaggaccaagggcctctcctcccattgat
gccagaaaaggcaatcctctgctacttacgcagttggagccatgggtcct
tccctgtgtactctggttggtggtttagtccctgggagctctgggggttc
tggttagttgatattgttgttcttcctttggagtaacaattcccttcccc
taactcttccattggagtcctctggctcagtctgaaggttggcttccagc
atccacatcagtgttgatcaggaagagcttctcagggaacagctatacct
ggctcctgtcaacaagcacttcttggcatcagcaatagtgtctgggtttt
ggtgtcttcagatggtatggatccctaggtggggtagtttctagatggca
tttccttcagtctctgctcactctttctctgcatttcctttagacaagat
ccattctgtgtaaaattttcagttgggtgggtgcctcatcttcaatagga
gtcattgctatccaactgggaatatgtctctaccagtctaggctcccctt
gtgggatttaagctatgtaaatctccgatgtctggaaatctggctcttga
ctcttgggagcatctagtatgaac
gaattcatttgtgaagttgaaaatattctctagaacctatttttaagcaa
gtgataatatgtgacacttttgtattcagaaattttagtaatggatatga
tttgaccacttcttaaattgcttgtgtttttggatttattgtagccaatg
cctttttctctggggtaaatttatttgctgctagtaaaatttttaaaaaa
tgagacctaaaattagattcttaagtcactgatgcaaaaccctctgaagt
agttcttgtgcagtccttcagaagttcaaagaaagattgttataaagatc
tactttgattttgctgttttttaactcaatgaatctgatcactctttaag
tactcacatcaccagttgctttccatgtcatgagtgaggcagtaacaaag
gtggaccttgccatagagtttatgaaacatggatttattctaaatctatg
tcaaagctctagacatatggcacagtagataaaggtgcttgccacagaga
tgggtgatctgagtcagactccagaagacagagacagagagagactcact
aacactccactaataaatagtaaaataaaaattaaaaactaaagtctcct
taattataagtcttattcaaatgtattatatttttacaaagatgattaac
tcacaagttgttttcaatgtttatagttaatactggaaatttttgtcttt
ttaatttctactctttgcttacatatatacttgcaaacaaattggttgtt
tcaaagattagctttattctataattcagtttgctgctccaaatacccaa
atacatgatatcatctgtctttaaaacttttgccctaaaagaataaactt
ctatatctgacttccaaatttttgtaacagtgctttatgaaatatcttat
aactatgcactgtgtgctgccatcccatttctgataaacatgctgcccac
tgatcatgctcaaaagcagtgagatactatgagaatgtgagttttcttat
gtgagcagaaagcattactagaatatgcatttatttccagtcttatctct
agaaccttgtttagatgcaggactgatttgctagttaagtcatatttatt
acatgcacacctgtattaacttgctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47412027_47413151
seq2: B6Ng01-282E17.g_65_1194 (reverse)

seq1  AAAACAGCAAGTT-ATACAGTTGTGCATGTA--TAATATGACTTTAATTA  47
      ||||||||||||| |||||| ||||||||||   |||||||| |||| ||
seq2  AAAACAGCAAGTTAATACAGGTGTGCATGTAATAAATATGAC-TTAACTA  49

seq1  GCAATTCAGTTCTGCATCTAAAC-AGGTTCTAGAGAT-AGACTGGAATTA  95
      |||| ||||| |||||||||||| ||||||||||||| ||||||||| ||
seq2  GCAAATCAGTCCTGCATCTAAACAAGGTTCTAGAGATAAGACTGGAAATA  99

seq1  AATGCATA-TCTAGTAATGCTTTCTTGCTCACATA--GAAACTCACATTC  142
      |||||||| ||||||||||||||| ||||||||||   ||||||||||||
seq2  AATGCATATTCTAGTAATGCTTTC-TGCTCACATAAGAAAACTCACATTC  148

seq1  TCATAGTATCTTCACTGCTTTTGAGCATGATCAGTGGGCAGCATGTTTAT  192
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTATC-TCACTGCTTTTGAGCATGATCAGTGGGCAGCATGTTTAT  197

seq1  CAGAAATGGGATGGCAGCACACAGTGCATAGTTATAAGATATTTCATAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGGATGGCAGCACACAGTGCATAGTTATAAGATATTTCATAAA  247

seq1  GCACTGTTACAAAAATTTGGAAGTCAGATATAGAAGTTTATTCTTTTAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTTACAAAAATTTGGAAGTCAGATATAGAAGTTTATTCTTTTAGG  297

seq1  GCAAAAGTTTTAAAGACAGATGATATCATGTATTTGGGTATTTGGAGCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTTTTAAAGACAGATGATATCATGTATTTGGGTATTTGGAGCAG  347

seq1  CAAACTGAATTATAGAATAAAGCTAATCTTTGAAACAACCAATTTGTTTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAATTATAGAATAAAGCTAATCTTTGAAACAACCAATTTGTTTG  397

seq1  CAAGTATATATGTAAGCAAAGAGTAGAAATTAAAAAGACAAAAATTTCCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATATATGTAAGCAAAGAGTAGAAATTAAAAAGACAAAAATTTCCA  447

seq1  GTATTAACTATAAACATTGAAAACAACTTGTGAGTTAATCATCTTTGTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACTATAAACATTGAAAACAACTTGTGAGTTAATCATCTTTGTAA  497

seq1  AAATATAATACATTTGAATAAGACTTATAATTAAGGAGACTTTAGTTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATACATTTGAATAAGACTTATAATTAAGGAGACTTTAGTTTTT  547

seq1  AATTTTTATTTTACTATTTATTAGTGGAGTGTTAGTGAGTCTCTCTCTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTACTATTTATTAGTGGAGTGTTAGTGAGTCTCTCTCTGT  597

seq1  CTCTGTCTTCTGGAGTCTGACTCAGATCACCCATCTCTGTGGCAAGCACC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCTGGAGTCTGACTCAGATCACCCATCTCTGTGGCAAGCACC  647

seq1  TTTATCTACTGTGCCATATGTCTAGAGCTTTGACATAGATTTAGAATAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTACTGTGCCATATGTCTAGAGCTTTGACATAGATTTAGAATAAA  697

seq1  TCCATGTTTCATAAACTCTATGGCAAGGTCCACCTTTGTTACTGCCTCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTTCATAAACTCTATGGCAAGGTCCACCTTTGTTACTGCCTCAC  747

seq1  TCATGACATGGAAAGCAACTGGTGATGTGAGTACTTAAAGAGTGATCAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACATGGAAAGCAACTGGTGATGTGAGTACTTAAAGAGTGATCAGA  797

seq1  TTCATTGAGTTAAAAAACAGCAAAATCAAAGTAGATCTTTATAACAATCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGAGTTAAAAAACAGCAAAATCAAAGTAGATCTTTATAACAATCT  847

seq1  TTCTTTGAACTTCTGAAGGACTGCACAAGAACTACTTCAGAGGGTTTTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAACTTCTGAAGGACTGCACAAGAACTACTTCAGAGGGTTTTGC  897

seq1  ATCAGTGACTTAAGAATCTAATTTTAGGTCTCATTTTTTAAAAATTTTAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGACTTAAGAATCTAATTTTAGGTCTCATTTTTTAAAAATTTTAC  947

seq1  TAGCAGCAAATAAATTTACCCCAGAGAAAAAGGCATTGGCTACAATAAAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAAATAAATTTACCCCAGAGAAAAAGGCATTGGCTACAATAAAT  997

seq1  CCAAAAACACAAGCAATTTAAGAAGTGGTCAAATCATATCCATTACTAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACACAAGCAATTTAAGAAGTGGTCAAATCATATCCATTACTAAA  1047

seq1  ATTTCTGAATACAAAAGTGTCACATATTATCACTTGCTTAAAAATAGGTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAATACAAAAGTGTCACATATTATCACTTGCTTAAAAATAGGTT  1097

seq1  CTAGAGAATATTTTCAACTTCACAAATGAATTC  1125
      |||||||||||||||||||||||||||||||||
seq2  CTAGAGAATATTTTCAACTTCACAAATGAATTC  1130