BAC Information

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BAC

Clone NameB6Ng01-283A09
Chromosome16 (Build37)7 (Build37)
Map Location 93,846,406 - 93,846,71612,834,340 - 12,835,467
singlet/doubletsingletsinglet
Overlap geneMorc3
Upstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2
Downstream geneChaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283A09.bB6Ng01-283A09.g
ACCGA082088GA082089
length9981,128
definitionB6Ng01-283A09.b B6Ng01-283A09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,846,406 - 93,846,716)(12,834,340 - 12,835,467)
sequence
gaattcaatgaaaataatgacacagcatacccaaacttatgagacacagt
gaaagcagtggtaagaggaaagttaatagcactaagtgccctcgtaagga
aattggagagattctatactagcaacttaacagcacacctgaaagcccta
gataaaaagaaggaaatacacccaggaggagtagatgacaggaaataatc
aaactcagggctcaaatcaaccaaatagaaacaaatagaactttacaaag
aatcaacaaaacccaaagcttgttctttgagaaaatcaacaagataaaaa
acaaaaacaaaaacaaaaacaaaaaaccaaaaagaccctatccaaactaa
ttaaagggctgaggggccatatccaaattaacaaaaccagaaatgaaaaa
ggagacataacaacagaatctgagcaaattaaaaaaaaagatcatcaggt
actactacatacacctatactcaacaaaactggaaaatctggacgaaatt
gaggattttctagatagataccatgtacaaaagttaaatcaacaccaggt
aaactatctaaactggcccatactccctaaagaaataatagaagtcatta
aaattcttccaaagaaaaaaaacaaaaatacaaaactcaaggccaggtgg
cttgagtgaaaaataaaccagactttcaaatgagagtgagtaccaacact
cctcaaactattcaatagaatagaaacagaaggaacactacctaattcat
tctatgaagccacaattattctgatacctaaaccacacaatgacccaaca
aagaaagagaacttcagaccaattttctttatgaatatcgatggcaaaag
attcaataatattctagcaattcgaatccaagaatacatcaaaactatca
ttcaccaagatcaagtaggcttcattgcagggatgcaatgttggttcaat
atatgaaaatccattaatgtaattcactatagaaacacacttttaaaa
gaattctggggactttttagaaggtatataaatgttaggtcccaagagac
atggtgtattggtagttgaattcttggttgtcgttgtttgatattggttg
aggtttgttaagaagtcatgcacaaagaagaagcaacaagaagaaattag
atatcttgatagcaacaatcaaacttgccccaaggaactcgatatcccta
atcagtggaatgtagtctaatcagactatcactcctgttcctctctacct
tttttcttcttctcctatgtagtgtgccctacttgatttgtgtctgtata
taatgtttgtatagacttttatgtttatttcattcagatttcatctttag
tttatttccatatgtctttcacaaaacaggaccattttccttacttttgt
tactataaaactgagtgtattttaaaatcttctctggctcaattcttaga
ctattgtctaatacattatctgtgaccttttccctcaatattacagaaat
tatcacttggagcaaaggtccaaatcatctccggtatttattctcatatt
tttggttcttctgcttagtagtttgccttatcttattatggaattgtttt
accataaaaaaattggatataaatatacttccaaaatgcaaggttgctaa
attctaatattaatcttagtttaaaattttcctgagaatatttttgtgat
aaaaatgtcaaaggtgataaaagatgagatactgctgtcacatagataga
attaatataggtttgataattacactggagttccattatgtaatctgtgt
tttatgtaggacattcatactaagctccgagtcacatatgtgatgacagt
gctacatttggattctggaacacctcttttgttaggcaagcattaagcat
ccataatttccacatacattaaactgtcttatgtagcaacataatctaag
taaagttggatgagaaaacgtctattgactattgcaaattttctatgatc
ttgaatacattttaaacacaaaatcactttcaaatgcttatatagcaaaa
aatataaacttctccactcttgtttcatggaaatataaattcttactata
attgtattgaaagagttaagttacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93846406_93846716
seq2: B6Ng01-283A09.b_175_359 (reverse)

seq1  GGTTTGTTTGTTTTTATTTTTGTTTTTGTTTTTTAAATCATATATATTCC  50
      ||||| ||||||||| ||||||||||||||||||                
seq2  GGTTT-TTTGTTTTTGTTTTTGTTTTTGTTTTTT----------------  33

seq1  AAATCCTGTCTGTATATACTTTCTTTACTCTGTGTCTAAAGTTGAGGGTT  100
        ||| ||           ||  ||| |||       ||||   | | ||
seq2  --ATCTTG-----------TTGATTTTCTC-------AAAGAACAAGCTT  63

seq1  TGTTTTTCTTTCTTTCCTGGAAATATACAATGGAAATCTTTAACATAATA  150
      ||  |||  ||  ||| |            || |||              
seq2  TGGGTTTTGTTGATTCTT------------TGTAAA--------------  87

seq1  TGGTTATGGTTGTGGTGTTTGCTTTTTTATTTTTTTATTAGTTGGTTGGT  200
                              || ||||| |||  || ||||||| |
seq2  -----------------------GTTCTATTTGTTT-CTATTTGGTTGAT  113

seq1  CTCACTAGGTAGCCCTGACTGGTCTTAAAGTCAGAGATTGCCTGCCTCTC  250
       |        |||||||| |    ||          ||| ||||      
seq2  TT-------GAGCCCTGAGTTTGATT----------ATTTCCTG-----T  141

seq1  CATCTCCCTCCTGTGTGCTGGGTGCCACCATGCCTAGCTGTGTTACTTTT  300
      |||||  ||||    | |||||||          ||  | |  | |||||
seq2  CATCT-ACTCC----TCCTGGGTG----------TA--TTTCCTTCTTTT  174

seq1  TATCTAGGGCT  311
      |||||||||||
seq2  TATCTAGGGCT  185

seq1: chr7_12834340_12835467
seq2: B6Ng01-283A09.g_68_1195 (reverse)

seq1  AAATGT-ACTT-ACTCTT--CATACAATTATAGTAAG-ATTTATATTTCC  45
      |||||| |||| ||||||   |||||||||||||||| ||||||||||||
seq2  AAATGTAACTTAACTCTTTCAATACAATTATAGTAAGAATTTATATTTCC  50

seq1  ATGAAACAAGAAGTGAGAAGTTTTATTATTTTTGCTAATTATTAAGCATT  95
      |||||||||||   |||||| |||||  |||||||||  || ||||||||
seq2  ATGAAACAAGAGTGGAGAAG-TTTATATTTTTTGCTA--TA-TAAGCATT  96

seq1  TGAAAGTGATTTTGTGTTTAAAATGTTATTCAAGATCATAGAAAATTTGC  145
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAAAGTGATTTTGTGTTTAAAATG-TATTCAAGATCATAGAAAATTTGC  145

seq1  AATAGTCAATAGACGTTTTCTCATCCAACTTTACTTAGATTATGTTGCTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAATAGACGTTTTCTCATCCAACTTTACTTAGATTATGTTGCTA  195

seq1  CATAAGACAGTTTAATGTATGTGGAAATTATGGATGCTTAATGCTTGCCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACAGTTTAATGTATGTGGAAATTATGGATGCTTAATGCTTGCCT  245

seq1  AACAAAAGAGGTGTTCCAGAATCCAAATGTAGCACTGTCATCACATATGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGAGGTGTTCCAGAATCCAAATGTAGCACTGTCATCACATATGT  295

seq1  GACTCGGAGCTTAGTATGAATGTCCTACATAAAACACAGATTACATAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGGAGCTTAGTATGAATGTCCTACATAAAACACAGATTACATAATG  345

seq1  GAACTCCAGTGTAATTATCAAACCTATATTAATTCTATCTATGTGACAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCAGTGTAATTATCAAACCTATATTAATTCTATCTATGTGACAGC  395

seq1  AGTATCTCATCTTTTATCACCTTTGACATTTTTATCACAAAAATATTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCATCTTTTATCACCTTTGACATTTTTATCACAAAAATATTCTC  445

seq1  AGGAAAATTTTAAACTAAGATTAATATTAGAATTTAGCAACCTTGCATTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTTTAAACTAAGATTAATATTAGAATTTAGCAACCTTGCATTT  495

seq1  TGGAAGTATATTTATATCCAATTTTTTTATGGTAAAACAATTCCATAATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTATATTTATATCCAATTTTTTTATGGTAAAACAATTCCATAATA  545

seq1  AGATAAGGCAAACTACTAAGCAGAAGAACCAAAAATATGAGAATAAATAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGCAAACTACTAAGCAGAAGAACCAAAAATATGAGAATAAATAC  595

seq1  CGGAGATGATTTGGACCTTTGCTCCAAGTGATAATTTCTGTAATATTGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGATGATTTGGACCTTTGCTCCAAGTGATAATTTCTGTAATATTGAG  645

seq1  GGAAAAGGTCACAGATAATGTATTAGACAATAGTCTAAGAATTGAGCCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGTCACAGATAATGTATTAGACAATAGTCTAAGAATTGAGCCAG  695

seq1  AGAAGATTTTAAAATACACTCAGTTTTATAGTAACAAAAGTAAGGAAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTTTAAAATACACTCAGTTTTATAGTAACAAAAGTAAGGAAAAT  745

seq1  GGTCCTGTTTTGTGAAAGACATATGGAAATAAACTAAAGATGAAATCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGTTTTGTGAAAGACATATGGAAATAAACTAAAGATGAAATCTGA  795

seq1  ATGAAATAAACATAAAAGTCTATACAAACATTATATACAGACACAAATCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAACATAAAAGTCTATACAAACATTATATACAGACACAAATCA  845

seq1  AGTAGGGCACACTACATAGGAGAAGAAGAAAAAAGGTAGAGAGGAACAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCACACTACATAGGAGAAGAAGAAAAAAGGTAGAGAGGAACAGG  895

seq1  AGTGATAGTCTGATTAGACTACATTCCACTGATTAGGGATATCGAGTTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGTCTGATTAGACTACATTCCACTGATTAGGGATATCGAGTTCC  945

seq1  TTGGGGCAAGTTTGATTGTTGCTATCAAGATATCTAATTTCTTCTTGTTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAAGTTTGATTGTTGCTATCAAGATATCTAATTTCTTCTTGTTG  995

seq1  CTTCTTCTTTGTGCATGACTTCTTAACAAACCTCAACCAATATCAAACAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTTGTGCATGACTTCTTAACAAACCTCAACCAATATCAAACAA  1045

seq1  CGACAACCAAGAATTCAACTACCAATACACCATGTCTCTTGGGACCTAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAACCAAGAATTCAACTACCAATACACCATGTCTCTTGGGACCTAAC  1095

seq1  ATTTATATACCTTCTAAAAAGTCCCCAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ATTTATATACCTTCTAAAAAGTCCCCAGAATTC  1128