BAC Information

Click to search

BAC

Clone NameB6Ng01-284J04
Chromosome16 (Build37)
Map Location 57,758,883 - 57,898,916
singlet/doubletdoublet
Overlap geneLOC435480, LOC629342
Upstream geneGpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1
Downstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284J04.bB6Ng01-284J04.g
ACCGA083240GA083241
length1,1681,102
definitionB6Ng01-284J04.b B6Ng01-284J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,897,733 - 57,898,916)(57,758,883 - 57,759,992)
sequence
gaattccttcactgaagtccaaagtcattttgagctctgggtaacagagg
gcaggaaataaaagtgttaaagtatgacttacagtttaagtcaaactatg
gttgttttaagtcaataatgaaatttactgcctattattcctaatatgca
atcttgagacatgttggtgaaaatttgtcattttatagtaaataaggaca
gctttattagattgcacctagagttctgtgtctaatttaaggtacatcaa
tctagaaaaaaaaatccagactaagtaagttataaaaggaggatttagtc
atatattgtaaactatgaccagagaaaaatcatgaagaactgacctagga
ggaaagagagactttgaaagcctatagttgttggcataatatgatgaaaa
cattttgagcaaaaggtaattagatgtcagtattggttttcaacactggc
ttgccacaaccttggatcaccacagagagtctcagttgagtaattgtcta
gattaagttgacctatgagcatgtctgtgattatcttgattgttaatttg
ctcaggccataccattccctaggcagagcatcctaaaccatgggagatgg
gaaaatgttagatgaaaggataaagtaggcagcacagtatgctcatatgt
ctctgctcttgactggaattgtgatgtgagtacttgtataagctttctca
ttgacttcctctcaatgatggacttaaatctgaaagtgtaggctgaacag
caaatctgtatcactcttttgttgcctaatgatcagagatcacagtaaca
caaatgaaaccagaaccaggcctgtttcctgtaacttccaaagggttaga
agataactccagaaagaatatcaagaaaaggaaggaactagaagagtaga
attctaacacatttggtctaatatgaaatatgttatttgaaagttaataa
ttgtgagagtgaatttcaatcggcaatttgattagatttgcaattatctg
gtaatctgaccttctctcagctactgtgtcagatagctgacacatggacc
ggatgctcaacttgtgagtcaaaatatgctgtttcctaagtgcttgatag
tatttttgttcacaggatgaaaatagtacaatgcaggaattcttctttag
aaaagttttgtagaggcg
gaattcttttctatgcttttgagacaccgtacatagagagaaaaactaag
tacctgtgctttgcgtatacggaagtctgagcaaggtggcataaacagtg
gtttctttagctctatttacttattgtgtcctgtgtagttgcaagaagat
gatgggaaggtgtgacttctctagggcataagcagaatgccaggtggggc
taatgtaagggtctgttctgtgtgtctgaggggcccaacatctttgtctg
ttgtaggtgtgagtgaccctccaatatacgtgacatcctttagttttcaa
gggtctctggttggaacacaatgaaatctgattggaaaagctgcatattc
acatctatgttctcacatagctgactctcagttatgggtatctgtttccc
ctaggggggtttcaaggtccagtgactcttcttgtctgtcactcacaggt
gcttaaaagtgcgcatgagactggttttcggtataagcaagaaccacaca
gaggtatttctacttgaagcaaatagggtgatttcaagtatgggaagtaa
aaattcactttctatcatgtgacccatcaggtttttgttgttgtttttct
gagagacagggtttttctgtatagccctggctgtcctggaactcactctg
tagaccaggctggcctcgaactcagaaatatgcctgcctctgcctctcaa
gtgctgggattcaaggcgtgcatcaccacagcctggctctgacccatcag
ggtttttttttccccctccaattttttattaggtatttacttcatttaca
tttcaaatgctatgctgaaagtcccccatacccccactccccactcctct
accacccactcccacttcttggccctggtgttttccctgtactggggcat
tataaagtttgcaagatcaaggagcctctcttcccaatgatggccgacta
ggcatcttctgctacataatgcagctagagacatgagctctgggggtact
gatagtcatatgtgtccaccaataggatgcagcgcccttcaagtcttgag
tgccttcctcttagacttctccatggggggccctggttcatacaaatgac
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_57897733_57898916
seq2: B6Ng01-284J04.b_45_1212 (reverse)

seq1  CGCCT---CAAAACTTTCTAAAAGAAGGATTCCTGCATTTGTTACTTATT  47
      |||||   |||||||||   ||||||| |||||||||||   ||||   |
seq2  CGCCTCTACAAAACTTTTCTAAAGAAGAATTCCTGCATT--GTACT--AT  46

seq1  TTTCACTCCTGTGA--CAAAATACCTAATCAAAGCAACTTAAGGGAAACA  95
      ||||| ||||||||   |||||||   ||| |||| |||||  |||||||
seq2  TTTCA-TCCTGTGAACAAAAATAC--TATC-AAGC-ACTTA--GGAAACA  89

seq1  GGCATTATTTTGACTCACAGTTTGAGCATCCGGTCCATTGTGGTCAGGCT  145
       ||| ||||||||||||||  |||||||||||||||| ||| |||| |||
seq2  -GCA-TATTTTGACTCACAAGTTGAGCATCCGGTCCA-TGT-GTCA-GCT  134

seq1  ATCTTGACAACAGTAGCCTGAGGAAGAAGGTCAGATTACCAGATAATTGC  195
      ||| |||| ||||||| |||||  ||||||||||||||||||||||||||
seq2  ATC-TGAC-ACAGTAG-CTGAG--AGAAGGTCAGATTACCAGATAATTGC  179

seq1  AAATCTAATCAAATTGCCGATTGAAATTCACTCTCACAATTATTAACTTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATCAAATTGCCGATTGAAATTCACTCTCACAATTATTAACTTT  229

seq1  CAAATAACATATTTCATATTAGACCAAATGTGTTAGAATTCTACTCTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACATATTTCATATTAGACCAAATGTGTTAGAATTCTACTCTTCT  279

seq1  AGTTCCTTCCTTTTCTTGATATTCTTTCTGGAGTTATCTTCTAACCCTTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTCCTTTTCTTGATATTCTTTCTGGAGTTATCTTCTAACCCTTT  329

seq1  GGAAGTTACAGGAAACAGGCCTGGTTCTGGTTTCATTTGTGTTACTGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTACAGGAAACAGGCCTGGTTCTGGTTTCATTTGTGTTACTGTGA  379

seq1  TCTCTGATCATTAGGCAACAAAAGAGTGATACAGATTTGCTGTTCAGCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATCATTAGGCAACAAAAGAGTGATACAGATTTGCTGTTCAGCCT  429

seq1  ACACTTTCAGATTTAAGTCCATCATTGAGAGGAAGTCAATGAGAAAGCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCAGATTTAAGTCCATCATTGAGAGGAAGTCAATGAGAAAGCTT  479

seq1  ATACAAGTACTCACATCACAATTCCAGTCAAGAGCAGAGACATATGAGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTACTCACATCACAATTCCAGTCAAGAGCAGAGACATATGAGCA  529

seq1  TACTGTGCTGCCTACTTTATCCTTTCATCTAACATTTTCCCATCTCCCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCTGCCTACTTTATCCTTTCATCTAACATTTTCCCATCTCCCAT  579

seq1  GGTTTAGGATGCTCTGCCTAGGGAATGGTATGGCCTGAGCAAATTAACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGATGCTCTGCCTAGGGAATGGTATGGCCTGAGCAAATTAACAA  629

seq1  TCAAGATAATCACAGACATGCTCATAGGTCAACTTAATCTAGACAATTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATAATCACAGACATGCTCATAGGTCAACTTAATCTAGACAATTAC  679

seq1  TCAACTGAGACTCTCTGTGGTGATCCAAGGTTGTGGCAAGCCAGTGTTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAGACTCTCTGTGGTGATCCAAGGTTGTGGCAAGCCAGTGTTGA  729

seq1  AAACCAATACTGACATCTAATTACCTTTTGCTCAAAATGTTTTCATCATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATACTGACATCTAATTACCTTTTGCTCAAAATGTTTTCATCATA  779

seq1  TTATGCCAACAACTATAGGCTTTCAAAGTCTCTCTTTCCTCCTAGGTCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCAACAACTATAGGCTTTCAAAGTCTCTCTTTCCTCCTAGGTCAG  829

seq1  TTCTTCATGATTTTTCTCTGGTCATAGTTTACAATATATGACTAAATCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGATTTTTCTCTGGTCATAGTTTACAATATATGACTAAATCCT  879

seq1  CCTTTTATAACTTACTTAGTCTGGATTTTTTTTTCTAGATTGATGTACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATAACTTACTTAGTCTGGATTTTTTTTTCTAGATTGATGTACCT  929

seq1  TAAATTAGACACAGAACTCTAGGTGCAATCTAATAAAGCTGTCCTTATTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGACACAGAACTCTAGGTGCAATCTAATAAAGCTGTCCTTATTT  979

seq1  ACTATAAAATGACAAATTTTCACCAACATGTCTCAAGATTGCATATTAGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAATGACAAATTTTCACCAACATGTCTCAAGATTGCATATTAGG  1029

seq1  AATAATAGGCAGTAAATTTCATTATTGACTTAAAACAACCATAGTTTGAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGGCAGTAAATTTCATTATTGACTTAAAACAACCATAGTTTGAC  1079

seq1  TTAAACTGTAAGTCATACTTTAACACTTTTATTTCCTGCCCTCTGTTACC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTAAGTCATACTTTAACACTTTTATTTCCTGCCCTCTGTTACC  1129

seq1  CAGAGCTCAAAATGACTTTGGACTTCAGTGAAGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCAAAATGACTTTGGACTTCAGTGAAGGAATTC  1168

seq1: chr16_57758883_57759992
seq2: B6Ng01-284J04.g_66_1167

seq1  GAATTCTTTTCTATGCTTTTGAGACACCGTACATAGAGAGAAAAACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTATGCTTTTGAGACACCGTACATAGAGAGAAAAACTAAG  50

seq1  TACCTGTGCTTTGCGTATACGGAAGTCTGAGCAAGGTGGCATAAACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGCTTTGCGTATACGGAAGTCTGAGCAAGGTGGCATAAACAGTG  100

seq1  GTTTCTTTAGCTCTATTTACTTATTGTGTCCTGTGTAGTTGCAAGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTAGCTCTATTTACTTATTGTGTCCTGTGTAGTTGCAAGAAGAT  150

seq1  GATGGGAAGGTGTGACTTCTCTAGGGCATAAGCAGAATGCCAGGTGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGGTGTGACTTCTCTAGGGCATAAGCAGAATGCCAGGTGGGGC  200

seq1  TAATGTAAGGGTCTGTTCTGTGTGTCTGAGGGGCCCAACATCTTTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAAGGGTCTGTTCTGTGTGTCTGAGGGGCCCAACATCTTTGTCTG  250

seq1  TTGTAGGTGTGAGTGACCCTCCAATATACGTGACATCCTTTAGTTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTGTGAGTGACCCTCCAATATACGTGACATCCTTTAGTTTTCAA  300

seq1  GGGTCTCTGGTTGGAACACAATGAAATCTGATTGGAAAAGCTGCATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTGGTTGGAACACAATGAAATCTGATTGGAAAAGCTGCATATTC  350

seq1  ACATCTATGTTCTCACATAGCTGACTCTCAGTTATGGGTATCTGTTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATGTTCTCACATAGCTGACTCTCAGTTATGGGTATCTGTTTCCC  400

seq1  CTAGGGGGGTTTCAAGGTCCAGTGACTCTTCTTGTCTGTCACTCACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGGGTTTCAAGGTCCAGTGACTCTTCTTGTCTGTCACTCACAGGT  450

seq1  GCTTAAAAGTGCGCATGAGACTGGTTTTCGGTATAAGCAAGAACCACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAGTGCGCATGAGACTGGTTTTCGGTATAAGCAAGAACCACACA  500

seq1  GAGGTATTTCTACTTGAAGCAAATAGGGTGATTTCAAGTATGGGAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTTCTACTTGAAGCAAATAGGGTGATTTCAAGTATGGGAAGTAA  550

seq1  AAATTCACTTTCTATCATGTGACCCATCAGGTTTTTGTTGTTGTTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTTTCTATCATGTGACCCATCAGGTTTTTGTTGTTGTTTTTCT  600

seq1  GAGAGACAGGGTTTTTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGGGTTTTTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTG  650

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATATGCCTGCCTCTGCCTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATATGCCTGCCTCTGCCTCTCAA  700

seq1  GTGCTGGGATTCAAGGCGTGCATCACCACAGCCTGGCTCTGACCCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTCAAGGCGTGCATCACCACAGCCTGGCTCTGACCCATCAG  750

seq1  GG-TTTTTTTTCCCCCTCCAATTTTTTATTAGGTATTTACTTCATTTACA  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTTCCCCCTCCAATTTTTTATTAGGTATTTACTTCATTTACA  800

seq1  TTTCAAATGCTATGCTGAAAGTCCCCCATACCCCCACTCCCCACTCCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGCTATGCTGAAAGTCCCCCATACCCCCACTCCCCACTCCTCT  850

seq1  ACCCACCCACTCCCACTTCTTGGCCCTGGTGTTTTCCCTGTACTGGGGCA  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CCACCCACTCCCACTTCTTGGCCCTGGTGTTTTCCCTGTACTGGGGCA  899

seq1  -TATAAAGTTTGCAAGATCAAGGAGCCTCTCTTCCCAATGATGGCCGACT  948
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTTTGCAAGATCAAGGAGCCTCTCTTCCCAATGATGGCCGACT  949

seq1  AGGCCATCTTCTGCTACAT-ATGCAGCTAGAGACATGAGCTCTGGGGGTA  997
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGG-CATCTTCTGCTACATAATGCAGCTAGAGACATGAGCTCTGGGGGTA  998

seq1  CTGGTTAGTTCATATTGTTGTTCCACCAATAGGGTTGCAGCGCCCTTCAG  1047
      || | ||| ||||| |||   |||||||||| || |||||||||||||| 
seq2  CT-GATAG-TCATA-TGT--GTCCACCAATA-GGATGCAGCGCCCTTCAA  1042

seq1  TTCTTTGGGTG-CTTTCTC-TAG-CTCCTCCATTGGGGGCCCTGTGTTCC  1094
       || ||| ||| ||| ||| ||| || |||||| |||||||||| ||| |
seq2  GTC-TTGAGTGCCTTCCTCTTAGACTTCTCCATGGGGGGCCCTG-GTT-C  1089

seq1  ATACAATAGCTGACTG  1110
      ||||||    ||||||
seq2  ATACAA---ATGACTG  1102