BAC Information

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BAC

Clone NameB6Ng01-284N12
Chromosome16 (Build37)
Map Location 5,131,615 - 5,285,650
singlet/doubletdoublet
Overlap genePpl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Upstream geneCrebbp, EG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284N12.bB6Ng01-284N12.g
ACCGA083445GA083446
length327617
definitionB6Ng01-284N12.b B6Ng01-284N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,285,324 - 5,285,650)(5,131,615 - 5,132,229)
sequence
agcctgggaaagctgtgggccaactgcccttgttcctgtccacaggatac
ttgggcttcctgagagcacaactgagtccaaagagccaagaagaagctgc
tgtgacttcggacttttctaagttaaccttggggttggcaagatggctgc
acaggtaaaggtacttgctgacaagcctgacagcctgagttggattctca
gggtctacagagagagaaccaactttgacaaattactctctgacctccat
tactcacaccataacacataagcttacacagacacacaagtaaatgactg
tttaaatgatggtggtggtggtggtgt
gaattccacccctccctcaatctcagcaacattaccagtctcccccaaac
cggttattaaccgaatgaatacattaggcttatcaaaaccgacgtgggct
gtctctccatccagacacatcaagacatgtcattcgcttctcaggcggcc
ctgagaactcagagatcgcagacgcggccagtttcggggataggggggtg
gggaagcgccaggagccacacccctgagaaatcacgcagtgaaaaattgg
tctgtccccacccagccgggccgagcgggagtctagagagcctgagattg
ccttagcatgtcccccggggccccaggacccaccgcggcctccggcctcc
gagtgctccagcgctggcaggcaggtgcagccggggacaggtggctcacc
ctcggagccaccagatctcacaacccaacgccagcagcagcacctgcacg
gtctacaattcccgcaggagatcaccctacacacaacttattttccgagt
cccagggtggaaacacaacgtttcatgaccgatattccagcttcaggaca
accttgtactccttactcaagtcctcaccatctaggcccccaaagtagcg
ctatcatgggggctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5285324_5285650
seq2: B6Ng01-284N12.b_53_379 (reverse)

seq1  ACACCACCACCACCACCATCATTTAAACAGTCATTTACTTGTGTGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCACCACCACCATCATTTAAACAGTCATTTACTTGTGTGTCTGT  50

seq1  GTAAGCTTATGTGTTATGGTGTGAGTAATGGAGGTCAGAGAGTAATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTTATGTGTTATGGTGTGAGTAATGGAGGTCAGAGAGTAATTTGT  100

seq1  CAAAGTTGGTTCTCTCTCTGTAGACCCTGAGAATCCAACTCAGGCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGGTTCTCTCTCTGTAGACCCTGAGAATCCAACTCAGGCTGTCA  150

seq1  GGCTTGTCAGCAAGTACCTTTACCTGTGCAGCCATCTTGCCAACCCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCAGCAAGTACCTTTACCTGTGCAGCCATCTTGCCAACCCCAAG  200

seq1  GTTAACTTAGAAAAGTCCGAAGTCACAGCAGCTTCTTCTTGGCTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTAGAAAAGTCCGAAGTCACAGCAGCTTCTTCTTGGCTCTTTGG  250

seq1  ACTCAGTTGTGCTCTCAGGAAGCCCAAGTATCCTGTGGACAGGAACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTGTGCTCTCAGGAAGCCCAAGTATCCTGTGGACAGGAACAAGG  300

seq1  GCAGTTGGCCCACAGCTTTCCCAGGCT  327
      |||||||||||||||||||||||||||
seq2  GCAGTTGGCCCACAGCTTTCCCAGGCT  327

seq1: chr16_5131615_5132229
seq2: B6Ng01-284N12.g_66_682

seq1  GAATTCCACCCCTCCCTCAATCTCAGCAACATTACCAGTCTCCCCCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCCTCCCTCAATCTCAGCAACATTACCAGTCTCCCCCAAAC  50

seq1  CGGTTATTAACCGAATGAATACATTAGGCTTATCAAAACCGACGTGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATTAACCGAATGAATACATTAGGCTTATCAAAACCGACGTGGGCT  100

seq1  GTCTCTCCATCCAGACACATCAAGACATGTCATTCGCTTCTCAGGCGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCATCCAGACACATCAAGACATGTCATTCGCTTCTCAGGCGGCC  150

seq1  CTGAGAACTCAGAGATCGCAGACGCGGCCAGTTTCGGGGATAGGGGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTCAGAGATCGCAGACGCGGCCAGTTTCGGGGATAGGGGGGTG  200

seq1  GGGAAGCGCCAGGAGCCACACCCCTGAGAAATCACGCAGTGAAAAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCGCCAGGAGCCACACCCCTGAGAAATCACGCAGTGAAAAATTGG  250

seq1  TCTGTCCCCACCCAGCCGGGCCGAGCGGGAGTCTAGAGAGCCTGAGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCCACCCAGCCGGGCCGAGCGGGAGTCTAGAGAGCCTGAGATTG  300

seq1  CCTTAGCATGTCCCCCGGGGCCCCAGGACCCACCGCGGCCTCCGGCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCATGTCCCCCGGGGCCCCAGGACCCACCGCGGCCTCCGGCCTCC  350

seq1  GAGTGCTCCAGCGCTGGCAGGCAGGTGCAGCCGGGGACAGGTGGCTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCCAGCGCTGGCAGGCAGGTGCAGCCGGGGACAGGTGGCTCACC  400

seq1  CTCGGAGCCACCAGATCTCACAACCCAACGCCAGCAGCAGCACCTGCACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAGCCACCAGATCTCACAACCCAACGCCAGCAGCAGCACCTGCACG  450

seq1  GTCTACAATTCCCGCAGGAGATCACCCTACACACAACTTATTTTCCGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAATTCCCGCAGGAGATCACCCTACACACAACTTATTTTCCGAGT  500

seq1  CCCAGGGTGGAAACACAACGTTTCATGACCGAGATTCCAGCTTCAGGACA  550
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCCAGGGTGGAAACACAACGTTTCATGACCGATATTCCAGCTTCAGGACA  550

seq1  ACCTTGTACTCCTTACTCAAGTCCCCACCATCTAGGCCCCCAAAGTAGCG  600
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCTTGTACTCCTTACTCAAGTCCTCACCATCTAGGCCCCCAAAGTAGCG  600

seq1  C-ATCAT-GGGGCTCTA  615
      | ||||| |||||||||
seq2  CTATCATGGGGGCTCTA  617