BAC Information

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BAC

Clone NameB6Ng01-286O19
Chromosome16 (Build37)
Map Location 64,853,554 - 65,019,579
singlet/doubletdoublet
Overlap geneCggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247
Upstream geneEpha3, LOC100043540, Ckt2, 4930453N24Rik, Zfp654, LOC433036
Downstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286O19.bB6Ng01-286O19.g
ACCGA084989GA084990
length1,1551,040
definitionB6Ng01-286O19.b B6Ng01-286O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,018,420 - 65,019,579)(64,853,554 - 64,854,580)
sequence
gaattcttccagtgttttttatgaccttttaattttttttaattaggtat
tttccttgtttacatttccaatgctatcccaaaagttccaacacaaaacc
acatgtatattcagacacggcaacctttttttcatttgaaggccaagaga
tttaaattcatttcagttttcttattctagcttcctttatccaggacttt
tttctcattttagtcaataatctggaagtttcaaaacattaactattatt
tgtaactaaaatatgcaatataaggacccctaaggcaaatgtggaccatt
ggccctctatacatgctgaggtaacaattccagaaagatccacttacccc
tatgtgctcaaacactcaagtttcttgttttatcaatcttactggcaatt
gatacttttgtttactttctgttttctgaggtgaaactttccccagctaa
attaccacaaaatggtaggcatgtgtgaatgtaaagcatatatacactat
agatgtatgtatgattaagtgaaatgaaactccaaaattgtctcaccata
gacagaaagaaaaagacttttagctattaaacaggatgtttaatatgttc
agtgttttcaagtttatataacaaagagttccattcaatgcttttaagga
aatagcattatttatggtttgctttggggcactaaataccaacacaagtt
tacatgcaatgagtatcttgcctggttttctaaatatcataagttggaag
gatatcaaaatattatgctaaatatgtatgttagtacttccaaaatgatt
tcagtaagtgcttataagaagtctcctattccagttgccatgaatatcat
tttggagagctcaggaccatatgccggatgacagacagcacaggatatag
attaaaagatgtactttaatggtgttatacaattatgaagaacaagctaa
gttaaattagaaagaaaaatagcagatattagagtagccctaagcaaaat
aagatcaggggatgagatgggaaaactccatattgttatatttgtatcct
tttacaaggttcacaatactgacaattccccttagcctagaccaataagg
gaaaataacaaaattgccaaatccaatgaaatccaaccttaaaggtgaca
agaat
gaattcttcagaacatacttgaagtatttcttcaacatgtttttaacaaa
attattcagtatagtagtatctgatgtcttgattattataaaaagttaaa
tcacaggcatagaagagtaagtcttgctaatcttttgttatcaaagtata
tttattatcttgggtttccagtgcttgtaattttatatagctgatagtcc
gttgataattttcagaagtttgggggcctagtgaagtgactttgagagtc
actaacaacactgagttagtccatgaaaccactgtcctcagctccaaaca
tgtgccagaacacaggtgctcacacatttagacttctgtaagaagtaaga
cacggccaggtatgctggcacatgtctgtgatgtgatccctgccattcag
gacaacattgaaagcccgctggacaacagggttgttcttggtgttttgag
ttttgttgttaggctaaatttagtgttaaactgcttctaaattatatggg
ttttgataaatggttatgggggggtcgttatttgaatttggctttttttt
tttcctgtttgtttcatttttgtttttgtttttgattgctgaggtcaaac
ctagaatttagctcatgctaagcagttgttctgcctctagtggacaccca
gctgttcatttactttttataaacatcaagttgtgcccagcacatattgg
gcactatgttaagggaaataaaaattagtcttcaatggaaattggaaacc
aatgttaaagaacatattgccttctcttgattatcaacttttagagaaaa
tacattatgttaatatttttccagaacatggtgtcataacagtttcagcc
tcagaattcaggaggtgacaaaagataggtctctgtctacatagttgaga
cttctgtctttgtttttggttagcttggttttctagactggaatttctct
gtggtaaccctggctgtcctggaactcaccttcataaaaaccaggcctgc
ctctgcccttcccaagtgctgggattaaaggccatgtacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_65018420_65019579
seq2: B6Ng01-286O19.b_46_1200 (reverse)

seq1  ATTCTTGTTCACTTCTAGGTTGTGATTTTCATTGTGATTTTGCTATTTTT  50
      ||||||||   |||  |||||| || |||||||| ||||| || | ||||
seq2  ATTCTTGTCACCTTTAAGGTTG-GA-TTTCATTG-GATTTGGC-AATTTT  46

seq1  GTTATTTTTCCTTATTTGGTCTA-GCTATGGG--ATTGTCAGTATTGTTG  97
      |||||||| ||||| |||||||| |||| |||  ||||||||||||| ||
seq2  GTTATTTTCCCTTA-TTGGTCTAGGCTAAGGGGAATTGTCAGTATTG-TG  94

seq1  AACCTTGTAAAAAGGATAC-AATATAACAATATGGAGTTTTTCCATCTCA  146
      |||||||| |||||||||| ||||||||||||||||||||| ||||||||
seq2  AACCTTGT-AAAAGGATACAAATATAACAATATGGAGTTTTCCCATCTCA  143

seq1  TCCCCTGATCTTATTTTGCTTAGGGCTACTCTAATATCTGCTA-TTTTCT  195
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCCCTGATCTTATTTTGCTTAGGGCTACTCTAATATCTGCTATTTTTCT  193

seq1  TTCTTAATTTAACTTAGCTTGTTCTTCATAATTGTATAACACCATTTAAA  245
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTC-TAATTTAACTTAGCTTGTTCTTCATAATTGTATAACACCA-TTAAA  241

seq1  GTACATCTTTTAATCTTATATCCTGTGCTGTCTGTCATCCGGCATATGGT  295
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTACATCTTTTAATC-TATATCCTGTGCTGTCTGTCATCCGGCATATGGT  290

seq1  CCTGAGCTCTCCAAAATGATATTCATGGCAACTGGAATAGGAGACTTCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCTCCAAAATGATATTCATGGCAACTGGAATAGGAGACTTCTT  340

seq1  ATAAGCACTTACTGAAATCATTTTGGAAGTACTAACATACATATTTAGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACTTACTGAAATCATTTTGGAAGTACTAACATACATATTTAGCA  390

seq1  TAATATTTTGATATCCTTCCAACTTATGATATTTAGAAAACCAGGCAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTGATATCCTTCCAACTTATGATATTTAGAAAACCAGGCAAGA  440

seq1  TACTCATTGCATGTAAACTTGTGTTGGTATTTAGTGCCCCAAAGCAAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTGCATGTAAACTTGTGTTGGTATTTAGTGCCCCAAAGCAAACC  490

seq1  ATAAATAATGCTATTTCCTTAAAAGCATTGAATGGAACTCTTTGTTATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATGCTATTTCCTTAAAAGCATTGAATGGAACTCTTTGTTATAT  540

seq1  AAACTTGAAAACACTGAACATATTAAACATCCTGTTTAATAGCTAAAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAAAACACTGAACATATTAAACATCCTGTTTAATAGCTAAAAGT  590

seq1  CTTTTTCTTTCTGTCTATGGTGAGACAATTTTGGAGTTTCATTTCACTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTCTGTCTATGGTGAGACAATTTTGGAGTTTCATTTCACTTA  640

seq1  ATCATACATACATCTATAGTGTATATATGCTTTACATTCACACATGCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACATACATCTATAGTGTATATATGCTTTACATTCACACATGCCTA  690

seq1  CCATTTTGTGGTAATTTAGCTGGGGAAAGTTTCACCTCAGAAAACAGAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTGGTAATTTAGCTGGGGAAAGTTTCACCTCAGAAAACAGAAA  740

seq1  GTAAACAAAAGTATCAATTGCCAGTAAGATTGATAAAACAAGAAACTTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAAGTATCAATTGCCAGTAAGATTGATAAAACAAGAAACTTGA  790

seq1  GTGTTTGAGCACATAGGGGTAAGTGGATCTTTCTGGAATTGTTACCTCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGCACATAGGGGTAAGTGGATCTTTCTGGAATTGTTACCTCAG  840

seq1  CATGTATAGAGGGCCAATGGTCCACATTTGCCTTAGGGGTCCTTATATTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATAGAGGGCCAATGGTCCACATTTGCCTTAGGGGTCCTTATATTG  890

seq1  CATATTTTAGTTACAAATAATAGTTAATGTTTTGAAACTTCCAGATTATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAGTTACAAATAATAGTTAATGTTTTGAAACTTCCAGATTATT  940

seq1  GACTAAAATGAGAAAAAAGTCCTGGATAAAGGAAGCTAGAATAAGAAAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAATGAGAAAAAAGTCCTGGATAAAGGAAGCTAGAATAAGAAAAC  990

seq1  TGAAATGAATTTAAATCTCTTGGCCTTCAAATGAAAAAAAGGTTGCCGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAATTTAAATCTCTTGGCCTTCAAATGAAAAAAAGGTTGCCGTG  1040

seq1  TCTGAATATACATGTGGTTTTGTGTTGGAACTTTTGGGATAGCATTGGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATACATGTGGTTTTGTGTTGGAACTTTTGGGATAGCATTGGAA  1090

seq1  ATGTAAACAAGGAAAATACCTAATTAAAAAAAATTAAAAGGTCATAAAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACAAGGAAAATACCTAATTAAAAAAAATTAAAAGGTCATAAAAA  1140

seq1  ACACTGGAAGAATTC  1160
      |||||||||||||||
seq2  ACACTGGAAGAATTC  1155

seq1: chr16_64853554_64854580
seq2: B6Ng01-286O19.g_70_1109

seq1  GAATTCTTCAGAACATACTTGAAGTATTTCTTCAACATGTTTTTAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAACATACTTGAAGTATTTCTTCAACATGTTTTTAACAAA  50

seq1  ATTATTCAGTATAGTAGTATCTGATGTCTTGATTATTATAAAAAGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAGTATAGTAGTATCTGATGTCTTGATTATTATAAAAAGTTAAA  100

seq1  TCACAGGCATAGAAGAGTAAGTCTTGCTAATCTTTTGTTATCAAAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCATAGAAGAGTAAGTCTTGCTAATCTTTTGTTATCAAAGTATA  150

seq1  TTTATTATCTTGGGTTTCCAGTGCTTGTAATTTTATATAGCTGATAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATCTTGGGTTTCCAGTGCTTGTAATTTTATATAGCTGATAGTCC  200

seq1  GTTGATAATTTTCAGAAGTTTGGGGGCCTAGTGAAGTGACTTTGAGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAATTTTCAGAAGTTTGGGGGCCTAGTGAAGTGACTTTGAGAGTC  250

seq1  ACTAACAACACTGAGTTAGTCCATGAAACCACTGTCCTCAGCTCCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAACACTGAGTTAGTCCATGAAACCACTGTCCTCAGCTCCAAACA  300

seq1  TGTGCCAGAACACAGGTGCTCACACATTTAGACTTCTGTAAGAAGTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGAACACAGGTGCTCACACATTTAGACTTCTGTAAGAAGTAAGA  350

seq1  CACGGCCAGGTATGCTGGCACATGTCTGTGATGTGATCCCTGCCATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCAGGTATGCTGGCACATGTCTGTGATGTGATCCCTGCCATTCAG  400

seq1  GACAACATTGAAAGCCCGCTGGACAACAGGGTTGTTCTTGGTGTTTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATTGAAAGCCCGCTGGACAACAGGGTTGTTCTTGGTGTTTTGAG  450

seq1  TTTTGTTGTTAGGCTAAATTTAGTGTTAAACTGCTTCTAAATTATATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTAGGCTAAATTTAGTGTTAAACTGCTTCTAAATTATATGGG  500

seq1  TTTTGATAAATGGTTATGGGGGGGTCGTTATTTGAATTTGGCTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAAATGGTTATGGGGGGGTCGTTATTTGAATTTGGCTTTTTTTT  550

seq1  TTTCCTGTTTGTTTCATTTTTGTTTTTGTTTTTGATTGCTGAGGTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTTTGTTTCATTTTTGTTTTTGTTTTTGATTGCTGAGGTCAAAC  600

seq1  CTAGAATTTAGCTCATGCTAAGCAGTTGTTCTGCCTCTAGTGGACACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTAGCTCATGCTAAGCAGTTGTTCTGCCTCTAGTGGACACCCA  650

seq1  GCTGTTCATTTACTTTTTATAAACATCAAGTTGTGCCCAGCACATATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCATTTACTTTTTATAAACATCAAGTTGTGCCCAGCACATATTGG  700

seq1  GCACTATGTTAAGGGAAATAAAAATTAGTCTTCAATGGAAATTGGAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGTTAAGGGAAATAAAAATTAGTCTTCAATGGAAATTGGAAACC  750

seq1  AAATGTTAAAGAACATATTGCCTTCTCTTGATTATCAACTTTTTAGAG-A  799
       |||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  -AATGTTAAAGAACATATTGCCTTCTCTTGATTATCAAC-TTTTAGAGAA  798

seq1  AATACA-TATGTTAATATTTTTCCAG-ACATGGTGTCAT-ACAGTTTCAG  846
      |||||| ||||||||||||||||||| |||||||||||| ||||||||||
seq2  AATACATTATGTTAATATTTTTCCAGAACATGGTGTCATAACAGTTTCAG  848

seq1  CCTCAGAATTCAGGAGGTGAC-AAAGATAGGTCTCTGTCTACATAG-TGA  894
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CCTCAGAATTCAGGAGGTGACAAAAGATAGGTCTCTGTCTACATAGTTGA  898

seq1  GAC-TCTGTCTTTGTTTTTGGTTAGC-TGGTTTTCTAGACTGG-ATTTCT  941
      ||| |||||||||||||||||||||| |||||||||||||||| ||||||
seq2  GACTTCTGTCTTTGTTTTTGGTTAGCTTGGTTTTCTAGACTGGAATTTCT  948

seq1  CTGT-GTAACCCTGGCTGTCCTGGAACTCA-CTTCATAGAA--CAGGCCT  987
      |||| ||||||||||||||||||||||||| ||||||| ||  |||||||
seq2  CTGTGGTAACCCTGGCTGTCCTGGAACTCACCTTCATAAAAACCAGGCCT  998

seq1  GCCTCTG-CCTTCCCAAGTGCTGGGATTAAAGG-CATGTACC  1027
      ||||||| ||||||||||||||||||||||||| ||||||||
seq2  GCCTCTGCCCTTCCCAAGTGCTGGGATTAAAGGCCATGTACC  1040