BAC Information

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BAC

Clone NameB6Ng01-286P17
Chromosome16 (Build37)
Map Location 80,977,910 - 80,979,011
singlet/doubletsinglet
Overlap genenone
Upstream gene1700066C05Rik, LOC621365, LOC100039724
Downstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286P17.bB6Ng01-286P17.g
ACCGA085033GA085034
length1,1821,100
definitionB6Ng01-286P17.b B6Ng01-286P17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaatgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcggcacgcaataagtggtgccgaaacccgggaa
ctgtcatcacaccggcgcaaggaagatccctcgttcgcagggcagaatca
gaaccgtgggacaaaaggctctacaaggtacgtacaatcttgaaatttct
ccagagttagaagcccttttgattgtttgcactgagattatgaggattgt
cagcaaatggtagaagcggggcagaaagttctggacgaaattcaagaaag
tctatcagaggtagagcggggagagaaagtaaaagtagagaggaaacaaa
gtgcactgaagaatttaggcctttccacgggccttgagcccgaggaaaag
agatataaaggaaagaatgccttgggagagataagaaaaagggatggaaa
gggagagaagaagggagatcgagctggagaggcacataaggaaaggagcc
tctacccgccactggatgaatttaagcagctagctcttagtagctcagaa
ccagatgaaggagttagtgcctctgaagaaacggactcggaggaggaagc
agttccttataagggaaaaaggtaccagcaagataaaatgtaagctactc
agtccagaaaaaggccaaaagcggctggcgaaagccagcttgctgctcgg
cctccggactgtcggcttcagggtcctagtgcacctccgctttatgtgca
gaggtagtggtcaatttttacctactcctcatgtaaggggtaaacccttg
tgggcgtcaggccattacaggtctggcaatgggatgtcactcatatttcc
tcctttgggagagtcatatttacatgttttctatgacacctgctctggtg
taatgtttgccacaccttttacaggtgaaaagcccttcatgtaatacagg
cactgcttagagcggtgggatggctggccaaggtccccaatctaaattga
taatgggaccagccaaatatatacttcttatc
gaattcaaatattataatagccaatcatttcaagaacatattggcttaaa
tttacactattatttttaattttcagatgtaatgaaaatgcatgaccacc
cctatatttattgaaaaataaatgtaagtttcttagctcattttatttta
aattatctgcctgtatagctatactgattatctgattatattttcaaccc
ccaccccaccgaaacaggtacagttactgtgcatttacattaagggtaga
aaatataaagaaggcaggtgaagaagaaagtgttaaaaaatggccttgga
atgtatgagaagagatatgagaaaattatacttaccacaaaagcacatgg
tttgaccttcttagcgctgcattgctcctctaccccaactatccagctag
cagaataataagatcctgaggtactgaggaagattagcagcaaaaacaac
tattacaaacttagaatcgtgtcaccaccaaaatgttaatattaactagt
agtgatagttgatatgaaagacaatctctgatgatattaaaaatctaact
ttcattttgtcccctttctctttctgccaccatttcctctctgtctctgt
ctcgtctctgtctctgtctctgtctctgtctctgtctctctctctctctc
tctctctctctctctctctctctcctctctcttctccccctcctctcttt
ctttctccaccttgtctctcccaataaaacctcttccatgtggaactgtc
taaaaaaaaatttaccttttcatgataactaagtgtgcatggcacaaatt
ttcatctgggtgcatatgtgcaatcatataattccagcaattatggggcc
gagtttgcaggattgcaatcttttagttctaggtaactttctatctttcc
atttgtagtttgcttgcttgcttgttttggaagtcatgatgcggtgttgg
tacataataaaccagaaattctgggctatttgggcttttaaatgatgcat
cataggttcgtatgtacttattctggatagctgattgctaggaagagcaa
gaactaagatcttatgcacagaaaagattcacatctgctgactcacagca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80977910_80979011
seq2: B6Ng01-286P17.g_68_1167

seq1  GAATTCAAATATTATAATAGCCAATCATTTCAAGAACATATTGGCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATATTATAATAGCCAATCATTTCAAGAACATATTGGCTTAAA  50

seq1  TTTACACTATTATTTTTAATTTTCAGATGTAATGAAAATGCATGACCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTATTATTTTTAATTTTCAGATGTAATGAAAATGCATGACCACC  100

seq1  CCTATATTTATTGAAAAATAAATGTAAGTTTCTTAGCTCATTTTATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTTATTGAAAAATAAATGTAAGTTTCTTAGCTCATTTTATTTTA  150

seq1  AATTATCTGCCTGTATAGCTATACTGATTATCTGATTATATTTTCAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTGCCTGTATAGCTATACTGATTATCTGATTATATTTTCAACCC  200

seq1  CCACCCCACCGAAACAGGTACAGTTACTGTGCATTTACATTAAGGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCGAAACAGGTACAGTTACTGTGCATTTACATTAAGGGTAGA  250

seq1  AAATATAAAGAAGGCAGGTGAAGAAGAAAGTGTTAAAAAATGGCCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGAAGGCAGGTGAAGAAGAAAGTGTTAAAAAATGGCCTTGGA  300

seq1  ATGTATGAGAAGAGATATGAGAAAATTATACTTACCACAAAAGCACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAGAAGAGATATGAGAAAATTATACTTACCACAAAAGCACATGG  350

seq1  TTTGACCTTCTTAGCGCTGCATTGCTCCTCTACCCCAACTATCCAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTTCTTAGCGCTGCATTGCTCCTCTACCCCAACTATCCAGCTAG  400

seq1  CAGAATAATAAGATCCTGAGGTACTGAGGAAGATTAGCAGCAAAAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAATAAGATCCTGAGGTACTGAGGAAGATTAGCAGCAAAAACAAC  450

seq1  TATTACAAACTTAGAATCGTGTCACCACCAAAATGTTAATATTAACTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAACTTAGAATCGTGTCACCACCAAAATGTTAATATTAACTAGT  500

seq1  AGTGATAGTTGATATGAAAGACAATCTCTGATGATATTAAAAATCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGTTGATATGAAAGACAATCTCTGATGATATTAAAAATCTAACT  550

seq1  TTCATTTTGTCCCCTTTCTCTTTCTGCCACCATTTCCTCTCTGTCTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGTCCCCTTTCTCTTTCTGCCACCATTTCCTCTCTGTCTCTGT  600

seq1  CTCGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTTCTCCCCCTCCTCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTTCTCCCCCTCCTCTCTTT  700

seq1  CTTTCTCCACCTTGTCTCTCCCAATAAAACCTCTTCCATGTGGAACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCACCTTGTCTCTCCCAATAAAACCTCTTCCATGTGGAACTGTC  750

seq1  TAAAAAAAAATTTACC-TTTCATGATAACTAAGTGTGCATGGCACAAA-T  798
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  TAAAAAAAAATTTACCTTTTCATGATAACTAAGTGTGCATGGCACAAATT  800

seq1  TTCATCTGGGTGCATATGTGCAATCATATAATTCCAGCAATTATGGGGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGGGTGCATATGTGCAATCATATAATTCCAGCAATTATGGGGCC  850

seq1  GAG-TTGCAGGATTGCAATCTTTTAGTTCTAGGTAACTTTCTATCTTTCC  897
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCAGGATTGCAATCTTTTAGTTCTAGGTAACTTTCTATCTTTCC  900

seq1  ATTTGTTAGTTTGCTTGCTTGCTTGTTTTTGGAAGTCATGATGCGGTGTT  947
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTG-TAGTTTGCTTGCTTGCTTG-TTTTGGAAGTCATGATGCGGTGTT  948

seq1  GGTACAT-ATAAACCAGAAATTCT-GGCTATTTGGGCTTTTAAAATGATG  995
      ||||||| |||||||||||||||| |||||||||||||||| ||||||||
seq2  GGTACATAATAAACCAGAAATTCTGGGCTATTTGGGCTTTT-AAATGATG  997

seq1  CATCATAGGTTAAATAATGTAACTTATTTCTGGATAGCTGATATGCCTAG  1045
      |||||||||||     |||| ||||| ||||||||||||||| || ||||
seq2  CATCATAGGTT--CGTATGT-ACTTA-TTCTGGATAGCTGAT-TG-CTAG  1041

seq1  GAAGAGC-AGAACCAAGGATC-TATGCACAG-AAAGA-TCACATCTGCTG  1091
      ||||||| ||||| || |||| ||||||||| ||||| ||||||||||||
seq2  GAAGAGCAAGAACTAA-GATCTTATGCACAGAAAAGATTCACATCTGCTG  1090

seq1  ACTCACCAGCA  1102
      ||||| |||||
seq2  ACTCA-CAGCA  1100