BAC Information

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BAC

Clone NameB6Ng01-290H22
Chromosome16 (Build37)
Map Location 17,923,139 - 18,065,741
singlet/doubletdoublet
Overlap geneSlc25a1, Vpreb2, Dgcr6
Upstream genePpm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl
Downstream geneProdh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290H22.bB6Ng01-290H22.g
ACCGA087624GA087625
length1,091996
definitionB6Ng01-290H22.b B6Ng01-290H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,923,139 - 17,924,231)(18,065,201 - 18,065,741)
sequence
gaattcttttatttgcctaaaatgagacagtcactgggctggggcacggc
tcagatatgcaagcttggactctgaatttcttgattctctacttaaagtt
tggggttttttttagaatgcaggaaacaagcatttttcaactattaaagt
gtgatttctttggatattaaactatgatttgccattttatcacctgcaca
ggggcatacatagaaaatctcagggtgtacctatacagctgtaagaggag
ctccacagaatttagaatgggtcacaaaatatcagcttgcggtcctgctc
tgtccctctgtgggcttgtctaagccctgtcctcactctgaggctattgt
tcctcctggcacagttctatgaggagtgtgtgccgcagatctgcaaactt
aagtcacctcctggaattcttccctgtataagctctgtctgtctccaggg
ttttaagaagaggtaaagtcccattctgtaagttgggtttgttctgcata
gcatcttgatcaaagacccacatcacatatctctgccttcactgctatcc
agagaggcagtggtcaccagcctagaggcctgatcagatccccagaccaa
gaggatctggggacagtcaagggcaatcatacatagctatggctcttcct
atgaatcatgggcctctttgtaagtacagtgactgatggtatcactgtga
ccatagatggaactcctcttgggcagttgctgggcttttcatgtctcagt
agcatcaagcacctggggaaactgcaaggcacttcctgcaactcaagaaa
agcaaccctcagtgaggttgccagatgctatgttcctccctacaggagtc
aggtcatttcagctatgcagcctagtggtgtgtattcttttaaccctatt
tctcagattagggagttgaggttaggtaacttgcccaaggttatacagaa
aatgtgggagggagggggaagagcatgactctcatccatcttcttcagat
gcttcttgggagcagactcagaaagcctagttgccactttaccaccttcg
ccaagtgagtttgagagtgtcgggcctgttagcagggcagc
gaattcagatctgggtaacataaattacagtgaagaaaccttgtgaagtt
tgaatgcaaatgaccccatagcctcagatatttggaaacttggtccccag
ttggtggaattactaaggaaggattaggaggtgtggctttattggagaaa
gagtgtcactgagggctggttttgagattttaaaacatacaccatccata
cattctctgtctgtctgtctgtctctgtatgtctgtctctgtatgtctct
ctacctctgtctctgtgtctctctttgtctctctctctctctgtgtctct
gtctgtctctttctgactctctgtctctctgtgtgagtgtgtctgtctgt
ctgtctgtctgtctgtctgtctctttctcttgtctcatcactaccagcac
cacctcatgcttttgaattaagatataagctatcagctacttccccaggg
ccatacctgcctacctggctggtgccatgctctctaccatggtggtcctg
gagtcaccttctgaagctgtaagacccccaacaaacccttctgtaagttg
ccttgttcatggtgtcctcgcagcaatagaaaagcctctgaaacacctgt
gcatggagaaataatttgcatgaataaatatactccaaagtaactgtaat
ttaatgttgacagtataccaaattatggtgaatcatttaaatcagacatt
taaaagtcacgatctgcagctggggatgtagcttagttggtagagcgttg
cctagcattcaagatgcagtggggttctatgtgcagtatcacagaaacca
ggcatggtggcgcatgtctgtgattccagtactcaggaattgtaggcatg
gtcggatgcgcaggggcatctttgggctacatagtgagttccaggctggc
ctgagatgcagtagaccctggctccaaagaaagtcatttattgttcacat
actcaactctggatatggagtgtgagcaatccttggacatcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_17923139_17924231
seq2: B6Ng01-290H22.b_49_1139

seq1  GAATTCTTTTATTTGCCTAAAATGAGACAGTCACTGGGCTGGGGCACGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATTTGCCTAAAATGAGACAGTCACTGGGCTGGGGCACGGC  50

seq1  TCAGATATGCAAGCTTGGACTCTGAATTTCTTGATTCTCTACTTAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATGCAAGCTTGGACTCTGAATTTCTTGATTCTCTACTTAAAGTT  100

seq1  TGGGGTTTTTTTTAGAATGCAGGAAACAAGCATTTTTCAACTATTAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTTTTTTAGAATGCAGGAAACAAGCATTTTTCAACTATTAAAGT  150

seq1  GTGATTTCTTTGGATATTAAACTATGATTTGCCATTTTATCACCTGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTCTTTGGATATTAAACTATGATTTGCCATTTTATCACCTGCACA  200

seq1  GGGGCATACATAGAAAATCTCAGGGTGTACCTATACAGCTGTAAGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATACATAGAAAATCTCAGGGTGTACCTATACAGCTGTAAGAGGAG  250

seq1  CTCCACAGAATTTAGAATGGGTCACAAAATATCAGCTTGCGGTCCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGAATTTAGAATGGGTCACAAAATATCAGCTTGCGGTCCTGCTC  300

seq1  TGTCCCTCTGTGGGCTTGTCTAAGCCCTGTCCTCACTCTGAGGCTATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCTGTGGGCTTGTCTAAGCCCTGTCCTCACTCTGAGGCTATTGT  350

seq1  TCCTCCTGGCACAGTTCTATGAGGAGTGTGTGCCGCAGATCTGCAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGGCACAGTTCTATGAGGAGTGTGTGCCGCAGATCTGCAAACTT  400

seq1  AAGTCACCTCCTGGAATTCTTCCCTGTATAAGCTCTGTCTGTCTCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACCTCCTGGAATTCTTCCCTGTATAAGCTCTGTCTGTCTCCAGGG  450

seq1  TTTTAAGAAGAGGTAAAGTCCCATTCTGTAAGTTGGGTTTGTTCTGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAAGAGGTAAAGTCCCATTCTGTAAGTTGGGTTTGTTCTGCATA  500

seq1  GCATCTTGATCAAAGACCCACATCACATATCTCTGCCTTCACTGCTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTGATCAAAGACCCACATCACATATCTCTGCCTTCACTGCTATCC  550

seq1  AGAGAGGCAGTGGTCACCAGCCTAGAGGCCTGATCAGATCCCCAGACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCAGTGGTCACCAGCCTAGAGGCCTGATCAGATCCCCAGACCAA  600

seq1  GAGGATCTGGGGACAGTCAAGGGCAATCATACATAGCTATGGCTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTGGGGACAGTCAAGGGCAATCATACATAGCTATGGCTCTTCCT  650

seq1  ATGAATCATGGGCCTCTTTGTAAGTACAGTGACTGATGGTATCACTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCATGGGCCTCTTTGTAAGTACAGTGACTGATGGTATCACTGTGA  700

seq1  CCATAGATGGAACTCCTCTTGGGCAGTTGCTGGGCTTTTCATGTCTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATGGAACTCCTCTTGGGCAGTTGCTGGGCTTTTCATGTCTCAGT  750

seq1  AGCATCAAGCACCTGGGGAAACTGCAAGGCACTTCCTGCAACTCAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAGCACCTGGGGAAACTGCAAGGCACTTCCTGCAACTCAAGAAA  800

seq1  AGCAACCCTCAGTGAGGTTGCCAGATGCTATGTTCCTCCCTACAGGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCTCAGTGAGGTTGCCAGATGCTATGTTCCTCCCTACAGGAGTC  850

seq1  AGGTCATTTCAGCTATGCAGCCTAGTGGTGTGTATTCTTTTAACCCTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTTCAGCTATGCAGCCTAGTGGTGTGTATTCTTTTAACCCTATT  900

seq1  TCTCAGATTAGGGAGTTGAGGTTAGGTAACTTGCCCAAGGTTATACAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATTAGGGAGTTGAGGTTAGGTAACTTGCCCAAGGTTATACAGAA  950

seq1  AATGTGGGAGGGA-GGGGAAGAGCATGACTCTCATCCATCTTC-TCAGAT  998
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  AATGTGGGAGGGAGGGGGAAGAGCATGACTCTCATCCATCTTCTTCAGAT  1000

seq1  GCTTCTTGGGAGCAGACCTCAGGAAAGCTAG-TGCCACTTTACCACCTCG  1047
      |||||||||||||||| ||||| ||  |||| ||||||||||||||||  
seq2  GCTTCTTGGGAGCAGA-CTCAGAAAGCCTAGTTGCCACTTTACCACCTTC  1049

seq1  GCCAAGGTGGAGTTTGAGAGTGTCGGGGCCTGGTAGCAGGGGCAGC  1093
      ||||||   ||||||||||||||| ||||||| ||||| |||||||
seq2  GCCAAG--TGAGTTTGAGAGTGTC-GGGCCTGTTAGCA-GGGCAGC  1091

seq1: chr16_18065201_18065741
seq2: B6Ng01-290H22.g_66_606 (reverse)

seq1  GAAGGGTTTGTTGGGGGTCTTACAGCTTCAGAAGGTGACTCCAGGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTGTTGGGGGTCTTACAGCTTCAGAAGGTGACTCCAGGACCAC  50

seq1  CATGGTAGAGAGCATGGCACCAGCCAGGTAGGCAGGTATGGCCCTGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGAGAGCATGGCACCAGCCAGGTAGGCAGGTATGGCCCTGGGGA  100

seq1  AGTAGCTGATAGCTTATATCTTAATTCAAAAGCATGAGGTGGTGCTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGATAGCTTATATCTTAATTCAAAAGCATGAGGTGGTGCTGGTA  150

seq1  GTGATGAGACAAGAGAAAGAGACAGACAGACAGACAGACAGACAGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGACAAGAGAAAGAGACAGACAGACAGACAGACAGACAGACAGA  200

seq1  CACACTCACACAGAGAGACAGAGAGTCAGAAAGAGACAGACAGAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACACAGAGAGACAGAGAGTCAGAAAGAGACAGACAGAGACACA  250

seq1  GAGAGAGAGAGAGACAAAGAGAGACACAGAGACAGAGGTAGAGAGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGACAAAGAGAGACACAGAGACAGAGGTAGAGAGACATA  300

seq1  CAGAGACAGACATACAGAGACAGACAGACAGACAGAGAATGTATGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGACATACAGAGACAGACAGACAGACAGAGAATGTATGGATGG  350

seq1  TGTATGTTTTAAAATCTCAAAACCAGCCCTCAGTGACACTCTTTCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTTAAAATCTCAAAACCAGCCCTCAGTGACACTCTTTCTCCAA  400

seq1  TAAAGCCACACCTCCTAATCCTTCCTTAGTAATTCCACCAACTGGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCACACCTCCTAATCCTTCCTTAGTAATTCCACCAACTGGGGACC  450

seq1  AAGTTTCCAAATATCTGAGGCTATGGGGTCATTTGCATTCAAACTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCAAATATCTGAGGCTATGGGGTCATTTGCATTCAAACTTCACA  500

seq1  AGGTTTCTTCACTGTAATTTATGTTACCCAGATCTGAATTC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTTCACTGTAATTTATGTTACCCAGATCTGAATTC  541