BAC Information

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BAC

Clone NameB6Ng01-292M08
Chromosome16 (Build37)
Map Location 26,046,111 - 26,047,210
singlet/doubletsinglet
Overlap geneLeprel1
Upstream gene5430420C16Rik, Trp63, LOC100043571
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M08.bB6Ng01-292M08.g
ACCGA089322GA089323
length7341,098
definitionB6Ng01-292M08.b B6Ng01-292M08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcctaggcaaatggatggacctggagggcaccatcct
gagtgaggtaacccaatcacaaaagaactcacatgacatgtactcaaaac
tcacatgatatgtactcactgataagtggatattagcccagaaacttaga
atacccaagatataagatacaattttcaaaacacatgaaactcaagaaga
atgaagaccaaggtatggatactttgcctcttcctagaattgggaacaaa
acacccatggaaggagttacagagacaaagtttggagctgagacaaaagg
atggaccatctagagactgccatacccagggatccatcccataatcagcc
tccaaatgctgataccattgcacacactagcaagattttgctgaaaggat
ttgatatagctgtctattgtgaggctatgttggggcctagcaaacacaga
agtggatgctcacagtcagctattggatgaatcatagtgcccccaatgga
ggagctagagaaagtacccaaggagctaaaggggtctacaaccctatagg
tggaacaacactatgaactaaccagtacccctggagctcatgtctctagc
tccatatgtatcaaaagatggcctagtcagccatcagtggaaagagaggc
ccattggtcttgcaaactttatatgcctcagtatagaggaacgccagggc
caagaaatgggagtggttgggtaggggaatgggg

gaattcccctcatattgtttttaaagattgctactacccattaaaaatag
aaatcagaaaagccaataaaattggaccctattttgattatgcgttccct
cggcatgcacccaataatctctgacttccttggaaagtgtatgatcatct
tcggaacctcaattacagctgtccctctttctggagatgtaatcactaga
caccttaaatgttgagtgtggggcttgcttgtattcattaaaaccagaga
aaggggggaatggtggtccccatttggcaaacattcatttcccaagattg
catttgtgtttttgtttatcataaaatgttcttaaacagagctgaaatgg
tttgtgattatgcctgtgatttacacaaaagaatgtacaagtgtggattg
ctctcttcatacagcgtgtccgtcctcaagtaaacaaaatgtgatcccag
ttgaagactctggcatacaaaggtcaatttgggaaattcgtagagaaaat
aaaaaaataaataaaataaagaggctattgagcataggcctgctcacggc
attgttattggaaacccatacatgcatgattaaagttcattcatgagcac
agaggtcagggttaaacagcactgggtctgctggggaaagtgggtgagtt
tcatgacagactgggactctccctagagaacaaataagaatgcagtcact
ttaggcactgaagagtgagggcctgagcaggcctagtagtacagtagcag
attttcctctcattgcaaaataagttttacaaaactgcgtgtttattttg
atactgttattttaaggatgatatagaaaaatccaggtttgttattatta
ttattaaaacagagaagaggttggcaaggtgatttatagcagtgtgggat
aagggcttcttttaagtatactactcattgtttctatctgcagtactagg
tagactggaatacagggtttagtgcacgaatgtctctggacttaggagcc
agacaggtagattccatgtgattttgaaaagctggattagattattagag
tcacatgtagaaagcctttaagtggaggaatatcatgatccactgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26046111_26047210
seq2: B6Ng01-292M08.g_68_1165 (reverse)

seq1  ACCCAGTGATCCATGATATTCCT-CACTTAAA-GCTTTCTTACATGTGAC  48
      ||||||||   |||||||||||| |||||||| |||||| ||||||||||
seq2  ACCCAGTGGATCATGATATTCCTCCACTTAAAGGCTTTC-TACATGTGAC  49

seq1  TCCTATTATTCTAAATCCAGCTTTTCAAAATCCACATGGAATCTACCTGT  98
      | ||| || ||| |||||||||||||||||| ||||||||||||||||||
seq2  T-CTAATAATCT-AATCCAGCTTTTCAAAAT-CACATGGAATCTACCTGT  96

seq1  CTGGCCTCCTAAGTCCAGAGACATTCGTGCACT-AACCCTGTATTCCCAG  147
      |||| |||||||||||||||||||||||||||| ||||||||||| ||||
seq2  CTGG-CTCCTAAGTCCAGAGACATTCGTGCACTAAACCCTGTATT-CCAG  144

seq1  TCTACCTAGTACTGCAGATAGAAACAATGAGTAGTATACTTAAAAGAAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTAGTACTGCAGATAGAAACAATGAGTAGTATACTTAAAAGAAGC  194

seq1  CCTTAT-CCACACTGCTATAAATCACCTTGCCAACCTCTTCTCTGTTTTA  246
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCCCACACTGCTATAAATCACCTTGCCAACCTCTTCTCTGTTTTA  244

seq1  ATAATAATAATAACAAACCTGGATTTTTCTATATCATCCTTAAAATAACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAACAAACCTGGATTTTTCTATATCATCCTTAAAATAACA  294

seq1  GTATCAAAATAAACACGCAGTTTTGTAAAACTTATTTTGCAATGAGAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAATAAACACGCAGTTTTGTAAAACTTATTTTGCAATGAGAGGA  344

seq1  AAATCTGCTACTGTACTACTAGGCCTGCTCAGGCCCTCACTCTTCAGTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCTACTGTACTACTAGGCCTGCTCAGGCCCTCACTCTTCAGTGC  394

seq1  CTAAAGTGACTGCATTCTTATTTGTTCTCTAGGGAGAGTCCCAGTCTGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTGACTGCATTCTTATTTGTTCTCTAGGGAGAGTCCCAGTCTGTC  444

seq1  ATGAAACTCACCCACTTTCCCCAGCAGACCCAGTGCTGTTTAACCCTGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCACCCACTTTCCCCAGCAGACCCAGTGCTGTTTAACCCTGAC  494

seq1  CTCTGTGCTCATGAATGAACTTTAATCATGCATGTATGGGTTTCCAATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTCATGAATGAACTTTAATCATGCATGTATGGGTTTCCAATAA  544

seq1  CAATGCCGTGAGCAGGCCTATGCTCAATAGCCTCTTTATTTTATTTATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCGTGAGCAGGCCTATGCTCAATAGCCTCTTTATTTTATTTATTT  594

seq1  TTTTATTTTCTCTACGAATTTCCCAAATTGACCTTTGTATGCCAGAGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCTCTACGAATTTCCCAAATTGACCTTTGTATGCCAGAGTCT  644

seq1  TCAACTGGGATCACATTTTGTTTACTTGAGGACGGACACGCTGTATGAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGGATCACATTTTGTTTACTTGAGGACGGACACGCTGTATGAAG  694

seq1  AGAGCAATCCACACTTGTACATTCTTTTGTGTAAATCACAGGCATAATCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATCCACACTTGTACATTCTTTTGTGTAAATCACAGGCATAATCA  744

seq1  CAAACCATTTCAGCTCTGTTTAAGAACATTTTATGATAAACAAAAACACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATTTCAGCTCTGTTTAAGAACATTTTATGATAAACAAAAACACA  794

seq1  AATGCAATCTTGGGAAATGAATGTTTGCCAAATGGGGACCACCATTCCCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATCTTGGGAAATGAATGTTTGCCAAATGGGGACCACCATTCCCC  844

seq1  CCTTTCTCTGGTTTTAATGAATACAAGCAAGCCCCACACTCAACATTTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTGGTTTTAATGAATACAAGCAAGCCCCACACTCAACATTTAA  894

seq1  GGTGTCTAGTGATTACATCTCCAGAAAGAGGGACAGCTGTAATTGAGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTAGTGATTACATCTCCAGAAAGAGGGACAGCTGTAATTGAGGTT  944

seq1  CCGAAGATGATCATACACTTTCCAAGGAAGTCAGAGATTATTGGGTGCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGATGATCATACACTTTCCAAGGAAGTCAGAGATTATTGGGTGCAT  994

seq1  GCCGAGGGAACGCATAATCAAAATAGGGTCCAATTTTATTGGCTTTTCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGGAACGCATAATCAAAATAGGGTCCAATTTTATTGGCTTTTCTG  1044

seq1  ATTTCTATTTTTAATGGGTAGTAGCAATCTTTAAAAACAATATGAGGGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTTTTAATGGGTAGTAGCAATCTTTAAAAACAATATGAGGGGA  1094

seq1  ATTC  1100
      ||||
seq2  ATTC  1098


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