BAC Information

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BAC

Clone NameB6Ng01-293P17
Chromosome16 (Build37)
Map Location 16,139,562 - 16,140,688
singlet/doubletsinglet
Overlap gene2310008H04Rik
Upstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, LOC100043266
Downstream geneLOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293P17.bB6Ng01-293P17.g
ACCGA090229GA090230
length1,1091,173
definitionB6Ng01-293P17.b B6Ng01-293P17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttaataattttatcaagttagtgtttccttcctttgtctctg
tagaatctatgcatactaaggatgctgttaggtatgaaattattgagcat
actattttatataacgaatagtattatgaaatatgtgtatactcagactc
tcttgtcagtccagttaatttttgtatatgttgtaaattataaaggagtg
gttttataaactaaaaatagtgtggttgaaggtagtgataagtggtagtc
atatatatgagaaggcattgacattgactattatataaaatgtttcagca
gttcagcttagagtcttgaaaaatatgaaaacaaatttgtgtgtctctaa
ggactacatgttttgggaaatactcacttggtgaatattaaaaaaatgca
gaggactatatcaaggagagtataatttaatactgaatattttacaaaat
attattagtgatatttagcctttccacatgagtcatataagttaaattat
ttttattattattttgcctgcagtcattagcaagtgaaaagacaggtatt
actgaaaagcacctggaattatctccaaaaccaaagacaggtaacaatgt
tttgttttaactctttctttctttctttctttctttctttctttctttct
ttaacctctcattttggagatcaaaactttggagtccttagacttgtatg
cacctcactaaattcccaaaatctaaaatgttgatttattgacagtgacc
ttaaggctatttttcagtgatttttttttttttaaatcttttaaaaatgt
cacagtttggatagtttgcatattcagggttaaaatcaatgaaggtaaaa
ggtatttctgattcatctcaatcacaatctacccagttctttcctgggtc
ctgttggtgactacttacattttgggtactcctttactgggtttactttt
ttaaaataatttttaattatttctttcatatatatatcccgaccatagtt
tccttctctcttctctgttctcccctatccaatgcattctctctatttct
ccagaaaagttcaggcttccaagatatcacaacatggcatttagtaccat
atactagct
gaattctcacctgaggaatactgaatggctgggaagcacctgaaaaaatg
ttcagcatccttcatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcatcgtacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agattctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggacactgcaatacctctcctgggc
atatatccagaagatgctccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacataatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggatctggagggcatcatcctgagtgaggtaacccaatcacaat
agaactcacataatatgtactcattgataagtagatattaacccagaaac
ttaggatacccaatatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggaa
acaaaacacccatggaaggagttacagagacacagtttggagctgagacg
aaaggatggaccatctagagactgccatatccgggtatccatcccataat
cagcctccaaatgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctgtctcttgtgaggctatgctggggcctagcaaa
cacagaagtggatgctcacagtcagctattgggatggatcacagggcctc
aatggagagctagaagaaagtaaccaaggagctaaaggatctgcacccta
taggtggaacataatatgaactacccagtaccccccagagctggtgtctc
tagctgcaatatgtaatcagaggatgggccctagtcggcaatcatggaaa
agagacatgggctgtgtgcactcatctactcagatccggacgccaggcca
gaagttggaaatgtggtgtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16139562_16140688
seq2: B6Ng01-293P17.b_48_1156 (reverse)

seq1  AGCTAGTATTATTGTAACTTAAAATGCCATGTTTGGTTGATATCCCTGGG  50
      |||||||| ||| || |||  ||||||||||||    ||||||  || ||
seq2  AGCTAGTA-TATGGT-ACT--AAATGCCATGTT---GTGATAT--CTTGG  41

seq1  AAGCCTGACCTTTTTCTGAAGGAAAATAGAGGAGGAATGCATTGGGATTA  100
      |||||||| | ||||||| ||  ||||||||   ||||||||| ||||  
seq2  AAGCCTGAAC-TTTTCTGGAG--AAATAGAG--AGAATGCATT-GGAT--  83

seq1  GGGGGAGAAACAGGAAGAAGAGAAGAAAGGAAACTATGGTCGGGATATAA  150
       |||||| |||||  ||||||||   |||||||||||||||||||||| |
seq2  AGGGGAG-AACAG--AGAAGAGA--GAAGGAAACTATGGTCGGGATAT-A  127

seq1  TATATGAAAGAATAAATTAAAAATTATTTTAAAAAAGTAAACCCAGTAA-  199
      ||||||||||||  ||||||||||||||||||||||||||||||||||| 
seq2  TATATGAAAGAAATAATTAAAAATTATTTTAAAAAAGTAAACCCAGTAAA  177

seq1  -GGGTACCCAAAATGTAAGTAGTCACCAACAGGA-CCAGG-AAGAACTGG  246
       | ||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  GGAGTACCCAAAATGTAAGTAGTCACCAACAGGACCCAGGAAAGAACTGG  227

seq1  GTAGATTGTGATTGAGATGAATCAGAAATACCTTTTACCTTCATTGATTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTGTGATTGAGATGAATCAGAAATACCTTTTACCTTCATTGATTT  277

seq1  TAACCCTGAATATGCAAACTATCCAAACTGTGACATTTTTAAAAGATTT-  345
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAACCCTGAATATGCAAACTATCCAAACTGTGACATTTTTAAAAGATTTA  327

seq1  AAAAAAAAAAAATCACTGAAAAATAGCCTTAAGGTCACTGTCAATAAATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAATCACTGAAAAATAGCCTTAAGGTCACTGTCAATAAATC  377

seq1  AACATTTTAGATTTTGGGAATTTAGTGAGGTGCATACAAGTCTAAGGACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTAGATTTTGGGAATTTAGTGAGGTGCATACAAGTCTAAGGACT  427

seq1  CCAAAGTTTTGATCTCCAAAATGAGAGGTTAAAGAAAGAAAGAAAGAAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTTGATCTCCAAAATGAGAGGTTAAAGAAAGAAAGAAAGAAAG  477

seq1  AAAGAAAGAAAGAAAGAAAGAGTTAAAACAAAACATTGTTACCTGTCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAGTTAAAACAAAACATTGTTACCTGTCTTT  527

seq1  GGTTTTGGAGATAATTCCAGGTGCTTTTCAGTAATACCTGTCTTTTCACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGAGATAATTCCAGGTGCTTTTCAGTAATACCTGTCTTTTCACT  577

seq1  TGCTAATGACTGCAGGCAAAATAATAATAAAAATAATTTAACTTATATGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGACTGCAGGCAAAATAATAATAAAAATAATTTAACTTATATGA  627

seq1  CTCATGTGGAAAGGCTAAATATCACTAATAATATTTTGTAAAATATTCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGGAAAGGCTAAATATCACTAATAATATTTTGTAAAATATTCAG  677

seq1  TATTAAATTATACTCTCCTTGATATAGTCCTCTGCATTTTTTTAATATTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTATACTCTCCTTGATATAGTCCTCTGCATTTTTTTAATATTC  727

seq1  ACCAAGTGAGTATTTCCCAAAACATGTAGTCCTTAGAGACACACAAATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGAGTATTTCCCAAAACATGTAGTCCTTAGAGACACACAAATTT  777

seq1  GTTTTCATATTTTTCAAGACTCTAAGCTGAACTGCTGAAACATTTTATAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATATTTTTCAAGACTCTAAGCTGAACTGCTGAAACATTTTATAT  827

seq1  AATAGTCAATGTCAATGCCTTCTCATATATATGACTACCACTTATCACTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAATGTCAATGCCTTCTCATATATATGACTACCACTTATCACTA  877

seq1  CCTTCAACCACACTATTTTTAGTTTATAAAACCACTCCTTTATAATTTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACCACACTATTTTTAGTTTATAAAACCACTCCTTTATAATTTAC  927

seq1  AACATATACAAAAATTAACTGGACTGACAAGAGAGTCTGAGTATACACAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACAAAAATTAACTGGACTGACAAGAGAGTCTGAGTATACACAT  977

seq1  ATTTCATAATACTATTCGTTATATAAAATAGTATGCTCAATAATTTCATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAATACTATTCGTTATATAAAATAGTATGCTCAATAATTTCATA  1027

seq1  CCTAACAGCATCCTTAGTATGCATAGATTCTACAGAGACAAAGGAAGGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGCATCCTTAGTATGCATAGATTCTACAGAGACAAAGGAAGGAA  1077

seq1  ACACTAACTTGATAAAATTATTAAAGGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  ACACTAACTTGATAAAATTATTAAAGGAATTC  1109