BAC Information

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BAC

Clone NameB6Ng01-295D24
Chromosome16 (Build37)
Map Location 80,565,659 - 80,687,575
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295D24.bB6Ng01-295D24.g
ACCGA091166GA091167
length1,101813
definitionB6Ng01-295D24.b B6Ng01-295D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,565,659 - 80,566,770)(80,686,764 - 80,687,575)
sequence
gaattctttattataatacaatgaagtttctaacactcacattcatataa
aagtaaatataacatacattgaaggggggttgtaaatgtgtttcactcaa
gcatgccccttctaacatgacacgtcttctcttcctatataaaagtctaa
caaaatatactttttgtgtatgaataactttccaaatagtccatataata
taataattatattaaaatacattattcttcacatttcatgtcagaagttt
accaaattcttggttctgttagttgttttgcttcatgagttgatgatcct
tttcaaattccattatatttaaatagccaaaacccatgcacagaccagga
aatcttaaacagtatttttgcgtggaaaaacctacacattcttttctatc
atccctgaatatgagtttcttcatcagtataaatctccgtctaatgatga
caaagttactactataacatccccttcatgattctggctgcatcttgaat
ttagagaggaaactgaggcatctgttgtattcacttcatcagcccctttc
caacttccctgagcagtgctttctcagttggtgtatcttttgcatgctgt
gtaatatttctttttttctaatttaatttttttacttatttatttattta
catttcaaatgttattccctttcccgatttcccactccagaaaccatcta
tcttgtcccccctcctcctgattctatgtatgagcatgtgccctcaccca
ctcattcactcccatctccctgccctcatattcccctactttagggcatc
aagccttcacaggaccaagggcctcttctcccattgatgcccaacaaaga
attctcaactgaggaaatttgaatggttgagaagcacctaaagaaatgat
caacatcattagggcgatgcaaagcaaaacaatcctgagattccacctca
aatgagtcagagtggctaagatcaaaactcagtgacagcagatactgtag
aggatgtggagaaagaggacactctccattgtggtgaattgcaagctgga
caccactctgggaataagtctggcagtctagaaaatggtaaatagtatta
c

gaattctacagagagattggaagatgaaaatgctgatggaaaagtgaatt
acaagctcagaaggtgtcagtaatcaactgtcgctcaggccacattgtag
cagaggttctgactatactttctctttctggaaaatttgagtatggctga
atcaaaaagtaaaagaataatgcatttcattgagaaaatttcaatatcat
gtagcactttgctgggatatggttcttctcagctgttctcacccaaatgt
tctgtcaaaatcacagtgagcaacaggaggaacatgagtcttagaccaat
gtgcatcttggtgagaaaggaaggttggacaattttaacttgtccacaac
gcatgggagaaagcaaaggcccaaattaagaactagtctaactcatttct
gaagtttctagcaacaccagttatgcacaatatttctttgagttttaaaa
atagttaataaatagattgtaaaatgggctttatatcacatctactttct
tgtaaacttttaaatataatctgtaaatttttctcatgtattcacattta
tttatattctatataccttctgatttcccaagattttgacagttgtgaag
tacaaaaaataagtgatggatttgaaaagaaaggaactaatcacattgtt
gtaaagcaataagggtagttttagatggccagactctcaactgttcatgg
atccatgaaacaaaagtccaaacttgatcttcattttacagacaaattta
tttgaaaaaaaagaaatgagagagagagagagagagagagagagaagggg
gggagaggaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80565659_80566770
seq2: B6Ng01-295D24.b_44_1144

seq1  GAATTCTTTATTATAATACAATGAAGTTTCTAACACTCACATTCATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTATAATACAATGAAGTTTCTAACACTCACATTCATATAA  50

seq1  AAGTAAATATAACATACATTGAAGGGGGGTTGTAAATGTGTTTCACTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATATAACATACATTGAAGGGGGGTTGTAAATGTGTTTCACTCAA  100

seq1  GCATGCCCCTTCTAACATGACACGTCTTCTCTTCCTATATAAAAGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCCTTCTAACATGACACGTCTTCTCTTCCTATATAAAAGTCTAA  150

seq1  CAAAATATACTTTTTGTGTATGAATAACTTTCCAAATAGTCCATATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATACTTTTTGTGTATGAATAACTTTCCAAATAGTCCATATAATA  200

seq1  TAATAATTATATTAAAATACATTATTCTTCACATTTCATGTCAGAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTATATTAAAATACATTATTCTTCACATTTCATGTCAGAAGTTT  250

seq1  ACCAAATTCTTGGTTCTGTTAGTTGTTTTGCTTCATGAGTTGATGATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTCTTGGTTCTGTTAGTTGTTTTGCTTCATGAGTTGATGATCCT  300

seq1  TTTCAAATTCCATTATATTTAAATAGCCAAAACCCATGCACAGACCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTCCATTATATTTAAATAGCCAAAACCCATGCACAGACCAGGA  350

seq1  AATCTTAAACAGTATTTTTGCGTGGAAAAACCTACACATTCTTTTCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAACAGTATTTTTGCGTGGAAAAACCTACACATTCTTTTCTATC  400

seq1  ATCCCTGAATATGAGTTTCTTCATCAGTATAAATCTCCGTCTAATGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAATATGAGTTTCTTCATCAGTATAAATCTCCGTCTAATGATGA  450

seq1  CAAAGTTACTACTATAACATCCCCTTCATGATTCTGGCTGCATCTTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTACTACTATAACATCCCCTTCATGATTCTGGCTGCATCTTGAAT  500

seq1  TTAGAGAGGAAACTGAGGCATCTGTTGTATTCACTTCATCAGCCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGAAACTGAGGCATCTGTTGTATTCACTTCATCAGCCCCTTTC  550

seq1  CAACTTCCCTGAGCAGTGCTTTCTCAGTTGGTGTATCTTTTGCATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCCTGAGCAGTGCTTTCTCAGTTGGTGTATCTTTTGCATGCTGT  600

seq1  GTAATATTTCTTTTTTTCTAATTTAATTTTTTTACTTATTTATTTATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTCTTTTTTTCTAATTTAATTTTTTTACTTATTTATTTATTTA  650

seq1  CATTTCAAATGTTATTCCCTTTCCCGATTTCCCACTCCAGAAACCATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAATGTTATTCCCTTTCCCGATTTCCCACTCCAGAAACCATCTA  700

seq1  TCTTGTCCCCCCTCCTCCTGATTCTATGTATGAGCATGTGCCCTCACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCCCCCTCCTCCTGATTCTATGTATGAGCATGTGCCCTCACCCA  750

seq1  CTCATTCACTCCCATCTCCCTGCCCTCATATTCCCCTACTTTAGGGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCACTCCCATCTCCCTGCCCTCATATTCCCCTACTTTAGGGCATC  800

seq1  AAGCCTTCACAGGACCAAGGGCCTCTTCTCCCATTGATGCCCAACAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCACAGGACCAAGGGCCTCTTCTCCCATTGATGCCCAACAAAGA  850

seq1  ATTCTCAACTGAGGAAATTTGAATGGTTGAGAAGCACCTAAAGAAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAACTGAGGAAATTTGAATGGTTGAGAAGCACCTAAAGAAATGAT  900

seq1  CAACATCATTAGGGCGATGCAAAGCAAAACAATCCTGAGATTCCACCTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATTAGGGCGATGCAAAGCAAAACAATCCTGAGATTCCACCTCA  950

seq1  AATGAGTCAGAGTGGCTAAGATCAAAAACTCAGGTGACAGCAGATACTGT  1000
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  AATGAGTCAGAGTGGCTAAGATC-AAAACTCA-GTGACAGCAGATACTGT  998

seq1  AGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGAATTGCAA  1050
      |||||||||||||||||||| ||||| |||||||| |||| |||||||||
seq2  AGAGGATGTGGAGAAAGAGG-ACACT-CTCCATTG-TGGT-GAATTGCAA  1044

seq1  GCTGGGACAACCACTCTGGAAATAAGTCTGGCAGTTCCTTAGAAAATTGG  1100
      ||| |||| |||||||||| |||||||||||||||    |||||||| | 
seq2  GCT-GGAC-ACCACTCTGGGAATAAGTCTGGCAGT---CTAGAAAATGGT  1089

seq1  AAATAGTATTAC  1112
      ||||||||||||
seq2  AAATAGTATTAC  1101


seq1: chr16_80686764_80687575
seq2: B6Ng01-295D24.g_66_878 (reverse)

seq1  TTTTTCCTCT-CCCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTT  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTCCCCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTT  50

seq1  CTTTTTTTTCAAATAAATTTGTCTGTAAAATGAAGATCAAGTTTGGACTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTCAAATAAATTTGTCTGTAAAATGAAGATCAAGTTTGGACTT  100

seq1  TTGTTTCATGGATCCATGAACAGTTGAGAGTCTGGCCATCTAAAACTACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATGGATCCATGAACAGTTGAGAGTCTGGCCATCTAAAACTACC  150

seq1  CTTATTGCTTTACAACAATGTGATTAGTTCCTTTCTTTTCAAATCCATCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCTTTACAACAATGTGATTAGTTCCTTTCTTTTCAAATCCATCA  200

seq1  CTTATTTTTTGTACTTCACAACTGTCAAAATCTTGGGAAATCAGAAGGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTTGTACTTCACAACTGTCAAAATCTTGGGAAATCAGAAGGTA  250

seq1  TATAGAATATAAATAAATGTGAATACATGAGAAAAATTTACAGATTATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATATAAATAAATGTGAATACATGAGAAAAATTTACAGATTATAT  300

seq1  TTAAAAGTTTACAAGAAAGTAGATGTGATATAAAGCCCATTTTACAATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTACAAGAAAGTAGATGTGATATAAAGCCCATTTTACAATCT  350

seq1  ATTTATTAACTATTTTTAAAACTCAAAGAAATATTGTGCATAACTGGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAACTATTTTTAAAACTCAAAGAAATATTGTGCATAACTGGTGT  400

seq1  TGCTAGAAACTTCAGAAATGAGTTAGACTAGTTCTTAATTTGGGCCTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAACTTCAGAAATGAGTTAGACTAGTTCTTAATTTGGGCCTTTG  450

seq1  CTTTCTCCCATGCGTTGTGGACAAGTTAAAATTGTCCAACCTTCCTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCCATGCGTTGTGGACAAGTTAAAATTGTCCAACCTTCCTTTCT  500

seq1  CACCAAGATGCACATTGGTCTAAGACTCATGTTCCTCCTGTTGCTCACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGATGCACATTGGTCTAAGACTCATGTTCCTCCTGTTGCTCACTG  550

seq1  TGATTTTGACAGAACATTTGGGTGAGAACAGCTGAGAAGAACCATATCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGACAGAACATTTGGGTGAGAACAGCTGAGAAGAACCATATCCC  600

seq1  AGCAAAGTGCTACATGATATTGAAATTTTCTCAATGAAATGCATTATTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGCTACATGATATTGAAATTTTCTCAATGAAATGCATTATTCT  650

seq1  TTTACTTTTTGATTCAGCCATACTCAAATTTTCCAGAAAGAGAAAGTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTGATTCAGCCATACTCAAATTTTCCAGAAAGAGAAAGTATA  700

seq1  GTCAGAACCTCTGCTACAATGTGGCCTGAGCGACAGTTGATTACTGACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACCTCTGCTACAATGTGGCCTGAGCGACAGTTGATTACTGACAC  750

seq1  CTTCTGAGCTTGTAATTCACTTTTCCATCAGCATTTTCATCTTCCAATCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGCTTGTAATTCACTTTTCCATCAGCATTTTCATCTTCCAATCT  800

seq1  CTCTGTAGAATTC  812
      |||||||||||||
seq2  CTCTGTAGAATTC  813


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