BAC Information

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BAC

Clone NameB6Ng01-296D21
Chromosome16 (Build37)
Map Location 62,341,845 - 62,529,801
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296D21.bB6Ng01-296D21.g
ACCGA091900GA091901
length1,0191,085
definitionB6Ng01-296D21.b B6Ng01-296D21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,341,845 - 62,342,526)(62,528,711 - 62,529,801)
sequence
gaattcctgataccaattctagatatccactaggtctcacacaaacacac
aatcatgttcctacctatgtgcgtatatacacatgcaataatgagtacta
cacacacacacacacacacacacacacacactcacacacacacacaaaac
accaaaaccacttattttaaaagaccaatgaggcacccaggacctaaggc
tattccacagcccattgtgcatgagtctcaccagaagagagccattctcc
aaggagtgctctcacttccaggctcagaggtaagatagctactttctctc
aaataattgtccaaagctagacctttgaggaacacacaaggtacaggaac
agtgcaacagttggaacaggatgcttctggttgccatttgcaccctgggg
ctaggactattccacaggccacagtacataggttccaccaggagagggct
attctcccaggagtgctgaaacaggcttataggctcacaggagggacaag
tttcagccagatacagcaagaacatctaacaccagagataaccacatggt
gaaaagcaaacacaagaatcttaccagcagaaaccaagattacttggcat
catcagaacacagttctcccagcacatcaagtcctggataccccaaccca
caggaaaagcaagatttggatttaaaatcacatctcatggtgctgataga
ggatttgaaaaaggacataaataactaccttaaagaaatacaagagaaca
caggtaaacagctaaaagcccttaaagagaaaacaaacaaacaaacaaac
aaaatcccttaaacaattacaggtaagcataatcaaacaggtgaaggaat
taagcaaaaccatccaggatataaaaatggagtagaaacaataaagaaat
cacaaagggagacaaccctagagatagaaaacctaggaaagaaataagag
taatagatgcaagcatcacaaacagaatacagagatagaaaaaaagaatc
tcaggtttagagttaccat

gaattctcattaagacaggaaataaacaaccgaaaatagcttcagaaagt
ccctgaaactgagtacatttactaggccccttcctcccccaaaatgtata
agggctacacactgctgagagatagtctctaagctgagctacttagcaaa
ggtccagacagagcaacatggaacaaacaaagacaagctgaattgcttgg
aagcagctcagatcaactgaaacatttaggagacaccttccaactctaga
ggtgcctgaaagttgtgcagtatcctccaggcttccagtttttgtgaact
gtcactcatgattgtagaggctttggtggtacagctagctgtctttgagt
catctatgcttcagtaagtaacctctcacttgtattcttacaagttactc
attggttcaccaacttagactttggaaatacccatacttaggtctgttat
cagttccctaggtgaacaggcattttttatgtccccccgggaatagtatc
acacaggaccgtggttctattcattaaaccagtaaaccagtatagtccct
gggaagtagtgtctgtctcgacatcagctcagtcatatagttctcgtcta
gaatactggggtgaaaggactgctaagttcagttcccgggagaaagggtg
agaggagattggacctccactttctcttttttttttgtttcagctttgag
taaattctattgtgcaccatttggcagagagtatcctaaggagaaacatt
acagttttaaccacttaacactataaaaggacaactttaaacattgttgc
atagcatattcattaataccagttagatcctgcatcacagtaagtacatc
aaagcagtttatagaccctagctatctagtatactaagtaactggcaatg
atatttggctagtaatgtttaaaacaacaacaaacaaatgtaaaagggaa
accaagaagtgtgttactttccatggctgggtagaaacagtcagagatca
atggaggaaagctttatttggcctgtatggatcatagttagaatatataa
tcataatatttggatccactgatttcagttgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62341845_62342526
seq2: B6Ng01-296D21.b_48_729

seq1  GAATTCCTGATACCAATTCTAGATATCCACTAGGTCTCACACAAACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATACCAATTCTAGATATCCACTAGGTCTCACACAAACACAC  50

seq1  AATCATGTTCCTACCTATGTGCGTATATACACATGCAATAATGAGTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTTCCTACCTATGTGCGTATATACACATGCAATAATGAGTACTA  100

seq1  CACACACACACACACACACACACACACACACTCACACACACACACAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACTCACACACACACACAAAAC  150

seq1  ACCAAAACCACTTATTTTAAAAGACCAATGAGGCACCCAGGACCTAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAACCACTTATTTTAAAAGACCAATGAGGCACCCAGGACCTAAGGC  200

seq1  TATTCCACAGCCCATTGTGCATGAGTCTCACCAGAAGAGAGCCATTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACAGCCCATTGTGCATGAGTCTCACCAGAAGAGAGCCATTCTCC  250

seq1  AAGGAGTGCTCTCACTTCCAGGCTCAGAGGTAAGATAGCTACTTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGCTCTCACTTCCAGGCTCAGAGGTAAGATAGCTACTTTCTCTC  300

seq1  AAATAATTGTCCAAAGCTAGACCTTTGAGGAACACACAAGGTACAGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTGTCCAAAGCTAGACCTTTGAGGAACACACAAGGTACAGGAAC  350

seq1  AGTGCAACAGTTGGAACAGGATGCTTCTGGTTGCCATTTGCACCCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACAGTTGGAACAGGATGCTTCTGGTTGCCATTTGCACCCTGGGG  400

seq1  CTAGGACTATTCCACAGGCCACAGTACATAGGTTCCACCAGGAGAGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACTATTCCACAGGCCACAGTACATAGGTTCCACCAGGAGAGGGCT  450

seq1  ATTCTCCCAGGAGTGCTGAAACAGGCTTATAGGCTCACAGGAGGGACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCAGGAGTGCTGAAACAGGCTTATAGGCTCACAGGAGGGACAAG  500

seq1  TTTCAGCCAGATACAGCAAGAACATCTAACACCAGAGATAACCACATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCCAGATACAGCAAGAACATCTAACACCAGAGATAACCACATGGT  550

seq1  GAAAAGCAAACACAAGAATCTTACCAGCAGAAACCAAGATTACTTGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAACACAAGAATCTTACCAGCAGAAACCAAGATTACTTGGCAT  600

seq1  CATCAGAACACAGTTCTCCCAGCACATCAAGTCCTGGATACCCCAACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAACACAGTTCTCCCAGCACATCAAGTCCTGGATACCCCAACCCA  650

seq1  CAGGAAAAGCAAGATTTGGATTTAAAATCACA  682
      ||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGCAAGATTTGGATTTAAAATCACA  682


seq1: chr16_62528711_62529801
seq2: B6Ng01-296D21.g_79_1154 (reverse)

seq1  GATACAAACTGAAAATCAGTGGATCCAAATTATTATGATTATAATATCTA  50
      ||||| ||||| ||||||||||||||||| |||||||||||||   ||||
seq2  GATAC-AACTG-AAATCAGTGGATCCAAA-TATTATGATTATATATTCTA  47

seq1  AACCTATGATCCAATACAGGCCAAATAAAGCTTTCCTCCATTGATCTCTT  100
      |  ||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  A--CTATGATCC-ATACAGGCCAAATAAAGCTTTCCTCCATTGATCTC-T  93

seq1  GACTG-TTCTACCCAGCCATGGAAAAGTAACACACTTCTTTGGTTTCCCT  149
      ||||| |||||||||||||||| ||||||||||||||| |||||||||| 
seq2  GACTGTTTCTACCCAGCCATGG-AAAGTAACACACTTC-TTGGTTTCCC-  140

seq1  TTTTACATTTTGTTTGTTTGTTTGTTTTTAAACATTACTAGCCAAATATC  199
      ||||||| |||||||| |||||   |||||||||||||||||||||||||
seq2  TTTTACA-TTTGTTTG-TTGTT--GTTTTAAACATTACTAGCCAAATATC  186

seq1  ATTTGCCAGTTACTTAGTATACTAGATAGCTAGGGTCTATAAACCTGCTT  249
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  A-TTGCCAGTTACTTAGTATACTAGATAGCTAGGGTCTATAAA-CTGCTT  234

seq1  TGATGTACTTACTGTGATGCAGGATCTAACTGGTATTAATGAATATGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACTTACTGTGATGCAGGATCTAACTGGTATTAATGAATATGCTA  284

seq1  TGCAACAATGTTTAAAGTTGTCCTTTTATAGTGTTAAGTGGTTAAAACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAATGTTTAAAGTTGTCCTTTTATAGTGTTAAGTGGTTAAAACTG  334

seq1  TAATGTTTCTCCTTAGGATACTCTCTGCCAAATGGTGCACAATAGAATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTCTCCTTAGGATACTCTCTGCCAAATGGTGCACAATAGAATTT  384

seq1  ACTCAAAGCTGAAACAAAAAAAAAAGAGAAAGTGGAGGTCCAATCTCCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGCTGAAACAAAAAAAAAAGAGAAAGTGGAGGTCCAATCTCCTC  434

seq1  TCACCCTTTCTCCCGGGAACTGAACTTAGCAGTCCTTTCACCCCAGTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTTCTCCCGGGAACTGAACTTAGCAGTCCTTTCACCCCAGTATT  484

seq1  CTAGACGAGAACTATATGACTGAGCTGATGTCGAGACAGACACTACTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACGAGAACTATATGACTGAGCTGATGTCGAGACAGACACTACTTCC  534

seq1  CAGGGACTATACTGGTTTACTGGTTTAATGAATAGAACCACGGTCCTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACTATACTGGTTTACTGGTTTAATGAATAGAACCACGGTCCTGTG  584

seq1  TGATACTATTCCCGGGGGGACATAAAAAATGCCTGTTCACCTAGGGAACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTATTCCCGGGGGGACATAAAAAATGCCTGTTCACCTAGGGAACT  634

seq1  GATAACAGACCTAAGTATGGGTATTTCCAAAGTCTAAGTTGGTGAACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGACCTAAGTATGGGTATTTCCAAAGTCTAAGTTGGTGAACCAA  684

seq1  TGAGTAACTTGTAAGAATACAAGTGAGAGGTTACTTACTGAAGCATAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACTTGTAAGAATACAAGTGAGAGGTTACTTACTGAAGCATAGAT  734

seq1  GACTCAAAGACAGCTAGCTGTACCACCAAAGCCTCTACAATCATGAGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAGACAGCTAGCTGTACCACCAAAGCCTCTACAATCATGAGTGA  784

seq1  CAGTTCACAAAAACTGGAAGCCTGGAGGATACTGCACAACTTTCAGGCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACAAAAACTGGAAGCCTGGAGGATACTGCACAACTTTCAGGCAC  834

seq1  CTCTAGAGTTGGAAGGTGTCTCCTAAATGTTTCAGTTGATCTGAGCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTTGGAAGGTGTCTCCTAAATGTTTCAGTTGATCTGAGCTGCT  884

seq1  TCCAAGCAATTCAGCTTGTCTTTGTTTGTTCCATGTTGCTCTGTCTGGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAATTCAGCTTGTCTTTGTTTGTTCCATGTTGCTCTGTCTGGAC  934

seq1  CTTTGCTAAGTAGCTCAGCTTAGAGACTATCTCTCAGCAGTGTGTAGCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTAAGTAGCTCAGCTTAGAGACTATCTCTCAGCAGTGTGTAGCCC  984

seq1  TTATACATTTTGGGGGAGGAAGGGGCCTAGTAAATGTACTCAGTTTCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATTTTGGGGGAGGAAGGGGCCTAGTAAATGTACTCAGTTTCAGG  1034

seq1  GACTTTCTGAAGCTATTTTCGGTTGTTTATTTCCTGTCTTAA  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGAAGCTATTTTCGGTTGTTTATTTCCTGTCTTAA  1076


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