BAC Information

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BAC

Clone NameB6Ng01-297F10
Chromosome16 (Build37)9 (Build37)
Map Location 62,112,971 - 62,113,630122,611,184 - 122,611,910
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297F10.bB6Ng01-297F10.g
ACCGA092718GA092719
length1,048785
definitionB6Ng01-297F10.b B6Ng01-297F10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,112,971 - 62,113,630)(122,611,184 - 122,611,910)
sequence
gaattctactttacttttgggtcgtgtcctattatatggcaatgtacccg
gttcgttctgaggttgttccaggaggcccttatctcaaatttgttcttgg
aacattttttgtttgggagggttctaactctatggtgaggagttcaggaa
tgcattctggggtgaagagttcaggagtgttctgggaacagtctctacat
gggaggggtcgggctctggggtgaggaagagttcgtgaattttttatctt
tattcttcatatgatttgtaaccgttttcaaattacctatgaagtagtag
tggaaataattttgtggttgggggtttaacatattggggaactgtcggaa
ataataaattatctataaccactatttggtgagttttcaatagtcaaaaa
tatacatacacattttaatagaattttgattaattttgtactttgcaaac
tttctttttttcttttttgtttatatttaatcgaaaagctcatcaagtcc
cattatataatccattttcttttctttagtgttttgaaggctaatattag
aactaaattaatgtaataaattaattttcaaaattagctagttttatgta
tgatgcagccttaatgactttaacaaatttcctcttcctttttgtcttgt
gatgatatttatgtcccataacatttataattttatttataatattataa
aaataattgctgtagataccagccctctaattttccttctctatgcagag
atactagaattttttggctcctaatgttttcctttttctccattattatt
tataatgagcaaattcccacagacgacttggtcctggtcttgaccctgtt
ttgagatgtgagaggaatgttatttatagggagaaccttgactacacagc
aattcgtaccacagtggatcattttgcaaatggcagtaacttatatatta
tttgcaccacattgctttgtaacacatccttggtactgactacatacaca
gctgacactgtactacagctgaaagctgcttgtattacacacggtgga
gaattctgttggctatccttatcagggaacacacagctggtgttttcaaa
ggacttaggcaagtgccgagggtggatcataaatacattgcaaggatatg
aaaggtagtttccttgtatgcctctctggaaaatccaagtgctgttgaaa
tctgcgaagtcaccctcattctctcacatccccagaaataggctcatgct
ggtttctgtctctcctactccccaccttccttcaagcgcctcacatcgaa
ctccgacaggaaaagtctcatctgaaaatgtagttccatgtggcagaaga
ggagggaccaccggaggagtgagaataacgggactctgccaagatggtca
ctattatgccctttagtgccagcagatgtcactatgtgaggtcaggtgta
ccagagagacggtgaagtggacaaagcaagcttcttgcctgtgaggccag
gggtcatctgctgacactgggcaggcaacgtaatctctctgagagtctct
ttcagtgtgtgtctgtgtgtctacatctcttgtttgtctactatttgaga
cagggtcagcctggcatggtgactcttgcctttaatcttagcactgggga
ggcagaggcagactgctcttcatgtttgatgccagcctaatctacagagc
aagtcccaggacagccaatgaaactctgtcttgaaaaaccaagagagaga
tggtgtgtgtgtgtgtgtgtgtgtgtggagtccacttttcagtagataga
cttggccccctagttgacagatgggaccatcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62112971_62113630
seq2: B6Ng01-297F10.b_422_1081 (reverse)

seq1  TGTAATAC-AGCAGTTTTTAGCTGTAGTACAGTGACAGCTGGTGTACTGT  49
      |||||||| ||||| ||| ||||||||||||||| ||||| ||||| |||
seq2  TGTAATACAAGCAGCTTTCAGCTGTAGTACAGTGTCAGCT-GTGTA-TGT  48

seq1  AATCAGTCACAAGGATGTGTTAC-AAGCAATTTGTTACAAATAATATATA  98
      | |||||  |||||||||||||| ||||||| || | |||||||||||||
seq2  AGTCAGTACCAAGGATGTGTTACAAAGCAATGTGGTGCAAATAATATATA  98

seq1  AGTTACTGCCATTTG-GAAATGATCCACTTTTTTATGAATTGCTGTGTAG  147
      |||||||||||||||  |||||||||||| |  || ||||||||||||||
seq2  AGTTACTGCCATTTGCAAAATGATCCACTGTGGTACGAATTGCTGTGTAG  148

seq1  TCAAGGTTCTCCCTATAAATAACATTCCTCTCACATCTCAAAACAGGGTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTCTCCCTATAAATAACATTCCTCTCACATCTCAAAACAGGGTC  198

seq1  AAGACCAGGACCAAGTCGTCTGTGGGAATTTGCTCATTATAAATAATAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGACCAAGTCGTCTGTGGGAATTTGCTCATTATAAATAATAAT  248

seq1  GGAGAAAAAGGAAAACATTAGGAGCCAAAAAATTCTAGTATCTCTGCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAGGAAAACATTAGGAGCCAAAAAATTCTAGTATCTCTGCATA  298

seq1  GAGAAGGAAAATTAGAGGGCTGGTATCTACAGCAATTATTTTTATAATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAAATTAGAGGGCTGGTATCTACAGCAATTATTTTTATAATAT  348

seq1  TATAAATAAAATTATAAATGTTATGGGACATAAATATCCTCACAAGACAA  397
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATAAATAAAATTATAAATGTTATGGGACATAAATATCATCACAAGACAA  398

seq1  AAAGGAAGAGGAAATTTCTTAAAGTCATTAAGGCTGCATCATACATAAAA  447
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGGAAGAGGAAATTTGTTAAAGTCATTAAGGCTGCATCATACATAAAA  448

seq1  CTAGCTAATTTTGAAAATTAATTTATTACATTAATTTAGTTCTAATATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAATTTTGAAAATTAATTTATTACATTAATTTAGTTCTAATATTA  498

seq1  GCCTTCAAAACACTAAAGAAAAGAAAATGGATTATATAATGGGACCTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCTTCAAAACACTAAAGAAAAGAAAATGGATTATATAATGGGACTTGAT  548

seq1  GAGCTTTTAGATTAAATATAAACAAAAAAGAAAAAAAGAAAGTTTGCAAA  597
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTCGATTAAATATAAACAAAAAAGAAAAAAAGAAAGTTTGCAAA  598

seq1  GTACAAAATTAATCAAAATTCTATTAAAATGTGTATGTATATTTTT-ACT  646
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  GTACAAAATTAATCAAAATTCTATTAAAATGTGTATGTATATTTTTGAC-  647

seq1  ATATTGAAAACTCA  660
       |||||||||||||
seq2  -TATTGAAAACTCA  660

seq1: chr9_122611184_122611910
seq2: B6Ng01-297F10.g_66_792

seq1  GAATTCTGTTGGCTATCCTTATCAGGGAACACACAGCTGGTGTTTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGGCTATCCTTATCAGGGAACACACAGCTGGTGTTTTCAAA  50

seq1  GGACTTATGCAAGTGCAGAGGGTGGAGCATAAAGACATTGCAAGGATATG  100
      ||||||| |||||||| ||||||||| |||||| ||||||||||||||||
seq2  GGACTTAGGCAAGTGCCGAGGGTGGATCATAAATACATTGCAAGGATATG  100

seq1  AAAGGTAGTTTCCTTGTATGCCTCTCTGGAAAATCCAAGTGCTGTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGTTTCCTTGTATGCCTCTCTGGAAAATCCAAGTGCTGTTGAAA  150

seq1  TCTGCAAAGTCACCCTCAGTCAATCACATCCCCAGAAATAGGCTCATGCT  200
      ||||| |||||||||||| ||  |||||||||||||||||||||||||||
seq2  TCTGCGAAGTCACCCTCATTCTCTCACATCCCCAGAAATAGGCTCATGCT  200

seq1  GGTTTCTGTCTCTCCTACTCCCCACCTTCCTTCAAGCGCCTCACATCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTCTCTCCTACTCCCCACCTTCCTTCAAGCGCCTCACATCGAA  250

seq1  GTCCGACAGGAAAAGTCTCATCTGAAAATGTAGTTCCATGTGGCAGAAGA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGACAGGAAAAGTCTCATCTGAAAATGTAGTTCCATGTGGCAGAAGA  300

seq1  GGAGGGACCACAGGAGGAGTGAGAATAACAAGACTCTGCCAAGATGGTCA  350
      ||||||||||| |||||||||||||||||  |||||||||||||||||||
seq2  GGAGGGACCACCGGAGGAGTGAGAATAACGGGACTCTGCCAAGATGGTCA  350

seq1  CTAGTATGCCCTTTAGTGCCAGCAGATGTCACTATGTGAGGTCAGGTGTA  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGCCCTTTAGTGCCAGCAGATGTCACTATGTGAGGTCAGGTGTA  400

seq1  CCAGAGAGACGGTGAAGTGGACAAAGCAAGCTTCTTGCCAGTGAGGCCAG  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGAGAGACGGTGAAGTGGACAAAGCAAGCTTCTTGCCTGTGAGGCCAG  450

seq1  GGGTCAGCTGCTGACACTGGGCAGGCAACGTAATCTCTCTGAGAGTCTCT  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATCTGCTGACACTGGGCAGGCAACGTAATCTCTCTGAGAGTCTCT  500

seq1  TTCAGTGTGTGTCTGTGTGTCTACATCTCTTGTTTGTCTACTATTTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGTGTCTGTGTGTCTACATCTCTTGTTTGTCTACTATTTGAGA  550

seq1  CAGGGTCAGCCTGGCATGGTGACTCTTGCCTTTAATCTTAGCACTGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCAGCCTGGCATGGTGACTCTTGCCTTTAATCTTAGCACTGGGGA  600

seq1  GGCAGAGGCAGACTGCTCTTCATGTTTGATGCCAGCCTAATCTACAGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGACTGCTCTTCATGTTTGATGCCAGCCTAATCTACAGAGC  650

seq1  AAGTCCCAGGACAGCCAATGAAACTCTGTCTTGAAAAACCAAGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGGACAGCCAATGAAACTCTGTCTTGAAAAACCAAGAGAGAGA  700

seq1  TGGTGTGTGTGTGTGTGTGTGTGTGTG  727
      |||||||||||||||||||||||||||
seq2  TGGTGTGTGTGTGTGTGTGTGTGTGTG  727