BAC Information

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BAC

Clone NameB6Ng01-299H17
Chromosome16 (Build37)
Map Location 80,603,022 - 80,604,163
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299H17.bB6Ng01-299H17.g
ACCGA094310GA094311
length9551,123
definitionB6Ng01-299H17.b B6Ng01-299H17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaggaggagaattttaatgaacaaataaaaggctcatcaaacaa
gataaagattctaaagaagacataaggacacacttcaatgaattataaaa
gcaaaggaataaattcctgagtggaaaacacaaaggtactaaatgaaatg
acagatatttcataatctgaaaattaaaaattaaattcattatagaaata
taaattcaaaagaaaacccaaggagtgacactctggggagtaccagagtc
caaagagaggttagagactctcaggacccagtgggagtgaccttagatga
aatgcccaacactcaggagagggaattcagagaccacctccagtagataa
acatggtctcaagagaagggatggttttatcaacctacagtaaaaatttc
tgacccagaattgttcctgtctgaaagaactgcaggcagaataatggagg
agaggctgagagaaatgcaggccaatgacagcccaacttggaatccatct
caataggtgacaccaaggcctgacactatttctgattctgtgatgtgctt
atagacaggtgccggacatggctgtgctctgagaggctctcccagaagct
gactgagactgccacagatacttacatccaaccaatggactacagtcagg
gacccactgtggttgaattagggtaaggttggaataagcagaagaggagg
gtgactcaataggaagaccagcagtctcaaccaggacctctgggatcttc
cagagattgagccacaaaccaggcagcatacagtagctggtccaaggccc
agagacatatatagcagaggactgcctggtctggccagtagagaagatga
gcctagttctccagagactttggccctagggagggggaaagggggaatgc
ctggggggccaggaagcatcctcttagagacaggaggggggtaggggggg
aagca

gaattctatttataaagttatatataatatgaatattagaaaacatgtgt
taaagcatattaacctgtacaggaaaaaagatatttctaaacgtccaatt
ttgacaggtatacattatctacagacaaatgtcagacatgtggtatttca
tgctgataattattttaaaagaccaaggacttgaacattttttgtaagaa
aaatttgtcacactaagcttaaattttatagatgatgaacagatatagaa
tagagttggacagaatgtttaaaattgttacaggtaaaagagacaaaata
gatgatatttctacttttgtttgctgttgctgttataaaatatgcagatg
aaagcaagttagaaagcaagttaggtttgttttatttcaccatccctgtc
taatgtccagaactgtggggaaaattgaggcaatcagaactcaggagata
acagcatccacaggcaggagagtgcacaaagtctttgctctattcacttt
ctccacattcatatatctgggccacacacccagacaatagtgccaccaag
ttttaaaggttgtctacttaaatcaattaacataatttcattaaagacaa
tcctctaaagtcccgcccacaggccaaaacaatcattccacttcctcact
gacattctcccatgtgattcaattctagattgtgtcaatttgaaaattaa
aattaaactcatctgttgtctaaaggaaggctgtgccagactatgaagga
tgaaaagttgctgctgggagaagttgaatcaagattcacacaactacatt
gtgtgggtagtgttcagacacttagacttgtatatgtggggctttacaaa
atggcttcataaggaattcaagaaaaatgtacaggcaaatacacaatatg
gacactgaaaaataaaaactactaaaaaatgtgtttacaattagaagtca
ggtgtctacacccactagatttcagagttctctttgtcactccgtcatgt
gactatgtttgtcaatagtatagcagataaatctcaaaagggaaagagaa
agcattgcccataagtctatttctatggaagattatttatgtcaagacga
taggatgttccacgctgaccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80603022_80604163
seq2: B6Ng01-299H17.g_67_1189

seq1  GAATTCTATTTATAAAGTTATATATAATATGAATATTAGAAAACATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTATAAAGTTATATATAATATGAATATTAGAAAACATGTGT  50

seq1  TAAAGCATATTAACCTGTACAGGAAAAAAGATATTTCTAAACGTCCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATATTAACCTGTACAGGAAAAAAGATATTTCTAAACGTCCAATT  100

seq1  TTGACAGGTATACATTATCTACAGACAAATGTCAGACATGTGGTATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGTATACATTATCTACAGACAAATGTCAGACATGTGGTATTTCA  150

seq1  TGCTGATAATTATTTTAAAAGACCAAGGACTTGAACATTTTTTGTAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATAATTATTTTAAAAGACCAAGGACTTGAACATTTTTTGTAAGAA  200

seq1  AAATTTGTCACACTAAGCTTAAATTTTATAGATGATGAACAGATATAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTCACACTAAGCTTAAATTTTATAGATGATGAACAGATATAGAA  250

seq1  TAGAGTTGGACAGAATGTTTAAAATTGTTACAGGTAAAAGAGACAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTGGACAGAATGTTTAAAATTGTTACAGGTAAAAGAGACAAAATA  300

seq1  GATGATATTTCTACTTTTGTTTGCTGTTGCTGTTATAAAATATGCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATTTCTACTTTTGTTTGCTGTTGCTGTTATAAAATATGCAGATG  350

seq1  AAAGCAAGTTAGAAAGCAAGTTAGGTTTGTTTTATTTCACCATCCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGTTAGAAAGCAAGTTAGGTTTGTTTTATTTCACCATCCCTGTC  400

seq1  TAATGTCCAGAACTGTGGGGAAAATTGAGGCAATCAGAACTCAGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCAGAACTGTGGGGAAAATTGAGGCAATCAGAACTCAGGAGATA  450

seq1  ACAGCATCCACAGGCAGGAGAGTGCACAAAGTCTTTGCTCTATTCACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCCACAGGCAGGAGAGTGCACAAAGTCTTTGCTCTATTCACTTT  500

seq1  CTCCACATTCATATATCTGGGCCACACACCCAGACAATAGTGCCACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATTCATATATCTGGGCCACACACCCAGACAATAGTGCCACCAAG  550

seq1  TTTTAAAGGTTGTCTACTTAAATCAATTAACATAATTTCATTAAAGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGTTGTCTACTTAAATCAATTAACATAATTTCATTAAAGACAA  600

seq1  TCCTCTAAAGTCCCGCCCACAGGCCAAAACAATCATTCCACTTCCTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAAAGTCCCGCCCACAGGCCAAAACAATCATTCCACTTCCTCACT  650

seq1  GACATTCTCCCATGTGATTCAATTCTAGATTGTGTCAATTTGAAAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTCCCATGTGATTCAATTCTAGATTGTGTCAATTTGAAAATTAA  700

seq1  AATTAAACTCATCTGTTGTCTAAAGGAAGGCTGTGCCAGACTATGAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACTCATCTGTTGTCTAAAGGAAGGCTGTGCCAGACTATGAAGGA  750

seq1  TGAAAAGTTGCTGCTGGGAGAAGTTGAATCAAGATTCACACAACTACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTGCTGCTGGGAGAAGTTGAATCAAGATTCACACAACTACATT  800

seq1  GTGTGGGTAGTGTTCAGACACTTAGACTTGTATATGTGGGGCTTTACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTAGTGTTCAGACACTTAGACTTGTATATGTGGGGCTTTACAAA  850

seq1  ATGGCTTCATAAGGAATTCAAGAAAAATGTACAGGCAAAATACACAATAT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGGCTTCATAAGGAATTCAAGAAAAATGTACAGGC-AAATACACAATAT  899

seq1  GGACACTGAAAAATAAAAACTACTAAAAAATGTGTTTACAAATTAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGACACTGAAAAATAAAAACTACTAAAAAATGTGTTTAC-AATTAGAAGT  948

seq1  CAGGTGTCTACACCCACTAGATTTCAGAGTTCTCTTTGTCAACTCCGTCA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGTGTCTACACCCACTAGATTTCAGAGTTCTCTTTGTC-ACTCCGTCA  997

seq1  ATTGTGACTATGTTTGTCAATTAAGTATAGGCAAGATAAAATCTTCAAAA  1050
        |||||||||||||||||||  |||||||   |||| ||||| ||||||
seq2  --TGTGACTATGTTTGTCAAT--AGTATAG--CAGAT-AAATC-TCAAAA  1039

seq1  GGGAAAGAGAAAAGCATTTGCCCCATAAGGTCTA-TTCTATGAAAGAATA  1099
      ||||||||| ||||||||   ||||||| ||||| ||||||| |||| ||
seq2  GGGAAAGAG-AAAGCATT--GCCCATAA-GTCTATTTCTATGGAAGATTA  1085

seq1  TATTATGTCAGGAAGAAAAAGGATGGTTCAAGGGCTGACCTTT  1142
      | |||||||| || |  | |||||| | ||   ||||||||||
seq2  T-TTATGTCAAGACG--ATAGGATGTTCCA--CGCTGACCTTT  1123


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