BAC Information

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BAC

Clone NameB6Ng01-300M18
Chromosome16 (Build37)
Map Location 37,171,644 - 37,172,388
singlet/doubletsinglet
Overlap geneStxbp5l
Upstream geneEG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300M18.bB6Ng01-300M18.g
ACCGA095280GA095281
length1,224743
definitionB6Ng01-300M18.b B6Ng01-300M18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttaatccacttagatttgaccttagtacaaggagataggaatg
gatcaattcgcattcttctacatgataaccaccactttgccagcaacatt
tgttgaaaatgctgtcttttttccactggatggttttagctcccttgtca
aagatcaagtgaccataggtgtgtgggttcatttctgggtctttgattct
attccattggtctacttgtctgtcactataccagtactatgcagggtttt
tgttttgttttgttttgttttgttttgttttgttttttatcaaaattgct
ctgtagtacagctttaggtttggcatgatgataccaccagaggttctttt
atcattgagaagagtttttgctatcctaggttttttgttattccagatga
atttacagatagccctttataatttgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactatattgatcttgccaatccatgagcatgggagatctttccatcttc
tgagaccttctttaatttctttcttcagagacttgaagttcttatcatac
agatctttcacttccttagttagagtcaaggtattttatattatttgtga
ctattgtgaagggcattgtttccctaatttctttctcagcctgtttatcc
tttgtgtagagaaagacaattgacttgtttgagttaattttatatccagc
tgtttatcaggtttaggagttctctggtggaatttttagggtcacttata
tatactatcatatcatctgcaaatagtgatattttgacctctttctttcc
aatttgtatccccttgatctccttttgttgtctaattgctctggctagga
cttcaaatactatgttgaatatatatgtagaaagtgggcagctttgtcta
gtccctgatttagtgggattgcttccagcttctctccatttactttgatg
tggctactagtttgctgtagattgcttttatcatgtttaggtatggcctt
gaattcctgatctttccaggacttttatcatgaatgggtgtggatttgta
aatgttttcctacaagatgatcatatgggttttgtcttgagttgttttat
aggaggggattcatgaagattccgatatataaccatctacatcctggtaa
ggataccatacgtggtctcagcga
gaattcttgaatgcatgtacaaatgaatctctgcatctatagtctgtttc
tcatgcctttcttgagatttttccttgtttatttattttgtcctaattat
ttgttttgttttaaactatattatattctattatattcccttagaaacct
gtttgctttctaacaaaagaaattgggtagatccagatgagaagggaggt
tgggagaaacttggacgggtagaggaagtggaaactgtaatcaggatatg
gtgtatgggaaaaatctatttccaataaaaagaaaaacagtggtatattg
aacaaaaatgattttaataaaattaccatgtataaaatctgtgttgcatt
taaggtagagttcaaagggtaatttagcactgaataattatagaaacatg
taataaataatgaacataaaaattaaacatatatcataaaaggttgaaaa
aggaaaaataaagtcaaaggaaagaagaagtaattgataaagctaatgta
taaatttaagttaaaaataaacaagactaaaacattggttaaggccaagt
aaaacttttccatgatggggataaatttatttaaaaagaaagcataatta
tgcaaaataaagaacacaggaagtaatgtttcaatagataaatggtactt
aaactttaaagagtaagtaattccaaaaattacttaaacctttatgcaga
agaggaaggagagaaaggaggaggaggacgaggggggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37171644_37172388
seq2: B6Ng01-300M18.g_69_811

seq1  GAATTCTTGAATGCATGTACAAATGAATCTCTGCATCTATAGTCTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAATGCATGTACAAATGAATCTCTGCATCTATAGTCTGTTTC  50

seq1  TCATGCCTTTCTTGAGATTTTTCCTTGTTTATTTATTTTGTCCTAATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTTTCTTGAGATTTTTCCTTGTTTATTTATTTTGTCCTAATTAT  100

seq1  TTGTTTTGTTTTAAACTATATTATATTCTATTATATTCCCTTAGAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTAAACTATATTATATTCTATTATATTCCCTTAGAAACCT  150

seq1  GTTTGCTTTCTAACAAAAGAAATTGGGTAGATCCAGATGAGAAGGGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTCTAACAAAAGAAATTGGGTAGATCCAGATGAGAAGGGAGGT  200

seq1  TGGGAGAAACTTGGACGGGTAGAGGAAGTGGAAACTGTAATCAGGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAACTTGGACGGGTAGAGGAAGTGGAAACTGTAATCAGGATATG  250

seq1  GTGTATGGGAAAAATCTATTTCCAATAAAAAGAAAAACAGTGGTATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGGGAAAAATCTATTTCCAATAAAAAGAAAAACAGTGGTATATTG  300

seq1  AACAAAAATGATTTTAATAAAATTACCATGTATAAAATCTGTGTTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATGATTTTAATAAAATTACCATGTATAAAATCTGTGTTGCATT  350

seq1  TAAGGTAGAGTTCAAAGGGTAATTTAGCACTGAATAATTATAGAAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGAGTTCAAAGGGTAATTTAGCACTGAATAATTATAGAAACATG  400

seq1  TAATAAATAATGAACATAAAAATTAAACATATATCATAAAAGGTTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATAATGAACATAAAAATTAAACATATATCATAAAAGGTTGAAAA  450

seq1  AGGAAAAATAAAGTCAAAGGAAAGAAGAAGTAATTGATAAAGCTAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAATAAAGTCAAAGGAAAGAAGAAGTAATTGATAAAGCTAATGTA  500

seq1  TAAATTTAAGTTAAAAATAAACAAGACTAAAACATTGGTTAAGGCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAGTTAAAAATAAACAAGACTAAAACATTGGTTAAGGCCAAGT  550

seq1  AAAACTTTTCCATGATGGGGATAAATTTATTTAAAAAGAAAGCATAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTCCATGATGGGGATAAATTTATTTAAAAAGAAAGCATAATTA  600

seq1  TGCAAAATAAAGAACACAGGAAGTAATGTTTCAATAGATAAATGGTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATAAAGAACACAGGAAGTAATGTTTCAATAGATAAATGGTACTT  650

seq1  AAACTTTAAAGAGTAAGTAATTCCAAAAATTACTTAAACCTTTATGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAAAGAGTAAGTAATTCCAAAAATTACTTAAACCTTTATGCAGA  700

seq1  AGAGGAAGGAGAGAAAGGAGGAGGAGGACGAGGGGGAGGAGGAGG  745
      |||||||||||||||||||||||||||||||||||  ||||||||
seq2  AGAGGAAGGAGAGAAAGGAGGAGGAGGACGAGGGG--GGAGGAGG  743